Wall clock time and date at job start Mon Mar 30 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47549 * 2 1 4 4 N 1.46505 * 109.47199 * 120.00435 * 2 1 3 5 5 C 1.36940 * 119.99326 * 294.07121 * 4 2 1 6 6 H 1.08004 * 119.99621 * 204.97037 * 5 4 2 7 7 C 1.38807 * 120.00237 * 24.97756 * 5 4 2 8 8 N 1.31622 * 120.00109 * 315.25233 * 7 5 4 9 9 Si 1.86800 * 120.00005 * 135.25374 * 7 5 4 10 10 H 1.48495 * 109.47208 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47380 * 120.00057 * 9 7 5 12 12 H 1.48500 * 109.46994 * 239.99863 * 9 7 5 13 13 C 1.46497 * 120.00336 * 114.34705 * 4 2 1 14 14 C 1.50698 * 109.47030 * 265.68540 * 13 4 2 15 15 S 1.75879 * 125.20205 * 274.63237 * 14 13 4 16 16 C 1.75879 * 90.98385 * 179.97438 * 15 14 13 17 17 C 1.33411 * 109.60339 * 359.97438 * 16 15 14 18 18 C 1.33439 * 125.19724 * 94.32929 * 14 13 4 19 19 Cl 1.73601 * 122.55173 * 0.02562 * 18 14 13 20 20 H 1.09007 * 109.47395 * 261.70958 * 1 2 3 21 21 H 1.09005 * 109.47312 * 21.71076 * 1 2 3 22 22 H 1.09002 * 109.47696 * 141.71351 * 1 2 3 23 23 H 1.09004 * 109.47209 * 239.99941 * 2 1 3 24 24 H 1.09002 * 109.47226 * 212.68772 * 3 2 1 25 25 H 1.08996 * 109.46750 * 332.68376 * 3 2 1 26 26 H 1.08996 * 109.46988 * 92.68252 * 3 2 1 27 27 H 0.96994 * 120.00206 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47308 * 25.68922 * 13 4 2 29 29 H 1.09001 * 109.47300 * 145.68702 * 13 4 2 30 30 H 1.07998 * 125.19980 * 179.97438 * 16 15 14 31 31 H 1.08000 * 122.54125 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7904 -0.1563 2.4362 6 1 2.4483 -0.3986 3.2578 7 6 0.7139 0.6966 2.6373 8 7 0.4598 1.6518 1.7682 9 14 -0.3741 0.4887 4.1415 10 1 0.1202 -0.6500 4.9564 11 1 -0.3386 1.7314 4.9537 12 1 -1.7692 0.2192 3.7099 13 6 2.7556 -1.9498 1.0653 14 6 1.8015 -3.1077 1.2072 15 16 1.2990 -3.8263 2.7318 16 6 0.2818 -4.9847 1.8853 17 6 0.3691 -4.7798 0.5700 18 6 1.2044 -3.7408 0.1956 19 17 1.4588 -3.2982 -1.4636 20 1 -0.3634 -0.1482 1.0170 21 1 -0.3634 0.9548 -0.3802 22 1 -0.3634 -0.8066 -0.6367 23 1 1.8933 -0.5139 -0.8900 24 1 2.9766 1.4966 -0.5550 25 1 1.3003 2.0893 -0.4716 26 1 2.2065 1.7689 1.0265 27 1 -0.2922 2.2480 1.9089 28 1 3.2338 -1.9909 0.0866 29 1 3.5161 -2.0082 1.8439 30 1 -0.3214 -5.7457 2.3581 31 1 -0.1734 -5.3767 -0.1482 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379524041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:58 Heat of formation + Delta-G solvation = 79.569490 kcal Electronic energy + Delta-G solvation = -16017.586326 eV Core-core repulsion = 13453.898974 eV Total energy + Delta-G solvation = -2563.687352 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.88223 -36.61151 -35.41912 -32.32061 -30.83929 -28.82617 -25.56596 -25.51208 -23.49864 -21.93929 -19.82985 -18.78103 -16.76977 -16.21045 -15.39198 -15.10178 -13.86132 -13.51323 -13.18722 -12.93498 -12.70028 -12.54879 -12.23659 -12.03811 -11.39116 -11.14724 -11.02776 -10.85058 -10.59372 -10.49287 -10.35056 -10.25736 -9.97045 -9.79425 -9.54156 -9.06802 -8.12926 -7.88891 -7.80763 -6.91644 -6.01851 -3.14976 1.44292 1.94885 2.37020 3.02386 3.24299 3.35825 3.49986 3.55427 4.46832 4.99508 5.34333 5.43340 5.57913 5.95374 6.11755 6.33451 6.37038 6.45267 6.56641 6.78460 6.85288 6.88822 7.14030 7.25260 7.49507 7.53600 7.78805 7.91083 8.18963 8.39673 9.12405 9.71857 10.26024 10.85955 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.010991 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.702062 B = 2546.916831 C = 3402.938822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.195 3.805 3 C -0.117 4.117 4 N -0.576 5.576 5 C -0.290 4.290 6 H 0.079 0.921 7 C 0.048 3.952 8 N -0.823 5.823 9 Si 0.830 3.170 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.286 1.286 13 C 0.209 3.791 14 C -0.142 4.142 15 S 0.139 5.861 16 C -0.244 4.244 17 C -0.121 4.121 18 C -0.081 4.081 19 Cl -0.068 7.068 20 H 0.071 0.929 21 H 0.040 0.960 22 H 0.000 1.000 23 H 0.030 0.970 24 H -0.012 1.012 25 H 0.033 0.967 26 H 0.110 0.890 27 H 0.254 0.746 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.159 0.841 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -9.160 -2.520 9.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.090 3.910 3 C -0.175 4.175 4 N -0.295 5.295 5 C -0.417 4.417 6 H 0.097 0.903 7 C -0.155 4.155 8 N -0.461 5.461 9 Si 0.655 3.345 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.213 1.213 13 C 0.079 3.921 14 C -0.265 4.265 15 S 0.401 5.599 16 C -0.381 4.381 17 C -0.153 4.153 18 C -0.120 4.120 19 Cl -0.040 7.040 20 H 0.090 0.910 21 H 0.059 0.941 22 H 0.019 0.981 23 H 0.048 0.952 24 H 0.006 0.994 25 H 0.052 0.948 26 H 0.128 0.872 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.177 0.823 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.674 -8.624 -1.200 8.867 hybrid contribution -1.533 -0.405 -0.769 1.762 sum 0.142 -9.029 -1.969 9.242 Atomic orbital electron populations 1.22462 0.97859 0.97090 1.01398 1.20172 0.92851 0.92344 0.85667 1.22309 0.94896 0.96142 1.04122 1.44471 1.64974 1.16437 1.03616 1.18813 1.08397 1.27592 0.86882 0.90295 1.24965 0.97989 0.96446 0.96102 1.71006 1.26271 1.11749 1.37037 0.87365 0.83104 0.78542 0.85440 1.19668 1.22072 1.21258 1.19594 0.90777 0.81559 1.00185 1.26202 1.06203 1.00337 0.93791 1.84419 1.41318 1.25407 1.08726 1.25351 1.09508 1.05973 0.97238 1.19738 1.00810 0.98954 0.95774 1.19496 1.05406 1.01338 0.85748 1.98302 1.96043 1.92606 1.17038 0.91037 0.94080 0.98147 0.95191 0.99361 0.94785 0.87185 0.93471 0.91540 0.92484 0.82344 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.24 37.15 0.31 -2.76 16 2 C 0.19 4.49 3.28 -67.93 -0.22 4.27 16 3 C -0.12 -2.72 8.15 37.15 0.30 -2.42 16 4 N -0.58 -13.36 2.45 -167.03 -0.41 -13.77 16 5 C -0.29 -7.28 8.50 -15.06 -0.13 -7.41 16 6 H 0.08 2.01 8.06 -52.48 -0.42 1.58 16 7 C 0.05 1.24 3.23 -17.43 -0.06 1.18 16 8 N -0.82 -21.08 6.46 55.49 0.36 -20.72 16 9 Si 0.83 19.98 29.69 -169.99 -5.05 14.93 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C 0.21 4.18 5.93 -5.20 -0.03 4.15 16 14 C -0.14 -2.71 6.07 -35.99 -0.22 -2.93 16 15 S 0.14 2.44 23.33 -107.50 -2.51 -0.07 16 16 C -0.24 -3.76 11.23 29.05 0.33 -3.43 16 17 C -0.12 -1.96 10.07 -41.18 -0.41 -2.37 16 18 C -0.08 -1.46 6.27 -41.17 -0.26 -1.72 16 19 Cl -0.07 -1.16 27.75 -51.86 -1.44 -2.60 16 20 H 0.07 1.88 5.16 -51.92 -0.27 1.61 16 21 H 0.04 0.96 6.89 -51.93 -0.36 0.61 16 22 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 23 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 24 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16 25 H 0.03 0.78 7.11 -51.93 -0.37 0.41 16 26 H 0.11 2.87 5.06 -51.93 -0.26 2.61 16 27 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 28 H 0.07 1.27 7.01 -51.93 -0.36 0.90 16 29 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 30 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 277.42 15.07 4.18 4.18 Total: -1.00 -25.60 277.42 -8.93 -34.53 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -3.67 Total: -3.03 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.39 Total: -13.45 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.05 Total: -34.48 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.05 Total: 14.93 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.51 Total: -0.07 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.44 Total: -2.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -25.60 -8.93 -34.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379524041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.095 kcal (2) G-P(sol) polarization free energy of solvation -25.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds