Wall clock time and date at job start Mon Mar 30 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46898 * 109.47515 * 300.28298 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38382 * 119.92621 * 79.72740 * 12 9 7 14 14 C 1.38326 * 120.29029 * 179.76569 * 13 12 9 15 15 C 1.37987 * 120.14771 * 0.50924 * 14 13 12 16 16 C 1.39544 * 119.84879 * 359.74917 * 15 14 13 17 17 C 1.47830 * 120.14408 * 179.97438 * 16 15 14 18 18 C 1.34799 * 125.26978 * 0.02562 * 17 16 15 19 19 C 1.37958 * 114.70558 * 179.97438 * 18 17 16 20 20 C 1.33621 * 115.06544 * 359.97438 * 19 18 17 21 21 S 1.75856 * 109.75900 * 359.77737 * 20 19 18 22 22 C 1.37936 * 119.92657 * 260.00352 * 12 9 7 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99361 * 299.99455 * 11 9 7 25 25 H 1.00897 * 111.00235 * 63.94995 * 11 9 7 26 26 H 1.08002 * 119.85211 * 0.02562 * 13 12 9 27 27 H 1.08001 * 119.92950 * 180.25402 * 14 13 12 28 28 H 1.07994 * 120.07649 * 179.76423 * 15 14 13 29 29 H 1.08002 * 122.64398 * 359.97438 * 18 17 16 30 30 H 1.08001 * 122.46949 * 180.02562 * 19 18 17 31 31 H 1.08002 * 125.11807 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.07778 * 359.95636 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 7 0.4066 -2.5716 1.2051 12 6 2.2305 -3.6445 0.0104 13 6 2.8418 -4.0249 1.1921 14 6 3.7383 -5.0783 1.2062 15 6 4.0366 -5.7502 0.0385 16 6 3.4276 -5.3681 -1.1576 17 6 3.7429 -6.0830 -2.4126 18 6 4.6001 -7.1172 -2.5250 19 6 4.7300 -7.6222 -3.8022 20 6 3.9880 -7.0114 -4.7306 21 16 3.0513 -5.7211 -3.9888 22 6 2.5198 -4.3076 -1.1640 23 1 -0.4850 0.8400 0.0004 24 1 0.9647 -2.5165 2.0439 25 1 -0.3007 -1.8522 1.1935 26 1 2.6148 -3.4998 2.1081 27 1 4.2089 -5.3730 2.1326 28 1 4.7395 -6.5699 0.0501 29 1 5.1424 -7.5187 -1.6817 30 1 5.3826 -8.4507 -4.0345 31 1 3.9646 -7.2730 -5.7782 32 1 2.0449 -4.0073 -2.0863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309496259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:26 Heat of formation + Delta-G solvation = 32.018410 kcal Electronic energy + Delta-G solvation = -16033.463132 eV Core-core repulsion = 13470.146660 eV Total energy + Delta-G solvation = -2563.316472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37012 -38.48668 -36.54260 -33.73024 -32.69643 -31.25110 -28.84683 -27.96574 -25.46002 -24.46689 -23.09628 -21.74143 -19.58462 -18.72624 -18.39293 -17.41608 -16.72866 -16.35835 -16.15043 -15.59660 -14.95040 -14.89451 -14.37092 -14.04366 -13.90852 -13.45101 -13.43339 -13.19399 -13.01199 -12.84753 -12.80970 -12.41560 -12.09931 -11.95202 -11.60427 -11.33153 -10.75128 -10.49161 -9.65379 -9.47764 -9.20339 -8.80653 -8.14950 -6.41748 -0.39013 0.62482 0.67172 0.89297 1.13872 1.35158 1.36984 1.47156 1.94259 2.34226 3.00636 3.08205 3.69273 4.05558 4.11397 4.24212 4.33158 4.51187 4.59025 4.65673 4.72283 4.83902 4.98412 5.11336 5.21550 5.33162 5.39620 5.53706 5.58835 5.66113 5.71189 5.91330 6.09715 6.19398 6.60215 6.87977 7.08787 7.34953 8.79422 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.005365 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.999296 B = 5217.560942 C = 5744.181975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.559 4.559 8 H 0.046 0.954 9 C 0.243 3.757 10 H 0.005 0.995 11 N -0.841 5.841 12 C -0.048 4.048 13 C -0.119 4.119 14 C -0.111 4.111 15 C -0.119 4.119 16 C -0.031 4.031 17 C -0.155 4.155 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.212 4.212 21 S 0.068 5.932 22 C -0.136 4.136 23 H 0.269 0.731 24 H 0.320 0.680 25 H 0.345 0.655 26 H 0.119 0.881 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.191 0.809 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.914 -14.070 -4.095 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.064 0.936 9 C 0.133 3.867 10 H 0.023 0.977 11 N -0.370 5.370 12 C -0.049 4.049 13 C -0.138 4.138 14 C -0.128 4.128 15 C -0.138 4.138 16 C -0.032 4.032 17 C -0.272 4.272 18 C -0.159 4.159 19 C -0.164 4.164 20 C -0.348 4.348 21 S 0.334 5.666 22 C -0.156 4.156 23 H 0.078 0.922 24 H 0.130 0.870 25 H 0.160 0.840 26 H 0.137 0.863 27 H 0.174 0.826 28 H 0.172 0.828 29 H 0.181 0.819 30 H 0.191 0.809 31 H 0.208 0.792 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.478 -13.636 -4.976 16.810 hybrid contribution 1.162 1.394 0.447 1.869 sum 9.640 -12.243 -4.529 16.227 Atomic orbital electron populations 1.69841 1.06962 1.28089 1.50604 1.25755 0.95768 1.02379 0.93872 0.85530 0.78682 0.79041 0.78215 1.20389 1.20237 1.19508 1.21994 0.93245 0.92293 1.52318 0.93586 1.17787 0.89024 0.89413 0.90468 0.97732 1.59487 1.18148 1.55369 1.04019 1.20180 0.96302 0.94905 0.93506 1.21137 0.97278 0.97923 0.97430 1.21354 0.97273 0.94993 0.99210 1.21327 1.00659 1.01162 0.90697 1.18173 0.97709 0.95308 0.92041 1.23123 1.05187 1.02965 0.95932 1.20689 0.99472 0.96020 0.99765 1.20405 1.01981 1.02727 0.91332 1.26106 1.03058 1.00604 1.04988 1.84667 1.45494 1.35783 1.00687 1.21019 0.99990 0.97020 0.97532 0.92212 0.86952 0.84000 0.86271 0.82631 0.82797 0.81915 0.80874 0.79165 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 11.53 21.45 0.25 -51.32 16 2 C 0.02 1.24 5.38 84.65 0.46 1.69 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.56 -31.11 8.70 25.60 0.22 -30.88 16 8 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 9 C 0.24 12.82 2.95 43.42 0.13 12.94 16 10 H 0.00 0.28 8.00 -2.38 -0.02 0.26 16 11 N -0.84 -41.66 9.02 -174.95 -1.58 -43.24 16 12 C -0.05 -2.20 4.89 -19.90 -0.10 -2.30 16 13 C -0.12 -4.61 9.28 22.33 0.21 -4.41 16 14 C -0.11 -3.37 10.03 22.23 0.22 -3.15 16 15 C -0.12 -3.49 9.54 22.53 0.21 -3.28 16 16 C -0.03 -1.07 5.87 -20.10 -0.12 -1.19 16 17 C -0.16 -4.67 6.37 24.02 0.15 -4.52 16 18 C -0.13 -2.97 9.65 21.41 0.21 -2.76 16 19 C -0.13 -2.56 10.16 21.16 0.21 -2.34 16 20 C -0.21 -4.34 11.22 66.77 0.75 -3.59 16 21 S 0.07 1.95 22.26 -56.49 -1.26 0.69 16 22 C -0.14 -5.79 9.22 22.53 0.21 -5.58 16 23 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.32 14.72 7.34 -89.69 -0.66 14.06 16 25 H 0.35 18.29 7.07 -89.70 -0.63 17.65 16 26 H 0.12 4.51 6.66 -2.91 -0.02 4.49 16 27 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 28 H 0.15 3.26 6.76 -2.91 -0.02 3.24 16 29 H 0.16 2.87 6.89 -2.91 -0.02 2.85 16 30 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.19 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.10 4.37 7.26 -2.91 -0.02 4.35 16 Total: -1.00 -63.15 287.13 2.07 -61.08 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.13 Total: 36.64 kcal Atomic # 6 Polarization: -52.12 SS G_CDS: 2.77 Total: -49.35 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -1.33 Total: -94.55 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.26 Total: 0.69 kcal Total: -63.15 2.07 -61.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309496259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.099 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds