Wall clock time and date at job start Mon Mar 30 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46898 * 109.47515 * 300.28298 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38382 * 119.92621 * 79.72740 * 12 9 7 14 14 C 1.38326 * 120.29029 * 179.76569 * 13 12 9 15 15 C 1.37987 * 120.14771 * 0.50924 * 14 13 12 16 16 C 1.39544 * 119.84879 * 359.74917 * 15 14 13 17 17 C 1.47830 * 120.14408 * 179.97438 * 16 15 14 18 18 C 1.34799 * 125.26978 * 0.02562 * 17 16 15 19 19 C 1.37958 * 114.70558 * 179.97438 * 18 17 16 20 20 C 1.33621 * 115.06544 * 359.97438 * 19 18 17 21 21 S 1.75856 * 109.75900 * 359.77737 * 20 19 18 22 22 C 1.37936 * 119.92657 * 260.00352 * 12 9 7 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99361 * 299.99455 * 11 9 7 25 25 H 1.00897 * 111.00235 * 63.94995 * 11 9 7 26 26 H 1.08002 * 119.85211 * 0.02562 * 13 12 9 27 27 H 1.08001 * 119.92950 * 180.25402 * 14 13 12 28 28 H 1.07994 * 120.07649 * 179.76423 * 15 14 13 29 29 H 1.08002 * 122.64398 * 359.97438 * 18 17 16 30 30 H 1.08001 * 122.46949 * 180.02562 * 19 18 17 31 31 H 1.08002 * 125.11807 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.07778 * 359.95636 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 7 0.4066 -2.5716 1.2051 12 6 2.2305 -3.6445 0.0104 13 6 2.8418 -4.0249 1.1921 14 6 3.7383 -5.0783 1.2062 15 6 4.0366 -5.7502 0.0385 16 6 3.4276 -5.3681 -1.1576 17 6 3.7429 -6.0830 -2.4126 18 6 4.6001 -7.1172 -2.5250 19 6 4.7300 -7.6222 -3.8022 20 6 3.9880 -7.0114 -4.7306 21 16 3.0513 -5.7211 -3.9888 22 6 2.5198 -4.3076 -1.1640 23 1 -0.4850 0.8400 0.0004 24 1 0.9647 -2.5165 2.0439 25 1 -0.3007 -1.8522 1.1935 26 1 2.6148 -3.4998 2.1081 27 1 4.2089 -5.3730 2.1326 28 1 4.7395 -6.5699 0.0501 29 1 5.1424 -7.5187 -1.6817 30 1 5.3826 -8.4507 -4.0345 31 1 3.9646 -7.2730 -5.7782 32 1 2.0449 -4.0073 -2.0863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309496259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:26 Heat of formation + Delta-G solvation = 47.699341 kcal Electronic energy + Delta-G solvation = -16032.783156 eV Core-core repulsion = 13470.146660 eV Total energy + Delta-G solvation = -2562.636496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98850 -37.37701 -34.74363 -31.98226 -31.26052 -29.65673 -27.64394 -25.97983 -24.24604 -22.87583 -21.73273 -20.30679 -18.47056 -17.29790 -16.49368 -16.05906 -15.23774 -14.95877 -14.49126 -14.11939 -13.53863 -13.32776 -12.90276 -12.74557 -12.58558 -12.06620 -12.04445 -11.89988 -11.42837 -11.15816 -11.00655 -10.74697 -10.61375 -10.35826 -10.06876 -9.61746 -9.29447 -8.69659 -8.40430 -8.13101 -7.56480 -7.22603 -6.12431 -4.29541 0.74416 1.72235 2.04017 2.13366 2.13555 2.99128 3.20748 3.28062 3.31923 4.27736 4.51426 4.88123 5.08294 5.10686 5.36655 5.45317 5.51826 5.64925 5.82598 5.98046 6.05597 6.23038 6.27363 6.48473 6.54925 6.64309 6.66296 6.98818 7.05850 7.15624 7.55136 7.70652 7.74592 8.05534 8.62982 8.88984 9.07769 9.42513 10.85100 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.005365 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.999296 B = 5217.560942 C = 5744.181975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.239 3.761 10 H 0.047 0.953 11 N -0.850 5.850 12 C -0.019 4.019 13 C -0.100 4.100 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.036 4.036 17 C -0.113 4.113 18 C -0.152 4.152 19 C -0.130 4.130 20 C -0.235 4.235 21 S 0.123 5.877 22 C -0.110 4.110 23 H 0.266 0.734 24 H 0.311 0.689 25 H 0.356 0.644 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.241 -11.983 -4.098 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.129 3.871 10 H 0.065 0.935 11 N -0.380 5.380 12 C -0.020 4.020 13 C -0.118 4.118 14 C -0.142 4.142 15 C -0.144 4.144 16 C -0.038 4.038 17 C -0.231 4.231 18 C -0.182 4.182 19 C -0.160 4.160 20 C -0.370 4.370 21 S 0.389 5.611 22 C -0.129 4.129 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.173 0.827 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.801 -11.540 -4.990 13.847 hybrid contribution 1.937 0.908 0.564 2.213 sum 7.738 -10.632 -4.426 13.875 Atomic orbital electron populations 1.69738 1.05853 1.27287 1.50305 1.25015 0.94943 0.99330 0.94283 0.86507 0.79826 0.82866 0.78324 1.20474 1.21097 1.19842 1.21808 0.93675 0.90932 1.52004 0.92532 1.18021 0.89034 0.88186 0.91896 0.93511 1.59536 1.18416 1.56147 1.03856 1.20396 0.95320 0.94645 0.91634 1.21077 0.95906 0.96298 0.98556 1.20968 0.98989 0.96857 0.97354 1.20866 1.00958 1.00736 0.91791 1.17957 0.99118 0.96564 0.90134 1.23173 1.02454 1.00856 0.96608 1.20260 1.01680 0.98052 0.98168 1.20005 1.01719 1.01962 0.92326 1.25697 1.04976 1.02841 1.03517 1.84414 1.43751 1.33400 0.99577 1.21066 0.98110 0.95161 0.98590 0.92400 0.87907 0.82737 0.86143 0.86584 0.86774 0.84359 0.84622 0.82168 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 11.53 55.43 0.64 -23.71 16 2 C 0.07 1.78 5.38 -17.82 -0.10 1.69 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.52 8.70 -34.44 -0.30 -14.82 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.24 5.91 2.95 -70.02 -0.21 5.70 16 10 H 0.05 1.28 8.00 -51.93 -0.42 0.86 16 11 N -0.85 -20.05 9.02 -6.65 -0.06 -20.11 16 12 C -0.02 -0.42 4.89 -104.68 -0.51 -0.93 16 13 C -0.10 -1.92 9.28 -39.50 -0.37 -2.29 16 14 C -0.12 -2.03 10.03 -39.64 -0.40 -2.43 16 15 C -0.12 -1.99 9.54 -39.19 -0.37 -2.36 16 16 C -0.04 -0.63 5.87 -104.98 -0.62 -1.25 16 17 C -0.11 -1.78 6.37 -36.88 -0.24 -2.01 16 18 C -0.15 -2.03 9.65 -40.90 -0.39 -2.42 16 19 C -0.13 -1.51 10.16 -41.30 -0.42 -1.93 16 20 C -0.23 -2.76 11.22 29.11 0.33 -2.43 16 21 S 0.12 1.75 22.26 -107.50 -2.39 -0.64 16 22 C -0.11 -2.21 9.22 -39.18 -0.36 -2.58 16 23 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.31 6.90 7.34 -39.29 -0.29 6.62 16 25 H 0.36 8.99 7.07 -39.29 -0.28 8.72 16 26 H 0.12 2.25 6.66 -52.49 -0.35 1.90 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.50 6.76 -52.49 -0.35 1.15 16 29 H 0.14 1.59 6.89 -52.49 -0.36 1.23 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.12 2.32 7.26 -52.49 -0.38 1.94 16 LS Contribution 287.13 15.07 4.33 4.33 Total: -1.00 -27.79 287.13 -9.70 -37.49 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -3.24 Total: 14.92 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -3.95 Total: -28.07 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.58 Total: -43.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.39 Total: -0.64 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.79 -9.70 -37.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309496259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.186 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds