Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.33342 * 122.53970 * 90.02635 * 15 14 12 17 17 S 1.75874 * 109.62556 * 179.97438 * 16 15 14 18 18 C 1.75887 * 90.97962 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 125.20803 * 179.97438 * 18 17 16 20 20 C 1.33501 * 109.57942 * 359.75619 * 18 17 16 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 26 26 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 27 27 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 28 28 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 29 29 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 30 30 H 1.07998 * 125.18757 * 359.97309 * 16 15 14 31 31 H 1.08006 * 122.55130 * 180.24751 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5672 -0.1320 3.9994 17 16 4.0854 -1.0575 5.4023 18 6 2.5993 -1.9977 5.3686 19 17 2.1924 -3.2668 6.4811 20 6 1.8302 -1.5828 4.3593 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7088 1.1611 -3.4845 25 1 1.8764 -2.6150 0.3648 26 1 1.9053 -2.5654 2.1441 27 1 0.4385 -2.0742 1.2640 28 1 1.9297 1.0872 2.3124 29 1 0.5722 -0.0344 2.5726 30 1 4.1340 0.6597 3.5321 31 1 0.8639 -2.0168 4.1487 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378999277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = 34.592513 kcal Electronic energy + Delta-G solvation = -15087.803127 eV Core-core repulsion = 12522.165427 eV Total energy + Delta-G solvation = -2565.637700 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.75497 -36.93509 -36.14343 -32.67087 -29.98159 -28.56330 -26.71438 -25.16157 -24.47620 -22.18081 -19.45387 -18.80734 -17.62225 -16.15361 -15.57799 -15.15509 -14.40188 -13.87458 -13.56880 -13.43376 -13.28086 -12.85855 -12.36329 -12.25598 -11.55284 -11.54198 -11.15526 -11.02699 -10.95857 -10.75405 -10.71583 -10.60618 -10.42432 -10.03055 -9.84485 -8.91549 -8.59096 -8.39684 -8.31776 -7.16570 -6.02122 -4.05727 0.92371 1.16974 1.89180 2.26548 2.71935 3.30947 3.37360 3.40935 4.41564 5.11278 5.19766 5.29845 5.38612 5.48973 5.78708 5.94187 6.06008 6.24361 6.37220 6.41695 6.61205 6.67048 6.81745 6.89790 7.09633 7.45848 7.70522 7.81936 8.09110 8.36153 8.57282 9.00174 9.59401 11.04981 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037451 B = 0.004548 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.454703 B = 6155.202482 C = 6208.954979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.529 5.529 13 C 0.033 3.967 14 C 0.108 3.892 15 C -0.078 4.078 16 C -0.183 4.183 17 S 0.119 5.881 18 C -0.154 4.154 19 Cl -0.026 7.026 20 C -0.102 4.102 21 H 0.088 0.912 22 H 0.031 0.969 23 H 0.008 0.992 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.018 0.982 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.172 0.828 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -3.428 15.412 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.252 5.252 13 C -0.116 4.116 14 C -0.022 4.022 15 C -0.090 4.090 16 C -0.319 4.319 17 S 0.381 5.619 18 C -0.297 4.297 19 Cl 0.003 6.997 20 C -0.135 4.135 21 H 0.107 0.893 22 H 0.050 0.950 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.190 0.810 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.151 -3.440 16.269 17.139 hybrid contribution -1.921 -0.578 -1.651 2.598 sum 2.230 -4.018 14.618 15.323 Atomic orbital electron populations 1.22414 1.00848 0.99421 1.00574 1.19337 0.89779 0.94571 0.85868 0.94235 1.21110 1.30542 1.12509 0.89615 0.91933 1.24922 0.95207 0.95144 0.98987 1.69885 1.37020 1.23108 1.23398 0.86524 0.78516 0.80009 0.82503 1.20688 1.19962 1.21381 1.62406 1.59426 1.01996 1.01380 1.22277 0.97035 0.91173 1.01097 1.20749 0.95905 0.97747 0.87847 1.18850 0.95261 0.96757 0.98106 1.25558 1.00015 1.06127 1.00236 1.84180 1.17601 1.30148 1.29976 1.25052 1.01605 1.01846 1.01224 1.98344 1.92912 1.48333 1.60140 1.20172 1.01440 0.97834 0.94033 0.89308 0.95026 0.97348 0.93014 0.90902 0.93770 0.96364 0.90365 0.94349 0.81024 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.28 37.16 0.31 -3.77 16 2 C 0.21 5.14 2.34 -68.87 -0.16 4.98 16 3 H 0.04 1.06 8.03 -51.92 -0.42 0.64 16 4 C -0.50 -13.41 7.94 -34.44 -0.27 -13.68 16 5 H 0.06 1.70 6.75 -52.49 -0.35 1.34 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.53 -11.01 4.73 -237.73 -1.13 -12.13 16 13 C 0.03 0.64 8.61 60.06 0.52 1.16 16 14 C 0.11 1.88 4.66 -4.98 -0.02 1.86 16 15 C -0.08 -1.18 4.75 -106.25 -0.50 -1.68 16 16 C -0.18 -2.49 10.97 29.02 0.32 -2.18 16 17 S 0.12 1.44 23.34 -107.50 -2.51 -1.07 16 18 C -0.15 -2.02 7.10 29.07 0.21 -1.82 16 19 Cl -0.03 -0.30 29.29 -51.86 -1.52 -1.82 16 20 C -0.10 -1.43 8.27 -41.15 -0.34 -1.77 16 21 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 22 H 0.03 0.72 6.38 -51.93 -0.33 0.39 16 23 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 25 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 26 H 0.04 0.77 6.00 -51.93 -0.31 0.46 16 27 H 0.02 0.35 6.28 -51.93 -0.33 0.02 16 28 H 0.08 1.34 7.98 -51.93 -0.41 0.92 16 29 H 0.04 0.66 6.92 -51.93 -0.36 0.31 16 30 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 279.89 15.07 4.22 4.22 Total: -1.00 -27.28 279.89 -8.88 -36.15 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -3.50 Total: -1.61 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.05 Total: -15.42 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.50 Total: -36.59 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.51 Total: -1.07 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.52 Total: -1.82 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.28 -8.88 -36.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378999277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.746 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds