Wall clock time and date at job start Mon Mar 30 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37974 * 120.07157 * 2 1 4 4 C 1.38352 * 120.13616 * 180.27433 * 3 2 1 5 5 C 1.38358 * 120.26646 * 359.72702 * 4 3 2 6 6 C 1.37983 * 120.13032 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.06672 * 179.97438 * 6 5 4 8 8 C 1.39459 * 119.86704 * 359.97438 * 6 5 4 9 9 C 1.48215 * 120.13627 * 180.02562 * 8 6 5 10 10 C 1.37214 * 122.47512 * 129.37749 * 9 8 6 11 11 S 1.71002 * 109.08095 * 179.97438 * 10 9 8 12 12 C 1.75981 * 90.63309 * 0.02562 * 11 10 9 13 13 C 1.39877 * 125.29530 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00090 * 172.33493 * 13 12 11 15 15 C 1.40175 * 120.00081 * 352.32770 * 13 12 11 16 16 N 1.30728 * 119.99825 * 7.51238 * 15 13 12 17 17 Si 1.86798 * 120.00042 * 187.50731 * 15 13 12 18 18 H 1.48492 * 109.47123 * 94.95097 * 17 15 13 19 19 H 1.48503 * 109.47011 * 214.94912 * 17 15 13 20 20 H 1.48497 * 109.47353 * 334.94871 * 17 15 13 21 21 N 1.31247 * 122.46631 * 309.35533 * 9 8 6 22 22 H 1.09004 * 109.46902 * 264.83731 * 1 2 3 23 23 H 1.08998 * 109.46687 * 24.83643 * 1 2 3 24 24 H 1.08999 * 109.47343 * 144.83748 * 1 2 3 25 25 H 1.08006 * 119.93120 * 0.02562 * 3 2 1 26 26 H 1.08005 * 119.86978 * 179.69398 * 4 3 2 27 27 H 1.07999 * 119.93580 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.47251 * 264.58851 * 7 6 5 29 29 H 1.09003 * 109.47051 * 24.58401 * 7 6 5 30 30 H 1.08997 * 109.47024 * 144.59027 * 7 6 5 31 31 H 1.08002 * 125.46082 * 359.95848 * 10 9 8 32 32 H 0.97002 * 120.00189 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1956 -0.0057 5 6 4.2806 0.0014 -0.0058 6 6 3.6004 -1.1991 -0.0007 7 6 4.3628 -2.4989 -0.0013 8 6 2.2058 -1.2071 0.0051 9 6 1.4691 -2.4931 0.0112 10 6 0.4693 -2.7652 0.9108 11 16 -0.1413 -4.3340 0.6104 12 6 0.9916 -4.5414 -0.7202 13 6 1.0958 -5.6823 -1.5227 14 1 1.7344 -5.6735 -2.3936 15 6 0.3715 -6.8372 -1.1963 16 7 -0.5108 -6.8048 -0.2322 17 14 0.6670 -8.4226 -2.1390 18 1 1.6501 -9.2591 -1.4050 19 1 -0.6123 -9.1647 -2.2727 20 1 1.1980 -8.1043 -3.4888 21 7 1.7246 -3.4555 -0.8438 22 1 -0.3633 -0.0925 1.0235 23 1 -0.3632 0.9326 -0.4317 24 1 -0.3634 -0.8401 -0.5918 25 1 1.6584 2.1294 0.0004 26 1 4.1187 2.1328 -0.0107 27 1 5.3606 0.0089 -0.0107 28 1 4.4588 -2.8633 -1.0242 29 1 5.3545 -2.3387 0.4218 30 1 3.8267 -3.2349 0.5977 31 1 0.1236 -2.0960 1.6847 32 1 -1.0117 -7.6041 -0.0061 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380497957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:32 Heat of formation + Delta-G solvation = 27.886386 kcal Electronic energy + Delta-G solvation = -16434.896159 eV Core-core repulsion = 13871.400509 eV Total energy + Delta-G solvation = -2563.495650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.27652 -37.04252 -34.15071 -33.06877 -31.65493 -28.88423 -26.89978 -26.51097 -25.76342 -23.01706 -21.10939 -20.08478 -18.35416 -17.71194 -15.91315 -15.35377 -15.20876 -14.82930 -14.20485 -13.58834 -13.42086 -12.66963 -12.60295 -12.48531 -12.45809 -12.19037 -12.02190 -11.77954 -11.45495 -11.20263 -11.10256 -10.75303 -10.60038 -10.48556 -10.36489 -9.65691 -9.48181 -8.26320 -8.08037 -7.84755 -7.75632 -7.09922 -7.00097 -4.74403 1.73872 1.86697 2.53145 2.92136 2.98857 3.01901 3.50074 3.67826 3.98382 4.00716 4.36242 5.09451 5.27868 5.34604 5.39592 5.50546 5.74004 5.88596 6.06075 6.10571 6.14170 6.32295 6.36758 6.48474 6.61997 6.71792 6.81071 6.86951 6.89370 6.97015 7.10628 7.34488 7.49197 7.59394 7.88843 8.30550 8.39539 9.71161 9.80417 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032739 B = 0.006033 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.035384 B = 4640.153134 C = 5192.065244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.073 4.073 3 C -0.134 4.134 4 C -0.128 4.128 5 C -0.135 4.135 6 C -0.060 4.060 7 C -0.099 4.099 8 C 0.008 3.992 9 C 0.139 3.861 10 C -0.446 4.446 11 S 0.110 5.890 12 C 0.203 3.797 13 C -0.376 4.376 14 H 0.103 0.897 15 C 0.056 3.944 16 N -0.780 5.780 17 Si 0.940 3.060 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.257 1.257 21 N -0.583 5.583 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 5.533 0.798 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 C -0.152 4.152 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.061 4.061 7 C -0.156 4.156 8 C 0.005 3.995 9 C 0.000 4.000 10 C -0.590 4.590 11 S 0.370 5.630 12 C -0.050 4.050 13 C -0.419 4.419 14 H 0.120 0.880 15 C -0.166 4.166 16 N -0.409 5.409 17 Si 0.763 3.237 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.180 1.180 21 N -0.304 5.304 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.016 4.759 0.997 5.263 hybrid contribution 0.510 0.322 -0.152 0.622 sum 2.526 5.081 0.845 5.737 Atomic orbital electron populations 1.20777 0.91326 1.01990 1.02202 1.19931 0.96052 0.92069 0.99331 1.20798 0.94137 0.96861 1.03439 1.20975 0.94159 0.97442 1.02025 1.20862 0.99157 0.92003 1.03258 1.20019 0.93019 0.95324 0.97773 1.20651 0.97500 0.94349 1.03092 1.18300 0.91727 0.91166 0.98299 1.18578 0.94877 0.92826 0.93757 1.26359 1.12664 1.07379 1.12605 1.84214 1.39405 1.05378 1.33971 1.23851 0.91796 0.94464 0.94924 1.18961 1.21211 0.92793 1.08905 0.87953 1.26152 0.93243 1.02076 0.95155 1.68841 1.16635 1.31730 1.23731 0.85726 0.78891 0.78730 0.80315 1.19023 1.19762 1.18032 1.67419 1.31525 1.01870 1.29576 0.91573 0.92755 0.90754 0.86713 0.86836 0.86684 0.90617 0.93300 0.91257 0.85229 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.55 36.01 0.31 -1.53 16 2 C -0.07 -1.38 5.89 -104.26 -0.61 -1.99 16 3 C -0.13 -2.16 9.67 -39.64 -0.38 -2.55 16 4 C -0.13 -1.94 10.04 -39.50 -0.40 -2.34 16 5 C -0.13 -2.23 9.67 -39.63 -0.38 -2.61 16 6 C -0.06 -1.19 5.91 -104.26 -0.62 -1.80 16 7 C -0.10 -1.89 8.91 36.00 0.32 -1.57 16 8 C 0.01 0.17 5.70 -104.88 -0.60 -0.43 16 9 C 0.14 3.41 4.46 -84.39 -0.38 3.04 16 10 C -0.45 -10.73 9.23 30.36 0.28 -10.45 16 11 S 0.11 2.76 20.17 -107.50 -2.17 0.59 16 12 C 0.20 5.45 7.10 -17.04 -0.12 5.33 16 13 C -0.38 -9.59 9.43 -38.24 -0.36 -9.95 16 14 H 0.10 2.54 7.86 -52.49 -0.41 2.12 16 15 C 0.06 1.30 5.49 -17.29 -0.09 1.20 16 16 N -0.78 -18.47 10.69 55.56 0.59 -17.87 16 17 Si 0.94 17.30 29.57 -169.99 -5.03 12.27 16 18 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 21 N -0.58 -15.42 9.54 -9.50 -0.09 -15.51 16 22 H 0.07 1.09 7.47 -51.93 -0.39 0.70 16 23 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 24 H 0.07 1.47 6.88 -51.93 -0.36 1.12 16 25 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 26 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.05 0.76 8.05 -51.93 -0.42 0.35 16 30 H 0.07 1.49 7.08 -51.93 -0.37 1.13 16 31 H 0.13 2.91 7.21 -52.49 -0.38 2.53 16 32 H 0.30 6.29 8.29 -40.82 -0.34 5.96 16 LS Contribution 284.55 15.07 4.29 4.29 Total: -1.00 -27.52 284.55 -9.00 -36.53 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.57 Total: 5.36 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.04 Total: -25.66 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.50 Total: -33.38 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.17 Total: 0.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.52 -9.00 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380497957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.413 kcal (2) G-P(sol) polarization free energy of solvation -27.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds