Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46980 * 2 1 4 4 N 1.46502 * 109.47247 * 119.99833 * 2 1 3 5 5 C 1.36932 * 120.00009 * 295.34274 * 4 2 1 6 6 H 1.08001 * 120.00186 * 40.06295 * 5 4 2 7 7 C 1.38815 * 119.99678 * 220.33390 * 5 4 2 8 8 N 1.31616 * 120.00268 * 18.97150 * 7 5 4 9 9 Si 1.86799 * 119.99744 * 198.97147 * 7 5 4 10 10 H 1.48502 * 109.47388 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47319 * 120.00236 * 9 7 5 12 12 H 1.48500 * 109.47279 * 240.00204 * 9 7 5 13 13 C 1.46500 * 119.99830 * 115.34147 * 4 2 1 14 14 C 1.50694 * 109.47497 * 270.00051 * 13 4 2 15 15 C 1.33349 * 122.53638 * 269.71678 * 14 13 4 16 16 S 1.75878 * 109.62032 * 179.86616 * 15 14 13 17 17 C 1.75877 * 90.98280 * 0.32802 * 16 15 14 18 18 Cl 1.73604 * 125.21098 * 179.78017 * 17 16 15 19 19 C 1.33501 * 109.58390 * 359.81109 * 17 16 15 20 20 H 1.08997 * 109.47123 * 306.61757 * 1 2 3 21 21 H 1.09002 * 109.47612 * 66.61833 * 1 2 3 22 22 H 1.09001 * 109.46971 * 186.62107 * 1 2 3 23 23 H 1.09001 * 109.47412 * 240.00051 * 2 1 3 24 24 H 1.09001 * 109.47087 * 179.59337 * 3 2 1 25 25 H 1.09003 * 109.47316 * 299.58639 * 3 2 1 26 26 H 1.09002 * 109.47492 * 59.59567 * 3 2 1 27 27 H 0.97000 * 119.99938 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47135 * 30.00149 * 13 4 2 29 29 H 1.08994 * 109.47042 * 149.99786 * 13 4 2 30 30 H 1.07998 * 125.18886 * 359.97438 * 15 14 13 31 31 H 1.07999 * 122.55720 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7680 -0.1697 2.4376 6 1 0.8052 0.2687 2.6552 7 6 2.7536 -0.2002 3.4146 8 7 4.0133 -0.3712 3.0736 9 14 2.2921 0.0016 5.2134 10 1 0.8223 0.1784 5.3306 11 1 2.7076 -1.2070 5.9697 12 1 2.9795 1.1944 5.7701 13 6 2.7745 -1.9384 1.0642 14 6 1.8232 -3.1069 1.0856 15 6 1.4725 -3.7257 2.2135 16 16 0.3517 -5.0307 1.8474 17 6 0.4317 -4.6583 0.1303 18 17 -0.4236 -5.5076 -1.1190 19 6 1.2515 -3.6230 -0.0653 20 1 -0.3633 0.6130 0.8248 21 1 -0.3634 0.4078 -0.9433 22 1 -0.3633 -1.0208 0.1185 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 0.0073 25 1 1.6826 1.9542 -0.8937 26 1 1.6707 1.9585 0.8863 27 1 4.7020 -0.3921 3.7564 28 1 3.3225 -1.9332 0.1219 29 1 3.4772 -2.0267 1.8926 30 1 1.8219 -3.4641 3.2014 31 1 1.4532 -3.2186 -1.0462 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378993546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = 39.066637 kcal Electronic energy + Delta-G solvation = -15540.876391 eV Core-core repulsion = 12975.432703 eV Total energy + Delta-G solvation = -2565.443688 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.04514 -36.54585 -35.68778 -32.42487 -30.34660 -28.43520 -26.20220 -26.07520 -23.53475 -22.00935 -19.56503 -18.49558 -17.35632 -16.13484 -15.28377 -14.67896 -14.29131 -13.69334 -13.35242 -13.07050 -12.80293 -12.59651 -12.26484 -11.92955 -11.50445 -11.33190 -11.27405 -11.06939 -10.84077 -10.77110 -10.49677 -10.34878 -10.23514 -10.02825 -9.85756 -9.61042 -8.54895 -8.18344 -7.84031 -6.58578 -5.85375 -3.43937 1.37129 1.56371 2.34213 2.65756 3.24128 3.30986 3.39609 3.42632 4.42989 5.27893 5.46291 5.73003 5.86125 5.94036 5.98887 6.21733 6.32221 6.43724 6.44962 6.55336 6.71176 6.78102 6.81817 6.93362 7.17541 7.21879 7.34043 7.56294 7.80195 8.50018 9.13796 9.74579 10.35455 11.14843 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.007731 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.261256 B = 3621.009116 C = 4430.849580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 C -0.144 4.144 4 N -0.568 5.568 5 C -0.246 4.246 6 H 0.059 0.941 7 C 0.015 3.985 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.197 3.803 14 C -0.096 4.096 15 C -0.180 4.180 16 S 0.080 5.920 17 C -0.159 4.159 18 Cl -0.038 7.038 19 C -0.094 4.094 20 H 0.050 0.950 21 H 0.035 0.965 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.255 0.745 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.166 0.834 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -6.606 -5.407 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.058 3.942 3 C -0.203 4.203 4 N -0.287 5.287 5 C -0.377 4.377 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.068 3.932 14 C -0.109 4.109 15 C -0.316 4.316 16 S 0.341 5.659 17 C -0.301 4.301 18 Cl -0.010 7.010 19 C -0.128 4.128 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.121 0.879 30 H 0.183 0.817 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.568 -7.728 -4.562 10.561 hybrid contribution 0.308 1.039 0.095 1.087 sum -5.260 -6.689 -4.467 9.610 Atomic orbital electron populations 1.22199 0.98779 1.00885 0.99501 1.20419 0.91958 0.92306 0.89492 1.22022 1.01045 0.97653 0.99556 1.43816 1.63939 1.19482 1.01503 1.18943 0.95701 1.35119 0.87901 0.92346 1.25223 0.94670 0.99872 0.98760 1.69974 0.98885 1.51511 1.32230 0.86440 0.78373 0.77556 0.85786 1.20015 1.21389 1.21556 1.19785 0.91107 0.80684 1.01596 1.20161 1.01842 0.98653 0.90287 1.25516 1.03182 0.99689 1.03228 1.84011 1.48418 1.35765 0.97703 1.24996 1.07485 1.04011 0.93633 1.98313 1.75832 1.76394 1.50482 1.20210 0.96830 0.94941 1.00775 0.93082 0.94620 0.93555 0.93692 0.93138 0.95147 0.92429 0.93513 0.94481 0.87927 0.81678 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.13 37.15 0.34 -2.54 16 2 C 0.16 3.32 3.37 -67.93 -0.23 3.10 16 3 C -0.14 -2.84 9.08 37.16 0.34 -2.50 16 4 N -0.57 -13.05 2.33 -167.03 -0.39 -13.44 16 5 C -0.25 -6.24 8.06 -15.06 -0.12 -6.36 16 6 H 0.06 1.53 7.22 -52.49 -0.38 1.15 16 7 C 0.02 0.40 4.99 -17.43 -0.09 0.31 16 8 N -0.88 -23.76 11.52 55.49 0.64 -23.12 16 9 Si 0.89 20.56 29.60 -169.99 -5.03 15.53 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.20 4.30 5.52 -5.20 -0.03 4.27 16 14 C -0.10 -1.85 5.38 -106.25 -0.57 -2.42 16 15 C -0.18 -3.36 10.97 29.02 0.32 -3.05 16 16 S 0.08 1.29 23.34 -107.50 -2.51 -1.22 16 17 C -0.16 -2.59 7.10 29.07 0.21 -2.38 16 18 Cl -0.04 -0.54 29.29 -51.86 -1.52 -2.06 16 19 C -0.09 -1.63 9.93 -41.15 -0.41 -2.04 16 20 H 0.05 1.00 7.46 -51.93 -0.39 0.61 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.86 7.77 -51.93 -0.40 0.45 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 1.22 7.58 -51.93 -0.39 0.83 16 27 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 29 H 0.10 2.52 5.60 -51.93 -0.29 2.23 16 30 H 0.17 3.19 8.06 -52.49 -0.42 2.76 16 31 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 291.43 15.07 4.39 4.39 Total: -1.00 -25.67 291.43 -8.60 -34.26 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.93 Total: -0.73 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.25 Total: -13.62 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.25 Total: -36.56 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.22 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.52 Total: -2.06 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.67 -8.60 -34.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378993546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.331 kcal (2) G-P(sol) polarization free energy of solvation -25.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds