Wall clock time and date at job start Mon Mar 30 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48501 * 109.47306 * 90.00294 * 3 2 1 5 5 H 1.48509 * 109.46805 * 210.00094 * 3 2 1 6 6 H 1.48502 * 109.47330 * 329.99636 * 3 2 1 7 7 C 1.40015 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99764 * 17.62097 * 7 2 1 9 9 C 1.41313 * 120.00155 * 197.61700 * 7 2 1 10 10 C 1.40765 * 119.74908 * 189.44782 * 9 7 2 11 11 C 1.38160 * 119.20357 * 179.72650 * 10 9 7 12 12 C 1.38904 * 118.68286 * 0.53523 * 11 10 9 13 13 Cl 1.73598 * 120.28507 * 179.75015 * 12 11 10 14 14 C 1.40041 * 119.42995 * 359.72529 * 12 11 10 15 15 C 1.48286 * 119.61913 * 180.02562 * 14 12 11 16 16 C 1.39403 * 120.12794 * 324.70484 * 15 14 12 17 17 C 1.38001 * 119.87454 * 179.72468 * 16 15 14 18 18 C 1.38339 * 120.12364 * 0.57424 * 17 16 15 19 19 C 1.38337 * 120.25525 * 359.67756 * 18 17 16 20 20 C 1.38000 * 120.12738 * 0.04334 * 19 18 17 21 21 N 1.32218 * 120.75560 * 0.02562 * 14 12 11 22 22 H 0.96998 * 120.00421 * 174.69176 * 1 2 3 23 23 H 1.07994 * 120.39215 * 0.02562 * 10 9 7 24 24 H 1.08001 * 120.65497 * 180.24018 * 11 10 9 25 25 H 1.08005 * 120.05893 * 359.97438 * 16 15 14 26 26 H 1.07998 * 119.94074 * 180.29799 * 17 16 15 27 27 H 1.07991 * 119.87456 * 179.69991 * 18 17 16 28 28 H 1.07995 * 119.94048 * 180.02562 * 19 18 17 29 29 H 1.08001 * 120.06360 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0463 1.4001 5 1 3.5392 1.4400 -0.7001 6 1 1.4391 2.6526 -0.7001 7 6 2.0076 -1.2126 0.0005 8 1 1.5055 -2.1261 -0.2822 9 6 3.3710 -1.2412 0.3709 10 6 4.1219 -2.4166 0.1809 11 6 5.4555 -2.4303 0.5417 12 6 6.0089 -1.2816 1.0927 13 17 7.6787 -1.2548 1.5669 14 6 5.2084 -0.1450 1.2618 15 6 5.7951 1.0838 1.8490 16 6 6.7629 0.9888 2.8478 17 6 7.3095 2.1357 3.3866 18 6 6.8901 3.3781 2.9458 19 6 5.9262 3.4785 1.9586 20 6 5.3767 2.3384 1.4084 21 7 3.9357 -0.1551 0.9039 22 1 -0.4851 -0.8364 -0.0777 23 1 3.6623 -3.2955 -0.2464 24 1 6.0545 -3.3182 0.4027 25 1 7.0873 0.0194 3.1964 26 1 8.0628 2.0633 4.1571 27 1 7.3170 4.2730 3.3736 28 1 5.6028 4.4510 1.6179 29 1 4.6240 2.4180 0.6381 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309549629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:43 Heat of formation + Delta-G solvation = 17.642393 kcal Electronic energy + Delta-G solvation = -16346.990291 eV Core-core repulsion = 13645.173627 eV Total energy + Delta-G solvation = -2701.816664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97275 -39.47210 -37.34872 -35.86209 -33.74757 -32.86350 -31.79821 -30.56304 -27.36920 -24.94123 -23.87479 -22.81246 -21.94254 -20.47232 -18.44794 -17.36374 -17.05507 -16.76902 -16.12102 -15.76539 -15.34607 -14.92820 -14.57305 -14.38127 -14.27943 -13.88015 -13.53573 -13.22342 -13.06804 -12.59120 -12.35751 -12.19492 -11.88495 -11.85368 -11.34544 -11.05778 -10.60735 -10.20603 -9.85991 -9.74814 -9.45485 -9.19806 -6.89990 -0.11702 0.51854 0.53907 0.93512 1.39792 1.48719 1.56077 1.86679 2.31030 2.42961 2.93553 3.32720 3.47913 3.94695 4.13687 4.17448 4.29270 4.39618 4.45886 4.58952 4.73302 4.79510 5.07524 5.12883 5.17345 5.24047 5.31317 5.52278 5.60422 5.62716 5.69644 5.93065 6.11280 6.18310 6.48483 7.39620 7.82686 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.010091 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.741622 B = 2774.167060 C = 4097.894598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.027 3.973 3 Si 1.158 2.842 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.313 1.313 7 C -0.498 4.498 8 H 0.079 0.921 9 C 0.233 3.767 10 C -0.259 4.259 11 C -0.028 4.028 12 C -0.207 4.207 13 Cl -0.067 7.067 14 C 0.205 3.795 15 C -0.070 4.070 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.105 4.105 19 C -0.132 4.132 20 C -0.121 4.121 21 N -0.571 5.571 22 H 0.287 0.713 23 H 0.129 0.871 24 H 0.153 0.847 25 H 0.136 0.864 26 H 0.157 0.843 27 H 0.161 0.839 28 H 0.148 0.852 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.208 3.707 4.495 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.193 4.193 3 Si 0.988 3.012 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.244 1.244 7 C -0.530 4.530 8 H 0.097 0.903 9 C 0.110 3.890 10 C -0.281 4.281 11 C -0.052 4.052 12 C -0.238 4.238 13 Cl -0.039 7.039 14 C 0.064 3.936 15 C -0.071 4.071 16 C -0.123 4.123 17 C -0.142 4.142 18 C -0.122 4.122 19 C -0.149 4.149 20 C -0.140 4.140 21 N -0.289 5.289 22 H 0.099 0.901 23 H 0.147 0.853 24 H 0.170 0.830 25 H 0.154 0.846 26 H 0.174 0.826 27 H 0.179 0.821 28 H 0.165 0.835 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.468 5.907 4.685 14.570 hybrid contribution -0.022 -3.086 -0.501 3.127 sum 12.446 2.821 4.185 13.430 Atomic orbital electron populations 1.70618 1.08463 1.33425 1.31027 1.28259 0.95461 1.07416 0.88165 0.82173 0.71635 0.69352 0.78024 1.20590 1.21225 1.24421 1.20763 0.94674 0.97162 1.40401 0.90319 1.18786 0.93549 0.88241 0.88464 1.21881 0.94614 0.99990 1.11655 1.21183 0.94338 0.96460 0.93176 1.21229 0.86622 0.97481 1.18479 1.98216 1.16398 1.98425 1.90860 1.19840 0.88842 0.92128 0.92832 1.18774 0.98435 0.91207 0.98698 1.21802 0.94730 1.00921 0.94828 1.21453 1.00630 0.91611 1.00521 1.21634 0.96007 0.98812 0.95794 1.21398 0.97734 0.98043 0.97767 1.21527 0.99280 0.92868 1.00302 1.67014 1.11150 1.29307 1.21468 0.90135 0.85261 0.82963 0.84596 0.82572 0.82139 0.83467 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.23 13.65 21.84 0.30 -43.93 15 2 C 0.03 1.46 5.51 85.28 0.47 1.93 15 3 Si 1.16 56.67 23.14 68.60 1.59 58.26 15 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 15 5 H -0.28 -14.01 6.11 99.48 0.61 -13.40 15 6 H -0.31 -14.60 7.11 99.48 0.71 -13.90 15 7 C -0.50 -27.05 9.49 23.46 0.22 -26.83 15 8 H 0.08 4.24 8.06 -2.91 -0.02 4.22 15 9 C 0.23 12.04 6.24 40.26 0.25 12.29 15 10 C -0.26 -11.52 9.83 22.87 0.22 -11.30 15 11 C -0.03 -1.09 9.95 22.41 0.22 -0.86 15 12 C -0.21 -8.38 6.31 22.87 0.14 -8.23 15 13 Cl -0.07 -2.18 24.71 -2.72 -0.07 -2.25 15 14 C 0.20 9.33 6.49 42.20 0.27 9.61 15 15 C -0.07 -2.81 5.57 -20.04 -0.11 -2.92 15 16 C -0.10 -3.38 8.16 22.49 0.18 -3.19 15 17 C -0.12 -3.10 10.03 22.24 0.22 -2.87 15 18 C -0.10 -2.43 10.04 22.32 0.22 -2.21 15 19 C -0.13 -3.78 10.03 22.24 0.22 -3.55 15 20 C -0.12 -4.64 9.40 22.49 0.21 -4.42 15 21 N -0.57 -29.20 4.91 -178.12 -0.87 -30.07 15 22 H 0.29 14.95 8.73 -92.71 -0.81 14.14 15 23 H 0.13 5.23 8.06 -2.91 -0.02 5.20 15 24 H 0.15 4.76 8.06 -2.91 -0.02 4.74 15 25 H 0.14 4.26 5.56 -2.91 -0.02 4.24 15 26 H 0.16 2.71 8.06 -2.91 -0.02 2.69 15 27 H 0.16 2.39 8.06 -2.92 -0.02 2.37 15 28 H 0.15 3.32 8.06 -2.91 -0.02 3.30 15 29 H 0.10 4.32 4.20 -2.91 -0.01 4.31 15 Total: -1.00 -60.38 260.61 4.75 -55.63 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.04 Total: 4.93 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 2.76 Total: -42.57 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -0.58 Total: -74.01 kcal Atomic # 14 Polarization: 56.67 SS G_CDS: 1.59 Total: 58.26 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.25 kcal Total: -60.38 4.75 -55.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309549629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.272 kcal (2) G-P(sol) polarization free energy of solvation -60.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds