Wall clock time and date at job start Mon Mar 30 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.71003 * 125.46073 * 2 1 4 4 C 1.75979 * 90.63435 * 179.97438 * 3 2 1 5 5 C 1.39875 * 125.29324 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00134 * 169.75530 * 5 4 3 7 7 C 1.40180 * 120.00251 * 349.74623 * 5 4 3 8 8 N 1.30733 * 119.99741 * 349.82650 * 7 5 4 9 9 Si 1.86796 * 120.00209 * 169.82672 * 7 5 4 10 10 H 1.48499 * 109.47159 * 94.98240 * 9 7 5 11 11 H 1.48497 * 109.47263 * 214.98144 * 9 7 5 12 12 H 1.48506 * 109.47022 * 334.98269 * 9 7 5 13 13 N 1.31587 * 109.41440 * 359.97438 * 4 3 2 14 14 C 1.31246 * 115.81391 * 359.97438 * 13 4 3 15 15 C 1.48215 * 122.47018 * 180.02562 * 14 13 4 16 16 C 1.39478 * 120.12927 * 222.87922 * 15 14 13 17 17 C 1.37961 * 119.86555 * 179.97438 * 16 15 14 18 18 C 1.38375 * 120.13073 * 0.02562 * 17 16 15 19 19 C 1.38333 * 120.26895 * 359.97404 * 18 17 16 20 20 C 1.50699 * 119.93539 * 180.02562 * 19 18 17 21 21 C 1.38007 * 120.13105 * 359.78686 * 19 18 17 22 22 H 1.08998 * 109.46735 * 354.70531 * 1 2 3 23 23 H 1.08996 * 109.46907 * 114.70703 * 1 2 3 24 24 H 1.09000 * 109.47051 * 234.70848 * 1 2 3 25 25 H 0.96996 * 119.99798 * 179.97438 * 8 7 5 26 26 H 1.08004 * 120.07340 * 359.97438 * 16 15 14 27 27 H 1.08000 * 119.93278 * 180.02562 * 17 16 15 28 28 H 1.08006 * 119.86729 * 180.02562 * 18 17 16 29 29 H 1.08997 * 109.47715 * 89.99784 * 20 19 18 30 30 H 1.09002 * 109.47035 * 209.99999 * 20 19 18 31 31 H 1.09005 * 109.47051 * 329.99262 * 20 19 18 32 32 H 1.07995 * 120.07054 * 180.25411 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3928 0.0000 4 6 3.9437 0.3878 0.0008 5 6 5.2591 0.8635 0.0006 6 1 6.0799 0.1817 0.1675 7 6 5.5121 2.2251 -0.2163 8 7 4.5481 3.0138 -0.6136 9 14 7.2264 2.9126 0.0624 10 1 7.9667 2.9332 -1.2248 11 1 7.1248 4.2942 0.5971 12 1 7.9506 2.0568 1.0363 13 7 3.5940 -0.8807 0.0015 14 6 2.3031 -1.1177 0.0021 15 6 1.7462 -2.4912 0.0035 16 6 0.6638 -2.8087 -0.8168 17 6 0.1501 -4.0891 -0.8115 18 6 0.7063 -5.0573 0.0058 19 6 1.7800 -4.7485 0.8215 20 6 2.3802 -5.8089 1.7082 21 6 2.3056 -3.4724 0.8213 22 1 -0.3633 1.0233 0.0948 23 1 -0.3633 -0.4295 -0.9336 24 1 -0.3633 -0.5937 0.8388 25 1 4.7231 3.9560 -0.7634 26 1 0.2285 -2.0538 -1.4548 27 1 -0.6878 -4.3362 -1.4466 28 1 0.3010 -6.0585 0.0062 29 1 3.1728 -6.3276 1.1690 30 1 2.7940 -5.3431 2.6026 31 1 1.6080 -6.5229 1.9946 32 1 3.1465 -3.2335 1.4555 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380497904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:29 Heat of formation + Delta-G solvation = 11.486213 kcal Electronic energy + Delta-G solvation = -16120.411937 eV Core-core repulsion = 13556.205122 eV Total energy + Delta-G solvation = -2564.206815 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54697 -38.94493 -36.10200 -34.02317 -32.69764 -31.68481 -29.79720 -27.64465 -26.24825 -24.21325 -23.27641 -22.10000 -19.95682 -19.19064 -17.75493 -17.20179 -16.76421 -16.11444 -15.84814 -15.12262 -14.91920 -14.49729 -14.27476 -14.07460 -13.97675 -13.65943 -13.44997 -13.20315 -13.02832 -12.91041 -12.75835 -12.39015 -12.21901 -12.02086 -11.87144 -11.36162 -11.12491 -9.94039 -9.81378 -9.65405 -9.56446 -8.97476 -8.78986 -6.65208 0.18093 0.52625 0.74288 1.37364 1.42976 1.50349 1.56944 1.93507 2.15728 2.24913 2.90512 3.19050 3.85826 4.00371 4.09584 4.26384 4.49762 4.56396 4.60008 4.61846 4.83356 4.84002 4.85837 4.95022 4.99184 5.03295 5.15515 5.31785 5.33995 5.52601 5.67502 5.76096 5.82209 5.94594 6.17891 6.38686 6.43949 7.75711 8.01196 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.029234 B = 0.005698 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.565885 B = 4913.053209 C = 5675.076749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.420 4.420 3 S 0.082 5.918 4 C 0.177 3.823 5 C -0.411 4.411 6 H 0.099 0.901 7 C 0.026 3.974 8 N -0.798 5.798 9 Si 1.015 2.985 10 H -0.256 1.256 11 H -0.255 1.255 12 H -0.256 1.256 13 N -0.621 5.621 14 C 0.114 3.886 15 C -0.018 4.018 16 C -0.127 4.127 17 C -0.112 4.112 18 C -0.125 4.125 19 C -0.094 4.094 20 C -0.108 4.108 21 C -0.121 4.121 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.310 0.690 26 H 0.121 0.879 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 -7.517 1.307 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.546 4.546 3 S 0.342 5.658 4 C -0.076 4.076 5 C -0.454 4.454 6 H 0.117 0.883 7 C -0.195 4.195 8 N -0.426 5.426 9 Si 0.832 3.168 10 H -0.180 1.180 11 H -0.179 1.179 12 H -0.179 1.179 13 N -0.343 5.343 14 C -0.024 4.024 15 C -0.021 4.021 16 C -0.146 4.146 17 C -0.130 4.130 18 C -0.143 4.143 19 C -0.094 4.094 20 C -0.164 4.164 21 C -0.140 4.140 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.655 -6.540 1.246 8.123 hybrid contribution 0.464 -0.098 -0.001 0.474 sum -4.191 -6.638 1.245 7.948 Atomic orbital electron populations 1.19758 0.87299 1.00808 1.00963 1.25622 1.02080 0.98137 1.28715 1.83656 0.98764 1.09042 1.74342 1.24194 0.97908 0.89071 0.96401 1.19269 0.90934 0.94865 1.40314 0.88346 1.27179 1.05544 0.95810 0.90943 1.69093 1.36345 1.08292 1.28848 0.84681 0.73845 0.78188 0.80072 1.17980 1.17895 1.17931 1.67437 1.15570 1.17945 1.33376 1.19234 0.88441 0.93395 1.01357 1.18531 0.95815 0.90418 0.97313 1.21345 0.96199 0.98093 0.98974 1.21368 1.00436 0.91784 0.99378 1.21412 0.96043 1.00580 0.96241 1.20187 0.96659 0.93958 0.98560 1.20805 1.01490 0.96374 0.97738 1.21100 0.99584 0.93464 0.99875 0.92684 0.91764 0.92765 0.87707 0.86093 0.82674 0.82531 0.90481 0.92154 0.89033 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.16 8.98 71.24 0.64 -0.52 16 2 C -0.42 -21.03 6.37 25.45 0.16 -20.87 16 3 S 0.08 4.34 20.34 -56.49 -1.15 3.19 16 4 C 0.18 10.28 7.05 85.13 0.60 10.88 16 5 C -0.41 -22.35 9.43 23.14 0.22 -22.13 16 6 H 0.10 5.23 7.87 -2.91 -0.02 5.21 16 7 C 0.03 1.23 5.45 85.33 0.47 1.70 16 8 N -0.80 -38.92 10.91 21.87 0.24 -38.68 16 9 Si 1.01 35.37 29.57 68.60 2.03 37.40 16 10 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 11 H -0.26 -8.20 7.11 99.48 0.71 -7.49 16 12 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 13 N -0.62 -36.23 10.60 -183.96 -1.95 -38.18 16 14 C 0.11 5.99 6.29 41.65 0.26 6.25 16 15 C -0.02 -0.81 5.59 -20.04 -0.11 -0.92 16 16 C -0.13 -4.62 8.71 22.50 0.20 -4.42 16 17 C -0.11 -3.10 10.03 22.24 0.22 -2.88 16 18 C -0.12 -3.23 9.69 22.32 0.22 -3.01 16 19 C -0.09 -2.86 5.87 -19.90 -0.12 -2.98 16 20 C -0.11 -2.43 10.01 71.24 0.71 -1.71 16 21 C -0.12 -4.90 9.37 22.51 0.21 -4.69 16 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.06 2.28 6.27 -2.39 -0.01 2.26 16 24 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.31 13.22 8.29 -92.71 -0.77 12.45 16 26 H 0.12 4.30 5.97 -2.91 -0.02 4.28 16 27 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 31 H 0.09 1.52 8.08 -2.38 -0.02 1.50 16 32 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -66.31 288.76 3.98 -62.33 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.13 Total: 19.25 kcal Atomic # 6 Polarization: -48.99 SS G_CDS: 3.68 Total: -45.31 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -1.71 Total: -76.86 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.15 Total: 3.19 kcal Total: -66.31 3.98 -62.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380497904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.818 kcal (2) G-P(sol) polarization free energy of solvation -66.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds