Wall clock time and date at job start Mon Mar 30 2020 07:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37974 * 120.07157 * 2 1 4 4 C 1.38352 * 120.13616 * 180.27433 * 3 2 1 5 5 C 1.38358 * 120.26646 * 359.72702 * 4 3 2 6 6 C 1.37983 * 120.13032 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.06672 * 179.97438 * 6 5 4 8 8 C 1.39459 * 119.86704 * 359.97438 * 6 5 4 9 9 C 1.48215 * 120.13627 * 180.02562 * 8 6 5 10 10 C 1.37214 * 122.47512 * 129.37749 * 9 8 6 11 11 S 1.71002 * 109.08095 * 179.97438 * 10 9 8 12 12 C 1.75981 * 90.63309 * 0.02562 * 11 10 9 13 13 C 1.39877 * 125.29530 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00090 * 172.33493 * 13 12 11 15 15 C 1.40175 * 120.00081 * 352.32770 * 13 12 11 16 16 N 1.30728 * 119.99825 * 7.51238 * 15 13 12 17 17 Si 1.86798 * 120.00042 * 187.50731 * 15 13 12 18 18 H 1.48492 * 109.47123 * 94.95097 * 17 15 13 19 19 H 1.48503 * 109.47011 * 214.94912 * 17 15 13 20 20 H 1.48497 * 109.47353 * 334.94871 * 17 15 13 21 21 N 1.31247 * 122.46631 * 309.35533 * 9 8 6 22 22 H 1.09004 * 109.46902 * 264.83731 * 1 2 3 23 23 H 1.08998 * 109.46687 * 24.83643 * 1 2 3 24 24 H 1.08999 * 109.47343 * 144.83748 * 1 2 3 25 25 H 1.08006 * 119.93120 * 0.02562 * 3 2 1 26 26 H 1.08005 * 119.86978 * 179.69398 * 4 3 2 27 27 H 1.07999 * 119.93580 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.47251 * 264.58851 * 7 6 5 29 29 H 1.09003 * 109.47051 * 24.58401 * 7 6 5 30 30 H 1.08997 * 109.47024 * 144.59027 * 7 6 5 31 31 H 1.08002 * 125.46082 * 359.95848 * 10 9 8 32 32 H 0.97002 * 120.00189 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1956 -0.0057 5 6 4.2806 0.0014 -0.0058 6 6 3.6004 -1.1991 -0.0007 7 6 4.3628 -2.4989 -0.0013 8 6 2.2058 -1.2071 0.0051 9 6 1.4691 -2.4931 0.0112 10 6 0.4693 -2.7652 0.9108 11 16 -0.1413 -4.3340 0.6104 12 6 0.9916 -4.5414 -0.7202 13 6 1.0958 -5.6823 -1.5227 14 1 1.7344 -5.6735 -2.3936 15 6 0.3715 -6.8372 -1.1963 16 7 -0.5108 -6.8048 -0.2322 17 14 0.6670 -8.4226 -2.1390 18 1 1.6501 -9.2591 -1.4050 19 1 -0.6123 -9.1647 -2.2727 20 1 1.1980 -8.1043 -3.4888 21 7 1.7246 -3.4555 -0.8438 22 1 -0.3633 -0.0925 1.0235 23 1 -0.3632 0.9326 -0.4317 24 1 -0.3634 -0.8401 -0.5918 25 1 1.6584 2.1294 0.0004 26 1 4.1187 2.1328 -0.0107 27 1 5.3606 0.0089 -0.0107 28 1 4.4588 -2.8633 -1.0242 29 1 5.3545 -2.3387 0.4218 30 1 3.8267 -3.2349 0.5977 31 1 0.1236 -2.0960 1.6847 32 1 -1.0117 -7.6041 -0.0061 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380497957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:31 Heat of formation + Delta-G solvation = 13.574094 kcal Electronic energy + Delta-G solvation = -16435.516787 eV Core-core repulsion = 13871.400509 eV Total energy + Delta-G solvation = -2564.116278 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76592 -38.79389 -35.98849 -34.46833 -33.13888 -30.65511 -28.49639 -28.14132 -27.28984 -24.72477 -22.70384 -21.46744 -20.02815 -19.66489 -17.64604 -16.95573 -16.74965 -16.34337 -15.68329 -15.13381 -14.93043 -14.29095 -14.22979 -14.15126 -13.91371 -13.76479 -13.53131 -13.44002 -12.97517 -12.69191 -12.53520 -12.35281 -12.12133 -12.00975 -11.84749 -11.35591 -11.27533 -9.92663 -9.76310 -9.65581 -9.42211 -8.88782 -8.83743 -6.69146 0.26184 0.51873 0.76672 1.39037 1.48651 1.56014 1.57664 2.03093 2.19512 2.28743 2.88012 3.21672 3.88632 4.00831 4.02900 4.17567 4.45311 4.54685 4.63180 4.72310 4.78834 4.82950 4.87699 4.96702 4.97490 5.02425 5.20550 5.31403 5.45716 5.52215 5.60842 5.78485 5.87443 5.96412 6.20162 6.41188 6.48003 7.80383 8.02427 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032739 B = 0.006033 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.035384 B = 4640.153134 C = 5192.065244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.113 4.113 5 C -0.132 4.132 6 C -0.084 4.084 7 C -0.090 4.090 8 C -0.039 4.039 9 C 0.141 3.859 10 C -0.460 4.460 11 S 0.091 5.909 12 C 0.173 3.827 13 C -0.402 4.402 14 H 0.100 0.900 15 C 0.022 3.978 16 N -0.799 5.799 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.257 1.257 20 H -0.255 1.255 21 N -0.609 5.609 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.037 0.963 25 H 0.151 0.849 26 H 0.159 0.841 27 H 0.147 0.853 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.031 0.969 31 H 0.139 0.861 32 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 6.881 0.456 7.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.131 4.131 5 C -0.150 4.150 6 C -0.085 4.085 7 C -0.147 4.147 8 C -0.042 4.042 9 C 0.002 3.998 10 C -0.604 4.604 11 S 0.351 5.649 12 C -0.080 4.080 13 C -0.444 4.444 14 H 0.118 0.882 15 C -0.199 4.199 16 N -0.427 5.427 17 Si 0.835 3.165 18 H -0.183 1.183 19 H -0.181 1.181 20 H -0.178 1.178 21 N -0.332 5.332 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.056 0.944 25 H 0.169 0.831 26 H 0.176 0.824 27 H 0.165 0.835 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.157 0.843 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.066 6.138 0.681 6.895 hybrid contribution 0.207 -0.007 -0.040 0.210 sum 3.273 6.132 0.641 6.980 Atomic orbital electron populations 1.20719 0.90917 1.02090 1.01982 1.20187 0.96687 0.92332 0.99705 1.21221 0.94935 0.96924 1.01641 1.21515 0.93982 0.98684 0.98935 1.21225 1.00815 0.91114 1.01797 1.20203 0.92533 0.96665 0.99084 1.20529 0.98836 0.93693 1.01593 1.18498 0.92916 0.90743 1.02033 1.19048 0.94567 0.93618 0.92589 1.26399 1.13523 1.07040 1.13398 1.83952 1.39975 1.06687 1.34332 1.24310 0.92506 0.95287 0.95883 1.19302 1.22230 0.93770 1.09134 0.88226 1.27168 0.92119 1.04773 0.95791 1.68871 1.16460 1.33369 1.24025 0.84634 0.79424 0.73827 0.78647 1.18264 1.18068 1.17840 1.67472 1.32300 1.02551 1.30828 0.91284 0.89500 0.94351 0.83129 0.82365 0.83527 0.92232 0.89846 0.94965 0.84272 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.46 8.55 71.24 0.61 -2.85 16 2 C -0.09 -3.25 5.89 -19.63 -0.12 -3.37 16 3 C -0.13 -3.70 9.67 22.23 0.21 -3.48 16 4 C -0.11 -2.92 10.04 22.33 0.22 -2.70 16 5 C -0.13 -3.94 9.67 22.24 0.22 -3.72 16 6 C -0.08 -3.28 5.91 -19.63 -0.12 -3.39 16 7 C -0.09 -3.50 8.91 71.23 0.63 -2.87 16 8 C -0.04 -1.74 5.70 -20.03 -0.11 -1.85 16 9 C 0.14 7.25 4.46 41.64 0.19 7.44 16 10 C -0.46 -23.35 9.23 67.58 0.62 -22.72 16 11 S 0.09 4.83 20.17 -56.49 -1.14 3.69 16 12 C 0.17 9.76 7.10 85.13 0.60 10.36 16 13 C -0.40 -21.31 9.43 23.14 0.22 -21.09 16 14 H 0.10 5.16 7.86 -2.91 -0.02 5.14 16 15 C 0.02 1.02 5.49 85.33 0.47 1.48 16 16 N -0.80 -38.32 10.69 21.87 0.23 -38.09 16 17 Si 1.02 34.90 29.57 68.60 2.03 36.92 16 18 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 19 H -0.26 -8.13 7.11 99.48 0.71 -7.43 16 20 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 21 N -0.61 -34.15 9.54 -183.96 -1.76 -35.90 16 22 H 0.07 2.28 7.47 -2.39 -0.02 2.26 16 23 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16 24 H 0.04 1.57 6.88 -2.39 -0.02 1.56 16 25 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 26 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 28 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.08 2.55 8.05 -2.39 -0.02 2.53 16 30 H 0.03 1.45 7.08 -2.39 -0.02 1.44 16 31 H 0.14 6.56 7.21 -2.91 -0.02 6.54 16 32 H 0.31 13.07 8.29 -92.71 -0.77 12.30 16 Total: -1.00 -63.73 284.55 4.15 -59.59 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.13 Total: 22.56 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 3.65 Total: -48.77 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.52 Total: -73.99 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.14 Total: 3.69 kcal Total: -63.73 4.15 -59.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380497957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.160 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds