Wall clock time and date at job start Mon Mar 30 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.71003 * 125.46073 * 2 1 4 4 C 1.75979 * 90.63435 * 179.97438 * 3 2 1 5 5 C 1.39875 * 125.29324 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00134 * 169.75530 * 5 4 3 7 7 C 1.40180 * 120.00251 * 349.74623 * 5 4 3 8 8 N 1.30733 * 119.99741 * 349.82650 * 7 5 4 9 9 Si 1.86796 * 120.00209 * 169.82672 * 7 5 4 10 10 H 1.48499 * 109.47159 * 94.98240 * 9 7 5 11 11 H 1.48497 * 109.47263 * 214.98144 * 9 7 5 12 12 H 1.48506 * 109.47022 * 334.98269 * 9 7 5 13 13 N 1.31587 * 109.41440 * 359.97438 * 4 3 2 14 14 C 1.31246 * 115.81391 * 359.97438 * 13 4 3 15 15 C 1.48215 * 122.47018 * 180.02562 * 14 13 4 16 16 C 1.39478 * 120.12927 * 222.87922 * 15 14 13 17 17 C 1.37961 * 119.86555 * 179.97438 * 16 15 14 18 18 C 1.38375 * 120.13073 * 0.02562 * 17 16 15 19 19 C 1.38333 * 120.26895 * 359.97404 * 18 17 16 20 20 C 1.50699 * 119.93539 * 180.02562 * 19 18 17 21 21 C 1.38007 * 120.13105 * 359.78686 * 19 18 17 22 22 H 1.08998 * 109.46735 * 354.70531 * 1 2 3 23 23 H 1.08996 * 109.46907 * 114.70703 * 1 2 3 24 24 H 1.09000 * 109.47051 * 234.70848 * 1 2 3 25 25 H 0.96996 * 119.99798 * 179.97438 * 8 7 5 26 26 H 1.08004 * 120.07340 * 359.97438 * 16 15 14 27 27 H 1.08000 * 119.93278 * 180.02562 * 17 16 15 28 28 H 1.08006 * 119.86729 * 180.02562 * 18 17 16 29 29 H 1.08997 * 109.47715 * 89.99784 * 20 19 18 30 30 H 1.09002 * 109.47035 * 209.99999 * 20 19 18 31 31 H 1.09005 * 109.47051 * 329.99262 * 20 19 18 32 32 H 1.07995 * 120.07054 * 180.25411 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3928 0.0000 4 6 3.9437 0.3878 0.0008 5 6 5.2591 0.8635 0.0006 6 1 6.0799 0.1817 0.1675 7 6 5.5121 2.2251 -0.2163 8 7 4.5481 3.0138 -0.6136 9 14 7.2264 2.9126 0.0624 10 1 7.9667 2.9332 -1.2248 11 1 7.1248 4.2942 0.5971 12 1 7.9506 2.0568 1.0363 13 7 3.5940 -0.8807 0.0015 14 6 2.3031 -1.1177 0.0021 15 6 1.7462 -2.4912 0.0035 16 6 0.6638 -2.8087 -0.8168 17 6 0.1501 -4.0891 -0.8115 18 6 0.7063 -5.0573 0.0058 19 6 1.7800 -4.7485 0.8215 20 6 2.3802 -5.8089 1.7082 21 6 2.3056 -3.4724 0.8213 22 1 -0.3633 1.0233 0.0948 23 1 -0.3633 -0.4295 -0.9336 24 1 -0.3633 -0.5937 0.8388 25 1 4.7231 3.9560 -0.7634 26 1 0.2285 -2.0538 -1.4548 27 1 -0.6878 -4.3362 -1.4466 28 1 0.3010 -6.0585 0.0062 29 1 3.1728 -6.3276 1.1690 30 1 2.7940 -5.3431 2.6026 31 1 1.6080 -6.5229 1.9946 32 1 3.1465 -3.2335 1.4555 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380497904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:29 Heat of formation + Delta-G solvation = 26.812292 kcal Electronic energy + Delta-G solvation = -16119.747349 eV Core-core repulsion = 13556.205122 eV Total energy + Delta-G solvation = -2563.542226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.05220 -37.22092 -34.26474 -32.59271 -31.17536 -30.19065 -27.94057 -26.46437 -24.51674 -22.46716 -21.77215 -20.63400 -18.26381 -17.26840 -16.06110 -15.69212 -15.04865 -14.71598 -14.36988 -13.59035 -13.44748 -13.17751 -12.79040 -12.60290 -12.18914 -11.98656 -11.91831 -11.88565 -11.57050 -11.50039 -11.28408 -10.89430 -10.58740 -10.53531 -10.38024 -9.65491 -9.33738 -8.42728 -8.23442 -7.82698 -7.70057 -7.17261 -6.94937 -4.69565 1.67591 1.87168 2.49381 2.92311 2.96706 3.02323 3.40635 3.67272 3.90676 3.95747 4.40711 5.07051 5.18422 5.26916 5.39359 5.53145 5.71411 5.79433 5.91652 6.03753 6.08350 6.21262 6.30072 6.37679 6.46722 6.57106 6.73310 6.80402 6.84299 6.95213 7.06541 7.32464 7.50986 7.55907 7.88749 8.29345 8.37332 9.68443 9.79518 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.029234 B = 0.005698 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.565885 B = 4913.053209 C = 5675.076749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.408 4.408 3 S 0.102 5.898 4 C 0.211 3.789 5 C -0.381 4.381 6 H 0.103 0.897 7 C 0.060 3.940 8 N -0.778 5.778 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.256 1.256 13 N -0.586 5.586 14 C 0.131 3.869 15 C 0.020 3.980 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.137 4.137 19 C -0.095 4.095 20 C -0.109 4.109 21 C -0.097 4.097 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.297 0.703 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.963 -6.098 1.511 7.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.534 4.534 3 S 0.363 5.637 4 C -0.043 4.043 5 C -0.424 4.424 6 H 0.121 0.879 7 C -0.162 4.162 8 N -0.406 5.406 9 Si 0.760 3.240 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.179 1.179 13 N -0.307 5.307 14 C -0.009 4.009 15 C 0.018 3.982 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.155 4.155 19 C -0.096 4.096 20 C -0.166 4.166 21 C -0.116 4.116 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.810 -5.105 1.456 6.534 hybrid contribution 0.266 -0.448 -0.044 0.523 sum -3.544 -5.553 1.412 6.737 Atomic orbital electron populations 1.19732 0.90250 0.99891 0.99730 1.25167 1.00087 0.99200 1.28936 1.83933 0.98644 1.07939 1.73179 1.23726 0.96634 0.88438 0.95463 1.18932 0.91359 0.93189 1.38961 0.87890 1.26170 1.01060 0.96746 0.92271 1.69063 1.34261 1.07390 1.29870 0.85785 0.79703 0.78604 0.79917 1.19021 1.19605 1.17920 1.67402 1.13818 1.17658 1.31792 1.18628 0.88970 0.91078 1.02181 1.18436 0.93667 0.91568 0.94562 1.21269 0.96752 0.96374 0.99204 1.20929 1.00147 0.93330 0.99631 1.20889 0.97540 0.98848 0.98245 1.19792 0.96630 0.94849 0.98284 1.20733 1.00400 0.96942 0.98495 1.21142 0.99371 0.91733 0.99348 0.93615 0.93525 0.93619 0.89079 0.85982 0.86612 0.86904 0.91546 0.91763 0.92069 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.73 8.98 36.01 0.32 -0.41 16 2 C -0.41 -9.86 6.37 -34.68 -0.22 -10.08 16 3 S 0.10 2.59 20.34 -107.50 -2.19 0.40 16 4 C 0.21 5.80 7.05 -17.04 -0.12 5.68 16 5 C -0.38 -9.92 9.43 -38.24 -0.36 -10.28 16 6 H 0.10 2.59 7.87 -52.49 -0.41 2.18 16 7 C 0.06 1.42 5.45 -17.29 -0.09 1.32 16 8 N -0.78 -18.69 10.91 55.56 0.61 -18.09 16 9 Si 0.94 17.41 29.57 -169.99 -5.03 12.38 16 10 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 11 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 12 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 13 N -0.59 -16.08 10.60 -9.50 -0.10 -16.18 16 14 C 0.13 3.29 6.29 -84.39 -0.53 2.76 16 15 C 0.02 0.44 5.59 -104.89 -0.59 -0.15 16 16 C -0.12 -2.18 8.71 -39.22 -0.34 -2.52 16 17 C -0.12 -1.91 10.03 -39.63 -0.40 -2.30 16 18 C -0.14 -2.05 9.69 -39.50 -0.38 -2.43 16 19 C -0.10 -1.55 5.87 -104.67 -0.61 -2.16 16 20 C -0.11 -1.37 10.01 36.01 0.36 -1.01 16 21 C -0.10 -1.91 9.37 -39.22 -0.37 -2.28 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.84 6.27 -51.93 -0.33 0.52 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.30 6.36 8.29 -40.82 -0.34 6.02 16 26 H 0.12 2.21 5.97 -52.48 -0.31 1.89 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -28.55 288.76 -9.25 -37.80 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.56 Total: 3.18 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -3.33 Total: -23.86 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.51 Total: -34.26 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.19 Total: 0.40 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.55 -9.25 -37.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380497904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.617 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds