Wall clock time and date at job start Mon Mar 30 2020 06:27:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30758 * 1
3 3 Si 1.86794 * 120.00117 * 2 1
4 4 H 1.48501 * 109.47306 * 90.00294 * 3 2 1
5 5 H 1.48509 * 109.46805 * 210.00094 * 3 2 1
6 6 H 1.48502 * 109.47330 * 329.99636 * 3 2 1
7 7 C 1.40015 * 119.99742 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99764 * 17.62097 * 7 2 1
9 9 C 1.41313 * 120.00155 * 197.61700 * 7 2 1
10 10 C 1.40765 * 119.74908 * 189.44782 * 9 7 2
11 11 C 1.38160 * 119.20357 * 179.72650 * 10 9 7
12 12 C 1.38904 * 118.68286 * 0.53523 * 11 10 9
13 13 Cl 1.73598 * 120.28507 * 179.75015 * 12 11 10
14 14 C 1.40041 * 119.42995 * 359.72529 * 12 11 10
15 15 C 1.48286 * 119.61913 * 180.02562 * 14 12 11
16 16 C 1.39403 * 120.12794 * 324.70484 * 15 14 12
17 17 C 1.38001 * 119.87454 * 179.72468 * 16 15 14
18 18 C 1.38339 * 120.12364 * 0.57424 * 17 16 15
19 19 C 1.38337 * 120.25525 * 359.67756 * 18 17 16
20 20 C 1.38000 * 120.12738 * 0.04334 * 19 18 17
21 21 N 1.32218 * 120.75560 * 0.02562 * 14 12 11
22 22 H 0.96998 * 120.00421 * 174.69176 * 1 2 3
23 23 H 1.07994 * 120.39215 * 0.02562 * 10 9 7
24 24 H 1.08001 * 120.65497 * 180.24018 * 11 10 9
25 25 H 1.08005 * 120.05893 * 359.97438 * 16 15 14
26 26 H 1.07998 * 119.94074 * 180.29799 * 17 16 15
27 27 H 1.07991 * 119.87456 * 179.69991 * 18 17 16
28 28 H 1.07995 * 119.94048 * 180.02562 * 19 18 17
29 29 H 1.08001 * 120.06360 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3076 0.0000 0.0000
3 14 2.2416 1.6177 0.0000
4 1 2.4892 2.0463 1.4001
5 1 3.5392 1.4400 -0.7001
6 1 1.4391 2.6526 -0.7001
7 6 2.0076 -1.2126 0.0005
8 1 1.5055 -2.1261 -0.2822
9 6 3.3710 -1.2412 0.3709
10 6 4.1219 -2.4166 0.1809
11 6 5.4555 -2.4303 0.5417
12 6 6.0089 -1.2816 1.0927
13 17 7.6787 -1.2548 1.5669
14 6 5.2084 -0.1450 1.2618
15 6 5.7951 1.0838 1.8490
16 6 6.7629 0.9888 2.8478
17 6 7.3095 2.1357 3.3866
18 6 6.8901 3.3781 2.9458
19 6 5.9262 3.4785 1.9586
20 6 5.3767 2.3384 1.4084
21 7 3.9357 -0.1551 0.9039
22 1 -0.4851 -0.8364 -0.0777
23 1 3.6623 -3.2955 -0.2464
24 1 6.0545 -3.3182 0.4027
25 1 7.0873 0.0194 3.1964
26 1 8.0628 2.0633 4.1571
27 1 7.3170 4.2730 3.3736
28 1 5.6028 4.4510 1.6179
29 1 4.6240 2.4180 0.6381
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000309549629.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:27:43
Heat of formation + Delta-G solvation = 17.642393 kcal
Electronic energy + Delta-G solvation = -16346.990291 eV
Core-core repulsion = 13645.173627 eV
Total energy + Delta-G solvation = -2701.816664 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 259.046 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.97275 -39.47210 -37.34872 -35.86209 -33.74757 -32.86350 -31.79821 -30.56304
-27.36920 -24.94123 -23.87479 -22.81246 -21.94254 -20.47232 -18.44794 -17.36374
-17.05507 -16.76902 -16.12102 -15.76539 -15.34607 -14.92820 -14.57305 -14.38127
-14.27943 -13.88015 -13.53573 -13.22342 -13.06804 -12.59120 -12.35751 -12.19492
-11.88495 -11.85368 -11.34544 -11.05778 -10.60735 -10.20603 -9.85991 -9.74814
-9.45485 -9.19806 -6.89990 -0.11702 0.51854 0.53907 0.93512 1.39792
1.48719 1.56077 1.86679 2.31030 2.42961 2.93553 3.32720 3.47913
3.94695 4.13687 4.17448 4.29270 4.39618 4.45886 4.58952 4.73302
4.79510 5.07524 5.12883 5.17345 5.24047 5.31317 5.52278 5.60422
5.62716 5.69644 5.93065 6.11280 6.18310 6.48483 7.39620 7.82686
Molecular weight = 259.05amu
Principal moments of inertia in cm(-1)
A = 0.019046 B = 0.010091 C = 0.006831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1469.741622 B = 2774.167060 C = 4097.894598
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.813 5.813
2 C 0.027 3.973
3 Si 1.158 2.842
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.313 1.313
7 C -0.498 4.498
8 H 0.079 0.921
9 C 0.233 3.767
10 C -0.259 4.259
11 C -0.028 4.028
12 C -0.207 4.207
13 Cl -0.067 7.067
14 C 0.205 3.795
15 C -0.070 4.070
16 C -0.104 4.104
17 C -0.124 4.124
18 C -0.105 4.105
19 C -0.132 4.132
20 C -0.121 4.121
21 N -0.571 5.571
22 H 0.287 0.713
23 H 0.129 0.871
24 H 0.153 0.847
25 H 0.136 0.864
26 H 0.157 0.843
27 H 0.161 0.839
28 H 0.148 0.852
29 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.208 3.707 4.495 14.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.435 5.435
2 C -0.193 4.193
3 Si 0.988 3.012
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.244 1.244
7 C -0.530 4.530
8 H 0.097 0.903
9 C 0.110 3.890
10 C -0.281 4.281
11 C -0.052 4.052
12 C -0.238 4.238
13 Cl -0.039 7.039
14 C 0.064 3.936
15 C -0.071 4.071
16 C -0.123 4.123
17 C -0.142 4.142
18 C -0.122 4.122
19 C -0.149 4.149
20 C -0.140 4.140
21 N -0.289 5.289
22 H 0.099 0.901
23 H 0.147 0.853
24 H 0.170 0.830
25 H 0.154 0.846
26 H 0.174 0.826
27 H 0.179 0.821
28 H 0.165 0.835
29 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 12.468 5.907 4.685 14.570
hybrid contribution -0.022 -3.086 -0.501 3.127
sum 12.446 2.821 4.185 13.430
Atomic orbital electron populations
1.70618 1.08463 1.33425 1.31027 1.28259 0.95461 1.07416 0.88165
0.82173 0.71635 0.69352 0.78024 1.20590 1.21225 1.24421 1.20763
0.94674 0.97162 1.40401 0.90319 1.18786 0.93549 0.88241 0.88464
1.21881 0.94614 0.99990 1.11655 1.21183 0.94338 0.96460 0.93176
1.21229 0.86622 0.97481 1.18479 1.98216 1.16398 1.98425 1.90860
1.19840 0.88842 0.92128 0.92832 1.18774 0.98435 0.91207 0.98698
1.21802 0.94730 1.00921 0.94828 1.21453 1.00630 0.91611 1.00521
1.21634 0.96007 0.98812 0.95794 1.21398 0.97734 0.98043 0.97767
1.21527 0.99280 0.92868 1.00302 1.67014 1.11150 1.29307 1.21468
0.90135 0.85261 0.82963 0.84596 0.82572 0.82139 0.83467 0.87889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -44.23 13.65 21.84 0.30 -43.93 15
2 C 0.03 1.46 5.51 85.28 0.47 1.93 15
3 Si 1.16 56.67 23.14 68.60 1.59 58.26 15
4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 15
5 H -0.28 -14.01 6.11 99.48 0.61 -13.40 15
6 H -0.31 -14.60 7.11 99.48 0.71 -13.90 15
7 C -0.50 -27.05 9.49 23.46 0.22 -26.83 15
8 H 0.08 4.24 8.06 -2.91 -0.02 4.22 15
9 C 0.23 12.04 6.24 40.26 0.25 12.29 15
10 C -0.26 -11.52 9.83 22.87 0.22 -11.30 15
11 C -0.03 -1.09 9.95 22.41 0.22 -0.86 15
12 C -0.21 -8.38 6.31 22.87 0.14 -8.23 15
13 Cl -0.07 -2.18 24.71 -2.72 -0.07 -2.25 15
14 C 0.20 9.33 6.49 42.20 0.27 9.61 15
15 C -0.07 -2.81 5.57 -20.04 -0.11 -2.92 15
16 C -0.10 -3.38 8.16 22.49 0.18 -3.19 15
17 C -0.12 -3.10 10.03 22.24 0.22 -2.87 15
18 C -0.10 -2.43 10.04 22.32 0.22 -2.21 15
19 C -0.13 -3.78 10.03 22.24 0.22 -3.55 15
20 C -0.12 -4.64 9.40 22.49 0.21 -4.42 15
21 N -0.57 -29.20 4.91 -178.12 -0.87 -30.07 15
22 H 0.29 14.95 8.73 -92.71 -0.81 14.14 15
23 H 0.13 5.23 8.06 -2.91 -0.02 5.20 15
24 H 0.15 4.76 8.06 -2.91 -0.02 4.74 15
25 H 0.14 4.26 5.56 -2.91 -0.02 4.24 15
26 H 0.16 2.71 8.06 -2.91 -0.02 2.69 15
27 H 0.16 2.39 8.06 -2.92 -0.02 2.37 15
28 H 0.15 3.32 8.06 -2.91 -0.02 3.30 15
29 H 0.10 4.32 4.20 -2.91 -0.01 4.31 15
Total: -1.00 -60.38 260.61 4.75 -55.63
By element:
Atomic # 1 Polarization: 3.89 SS G_CDS: 1.04 Total: 4.93 kcal
Atomic # 6 Polarization: -45.33 SS G_CDS: 2.76 Total: -42.57 kcal
Atomic # 7 Polarization: -73.43 SS G_CDS: -0.58 Total: -74.01 kcal
Atomic # 14 Polarization: 56.67 SS G_CDS: 1.59 Total: 58.26 kcal
Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.25 kcal
Total: -60.38 4.75 -55.63 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309549629.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.272 kcal
(2) G-P(sol) polarization free energy of solvation -60.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.642 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds