Wall clock time and date at job start Mon Mar 30 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48501 * 109.47306 * 90.00294 * 3 2 1 5 5 H 1.48509 * 109.46805 * 210.00094 * 3 2 1 6 6 H 1.48502 * 109.47330 * 329.99636 * 3 2 1 7 7 C 1.40015 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99764 * 17.62097 * 7 2 1 9 9 C 1.41313 * 120.00155 * 197.61700 * 7 2 1 10 10 C 1.40765 * 119.74908 * 189.44782 * 9 7 2 11 11 C 1.38160 * 119.20357 * 179.72650 * 10 9 7 12 12 C 1.38904 * 118.68286 * 0.53523 * 11 10 9 13 13 Cl 1.73598 * 120.28507 * 179.75015 * 12 11 10 14 14 C 1.40041 * 119.42995 * 359.72529 * 12 11 10 15 15 C 1.48286 * 119.61913 * 180.02562 * 14 12 11 16 16 C 1.39403 * 120.12794 * 324.70484 * 15 14 12 17 17 C 1.38001 * 119.87454 * 179.72468 * 16 15 14 18 18 C 1.38339 * 120.12364 * 0.57424 * 17 16 15 19 19 C 1.38337 * 120.25525 * 359.67756 * 18 17 16 20 20 C 1.38000 * 120.12738 * 0.04334 * 19 18 17 21 21 N 1.32218 * 120.75560 * 0.02562 * 14 12 11 22 22 H 0.96998 * 120.00421 * 174.69176 * 1 2 3 23 23 H 1.07994 * 120.39215 * 0.02562 * 10 9 7 24 24 H 1.08001 * 120.65497 * 180.24018 * 11 10 9 25 25 H 1.08005 * 120.05893 * 359.97438 * 16 15 14 26 26 H 1.07998 * 119.94074 * 180.29799 * 17 16 15 27 27 H 1.07991 * 119.87456 * 179.69991 * 18 17 16 28 28 H 1.07995 * 119.94048 * 180.02562 * 19 18 17 29 29 H 1.08001 * 120.06360 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0463 1.4001 5 1 3.5392 1.4400 -0.7001 6 1 1.4391 2.6526 -0.7001 7 6 2.0076 -1.2126 0.0005 8 1 1.5055 -2.1261 -0.2822 9 6 3.3710 -1.2412 0.3709 10 6 4.1219 -2.4166 0.1809 11 6 5.4555 -2.4303 0.5417 12 6 6.0089 -1.2816 1.0927 13 17 7.6787 -1.2548 1.5669 14 6 5.2084 -0.1450 1.2618 15 6 5.7951 1.0838 1.8490 16 6 6.7629 0.9888 2.8478 17 6 7.3095 2.1357 3.3866 18 6 6.8901 3.3781 2.9458 19 6 5.9262 3.4785 1.9586 20 6 5.3767 2.3384 1.4084 21 7 3.9357 -0.1551 0.9039 22 1 -0.4851 -0.8364 -0.0777 23 1 3.6623 -3.2955 -0.2464 24 1 6.0545 -3.3182 0.4027 25 1 7.0873 0.0194 3.1964 26 1 8.0628 2.0633 4.1571 27 1 7.3170 4.2730 3.3736 28 1 5.6028 4.4510 1.6179 29 1 4.6240 2.4180 0.6381 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309549629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:43 Heat of formation + Delta-G solvation = 31.531217 kcal Electronic energy + Delta-G solvation = -16346.388027 eV Core-core repulsion = 13645.173627 eV Total energy + Delta-G solvation = -2701.214399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36573 -38.02276 -35.76506 -34.00266 -32.18536 -31.13803 -30.49272 -29.00366 -25.57064 -23.37786 -22.43329 -21.24599 -20.40036 -18.57385 -17.00210 -15.68747 -15.49161 -15.27469 -14.47067 -14.24146 -13.82530 -13.28887 -13.00334 -12.88716 -12.55043 -12.19415 -12.15963 -11.59239 -11.42200 -11.09697 -10.73899 -10.70757 -10.26397 -9.97201 -9.66564 -9.36250 -8.93382 -8.56561 -8.48157 -8.02839 -7.68733 -7.47006 -4.98114 1.35617 1.80765 2.29996 2.51513 3.08318 3.39509 3.45715 3.75933 4.13218 4.19965 4.42515 4.92229 5.20383 5.27523 5.35741 5.47023 5.66829 5.84655 5.93111 6.13127 6.15848 6.26865 6.43177 6.53503 6.83094 6.85526 6.89267 6.93821 7.09007 7.23655 7.31617 7.39380 7.84560 8.01809 8.37674 9.20169 9.76132 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.010091 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.741622 B = 2774.167060 C = 4097.894598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.050 3.950 3 Si 1.126 2.874 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.319 1.319 7 C -0.462 4.462 8 H 0.088 0.912 9 C 0.247 3.753 10 C -0.249 4.249 11 C -0.034 4.034 12 C -0.213 4.213 13 Cl -0.104 7.104 14 C 0.227 3.773 15 C -0.034 4.034 16 C -0.096 4.096 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.091 4.091 21 N -0.549 5.549 22 H 0.288 0.712 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.136 0.864 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 2.752 3.054 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.174 4.174 3 Si 0.958 3.042 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.251 1.251 7 C -0.492 4.492 8 H 0.106 0.894 9 C 0.125 3.875 10 C -0.272 4.272 11 C -0.058 4.058 12 C -0.245 4.245 13 Cl -0.076 7.076 14 C 0.084 3.916 15 C -0.035 4.035 16 C -0.115 4.115 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.110 4.110 21 N -0.266 5.266 22 H 0.099 0.901 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.153 0.847 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.117 4.953 3.239 10.869 hybrid contribution 0.653 -2.787 -0.177 2.868 sum 9.770 2.166 3.062 10.465 Atomic orbital electron populations 1.70608 1.08288 1.33419 1.28457 1.27732 0.95188 1.06033 0.88466 0.82594 0.72561 0.70500 0.78548 1.19919 1.20434 1.25082 1.20799 0.93684 0.97379 1.37379 0.89409 1.18536 0.93417 0.86987 0.88585 1.21679 0.93721 1.00324 1.11428 1.20787 0.94839 0.95383 0.94770 1.20941 0.84802 0.97978 1.20800 1.98209 1.19638 1.98481 1.91263 1.19251 0.89233 0.90222 0.92936 1.18661 0.96400 0.91889 0.96575 1.21716 0.95011 0.99535 0.95212 1.20994 1.00899 0.92437 1.00701 1.21125 0.97787 0.97333 0.97573 1.21041 0.97917 0.98144 0.97883 1.21490 0.98429 0.91592 0.99453 1.67078 1.09649 1.28989 1.20929 0.90056 0.86771 0.86666 0.84684 0.86350 0.86532 0.86144 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.52 13.65 55.55 0.76 -19.76 15 2 C 0.05 1.30 5.51 -17.34 -0.10 1.20 15 3 Si 1.13 26.78 23.14 -169.99 -3.93 22.85 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.56 6.11 56.52 0.35 -6.21 15 6 H -0.32 -7.37 7.11 56.52 0.40 -6.96 15 7 C -0.46 -11.97 9.49 -37.75 -0.36 -12.33 15 8 H 0.09 2.23 8.06 -52.48 -0.42 1.81 15 9 C 0.25 6.21 6.24 -85.01 -0.53 5.68 15 10 C -0.25 -5.56 9.83 -38.66 -0.38 -5.94 15 11 C -0.03 -0.70 9.95 -39.36 -0.39 -1.09 15 12 C -0.21 -4.49 6.31 -38.66 -0.24 -4.74 15 13 Cl -0.10 -1.84 24.71 -51.86 -1.28 -3.12 15 14 C 0.23 5.18 6.49 -82.89 -0.54 4.64 15 15 C -0.03 -0.70 5.57 -104.90 -0.58 -1.29 15 16 C -0.10 -1.68 8.16 -39.23 -0.32 -2.00 15 17 C -0.13 -1.95 10.03 -39.63 -0.40 -2.35 15 18 C -0.12 -1.69 10.04 -39.51 -0.40 -2.09 15 19 C -0.13 -2.08 10.03 -39.63 -0.40 -2.48 15 20 C -0.09 -1.77 9.40 -39.24 -0.37 -2.14 15 21 N -0.55 -13.74 4.91 -7.65 -0.04 -13.77 15 22 H 0.29 7.11 8.73 -40.82 -0.36 6.75 15 23 H 0.11 2.33 8.06 -52.49 -0.42 1.90 15 24 H 0.12 2.01 8.06 -52.49 -0.42 1.59 15 25 H 0.14 2.30 5.56 -52.48 -0.29 2.01 15 26 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 27 H 0.12 1.27 8.06 -52.49 -0.42 0.84 15 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 29 H 0.13 2.57 4.20 -52.49 -0.22 2.35 15 LS Contribution 260.61 15.07 3.93 3.93 Total: -1.00 -26.86 260.61 -7.83 -34.69 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -2.26 Total: 0.11 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -5.00 Total: -24.92 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.72 Total: -33.53 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -3.93 Total: 22.85 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.28 Total: -3.12 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.86 -7.83 -34.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309549629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.217 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds