Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46980 * 2 1 4 4 N 1.46502 * 109.47247 * 119.99833 * 2 1 3 5 5 C 1.36932 * 120.00009 * 295.34274 * 4 2 1 6 6 H 1.08001 * 120.00186 * 40.06295 * 5 4 2 7 7 C 1.38815 * 119.99678 * 220.33390 * 5 4 2 8 8 N 1.31616 * 120.00268 * 18.97150 * 7 5 4 9 9 Si 1.86799 * 119.99744 * 198.97147 * 7 5 4 10 10 H 1.48502 * 109.47388 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47319 * 120.00236 * 9 7 5 12 12 H 1.48500 * 109.47279 * 240.00204 * 9 7 5 13 13 C 1.46500 * 119.99830 * 115.34147 * 4 2 1 14 14 C 1.50694 * 109.47497 * 270.00051 * 13 4 2 15 15 C 1.33349 * 122.53638 * 269.71678 * 14 13 4 16 16 S 1.75878 * 109.62032 * 179.86616 * 15 14 13 17 17 C 1.75877 * 90.98280 * 0.32802 * 16 15 14 18 18 Cl 1.73604 * 125.21098 * 179.78017 * 17 16 15 19 19 C 1.33501 * 109.58390 * 359.81109 * 17 16 15 20 20 H 1.08997 * 109.47123 * 306.61757 * 1 2 3 21 21 H 1.09002 * 109.47612 * 66.61833 * 1 2 3 22 22 H 1.09001 * 109.46971 * 186.62107 * 1 2 3 23 23 H 1.09001 * 109.47412 * 240.00051 * 2 1 3 24 24 H 1.09001 * 109.47087 * 179.59337 * 3 2 1 25 25 H 1.09003 * 109.47316 * 299.58639 * 3 2 1 26 26 H 1.09002 * 109.47492 * 59.59567 * 3 2 1 27 27 H 0.97000 * 119.99938 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47135 * 30.00149 * 13 4 2 29 29 H 1.08994 * 109.47042 * 149.99786 * 13 4 2 30 30 H 1.07998 * 125.18886 * 359.97438 * 15 14 13 31 31 H 1.07999 * 122.55720 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7680 -0.1697 2.4376 6 1 0.8052 0.2687 2.6552 7 6 2.7536 -0.2002 3.4146 8 7 4.0133 -0.3712 3.0736 9 14 2.2921 0.0016 5.2134 10 1 0.8223 0.1784 5.3306 11 1 2.7076 -1.2070 5.9697 12 1 2.9795 1.1944 5.7701 13 6 2.7745 -1.9384 1.0642 14 6 1.8232 -3.1069 1.0856 15 6 1.4725 -3.7257 2.2135 16 16 0.3517 -5.0307 1.8474 17 6 0.4317 -4.6583 0.1303 18 17 -0.4236 -5.5076 -1.1190 19 6 1.2515 -3.6230 -0.0653 20 1 -0.3633 0.6130 0.8248 21 1 -0.3634 0.4078 -0.9433 22 1 -0.3633 -1.0208 0.1185 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 0.0073 25 1 1.6826 1.9542 -0.8937 26 1 1.6707 1.9585 0.8863 27 1 4.7020 -0.3921 3.7564 28 1 3.3225 -1.9332 0.1219 29 1 3.4772 -2.0267 1.8926 30 1 1.8219 -3.4641 3.2014 31 1 1.4532 -3.2186 -1.0462 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378993546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = 27.753354 kcal Electronic energy + Delta-G solvation = -15541.366972 eV Core-core repulsion = 12975.432703 eV Total energy + Delta-G solvation = -2565.934268 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.54782 -37.90488 -37.19024 -34.24532 -32.02331 -29.97065 -27.87715 -27.70567 -25.25859 -23.49257 -21.28424 -19.94834 -18.80827 -17.88931 -16.94720 -16.25170 -16.01737 -15.45316 -14.83563 -14.47498 -14.32614 -14.09943 -13.79303 -13.41812 -13.14925 -13.04662 -12.91648 -12.63324 -12.53830 -12.24377 -12.16843 -11.89152 -11.77631 -11.71914 -11.48297 -11.26743 -10.49238 -9.52743 -9.22351 -8.45685 -7.77671 -5.40322 -0.01315 0.24524 0.95512 1.33418 1.42837 1.48994 1.56396 1.80709 2.53382 3.31357 3.79994 4.30137 4.35942 4.40894 4.54977 4.66616 4.78075 4.83894 4.97691 5.04349 5.16452 5.20905 5.22982 5.40349 5.60303 5.63584 5.70648 5.79883 5.86425 6.56530 7.24010 7.91468 8.46638 9.18492 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.007731 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.261256 B = 3621.009116 C = 4430.849580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.157 3.843 3 C -0.135 4.135 4 N -0.581 5.581 5 C -0.242 4.242 6 H 0.047 0.953 7 C -0.025 4.025 8 N -0.912 5.912 9 Si 0.938 3.062 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.294 1.294 13 C 0.202 3.798 14 C -0.102 4.102 15 C -0.202 4.202 16 S 0.134 5.866 17 C -0.157 4.157 18 Cl -0.013 7.013 19 C -0.103 4.103 20 H 0.035 0.965 21 H 0.066 0.934 22 H 0.037 0.963 23 H 0.060 0.940 24 H 0.028 0.972 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.250 0.750 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 -7.529 -6.544 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.051 3.949 3 C -0.193 4.193 4 N -0.301 5.301 5 C -0.373 4.373 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.556 5.556 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.221 1.221 13 C 0.073 3.927 14 C -0.116 4.116 15 C -0.339 4.339 16 S 0.395 5.605 17 C -0.300 4.300 18 Cl 0.015 6.985 19 C -0.137 4.137 20 H 0.054 0.946 21 H 0.085 0.915 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.133 -8.664 -5.710 12.592 hybrid contribution 0.724 1.233 0.361 1.475 sum -6.410 -7.431 -5.349 11.177 Atomic orbital electron populations 1.22041 0.97237 1.00260 1.00506 1.20627 0.93070 0.92282 0.88951 1.21924 0.99525 0.97711 1.00187 1.43980 1.64071 1.20418 1.01661 1.18950 0.94934 1.34322 0.89089 0.93520 1.25696 0.94647 1.00572 1.01343 1.70077 0.99452 1.53371 1.32664 0.85669 0.77957 0.77003 0.82623 1.19752 1.21426 1.22106 1.19545 0.91196 0.81545 1.00412 1.19905 1.01784 0.98407 0.91472 1.25521 1.04488 1.01186 1.02672 1.83801 1.46196 1.33408 0.97056 1.25145 1.06781 1.03506 0.94611 1.98327 1.75103 1.75678 1.49367 1.20144 0.97400 0.95564 1.00542 0.94628 0.91544 0.94352 0.92219 0.95277 0.91687 0.94562 0.94009 0.94079 0.91018 0.83034 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.13 71.98 0.66 -4.33 16 2 C 0.16 6.13 3.37 44.99 0.15 6.28 16 3 C -0.13 -5.20 9.08 71.98 0.65 -4.55 16 4 N -0.58 -26.80 2.33 -682.36 -1.59 -28.39 16 5 C -0.24 -12.42 8.06 84.04 0.68 -11.74 16 6 H 0.05 2.48 7.22 -2.91 -0.02 2.46 16 7 C -0.02 -1.30 4.99 84.86 0.42 -0.88 16 8 N -0.91 -50.39 11.52 21.65 0.25 -50.14 16 9 Si 0.94 43.02 29.60 68.60 2.03 45.05 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 C 0.20 8.89 5.52 85.63 0.47 9.36 16 14 C -0.10 -3.89 5.38 -20.92 -0.11 -4.00 16 15 C -0.20 -7.49 10.97 66.71 0.73 -6.75 16 16 S 0.13 4.02 23.34 -56.49 -1.32 2.70 16 17 C -0.16 -4.74 7.10 66.75 0.47 -4.26 16 18 Cl -0.01 -0.33 29.29 -2.72 -0.08 -0.41 16 19 C -0.10 -3.40 9.93 21.25 0.21 -3.19 16 20 H 0.03 1.34 7.46 -2.39 -0.02 1.32 16 21 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 22 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 23 H 0.06 2.16 7.77 -2.39 -0.02 2.14 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.52 7.58 -2.39 -0.02 1.50 16 27 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 28 H 0.04 1.72 7.87 -2.38 -0.02 1.70 16 29 H 0.07 3.65 5.60 -2.39 -0.01 3.63 16 30 H 0.15 5.98 8.06 -2.91 -0.02 5.95 16 31 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -54.45 291.43 4.75 -49.70 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.12 Total: 5.54 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 4.34 Total: -24.06 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -1.34 Total: -78.52 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.32 Total: 2.70 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -54.45 4.75 -49.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378993546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.452 kcal (2) G-P(sol) polarization free energy of solvation -54.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds