Wall clock time and date at job start Mon Mar 30 2020 07:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99533 * 2 1 4 4 H 1.48498 * 109.47501 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47317 * 119.99935 * 3 2 1 6 6 H 1.48509 * 109.46840 * 239.99792 * 3 2 1 7 7 C 1.37876 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99952 * 173.41869 * 7 2 1 9 9 C 1.50692 * 119.99825 * 353.41871 * 7 2 1 10 10 H 1.08999 * 109.47355 * 324.49605 * 9 7 2 11 11 N 1.46899 * 109.46990 * 84.49782 * 9 7 2 12 12 C 1.50697 * 109.47243 * 204.49507 * 9 7 2 13 13 C 1.33051 * 125.03382 * 99.72098 * 12 9 7 14 14 C 1.39376 * 114.91722 * 179.79783 * 13 12 9 15 15 C 1.48364 * 122.77597 * 180.22791 * 14 13 12 16 16 C 1.39363 * 120.12018 * 0.04075 * 15 14 13 17 17 C 1.38013 * 119.87686 * 179.73624 * 16 15 14 18 18 C 1.38323 * 120.11893 * 0.53614 * 17 16 15 19 19 C 1.38327 * 120.25265 * 359.71672 * 18 17 16 20 20 C 1.38015 * 120.11730 * 0.02562 * 19 18 17 21 21 C 1.34578 * 114.45535 * 0.49495 * 14 13 12 22 22 S 1.75812 * 125.03587 * 280.02981 * 12 9 7 23 23 H 0.97003 * 119.99651 * 180.72128 * 1 2 3 24 24 H 1.00902 * 111.00548 * 300.41280 * 11 9 7 25 25 H 1.00898 * 111.00445 * 64.37201 * 11 9 7 26 26 H 1.07997 * 122.54279 * 0.02562 * 13 12 9 27 27 H 1.08002 * 120.05685 * 359.97015 * 16 15 14 28 28 H 1.07993 * 119.94143 * 180.24963 * 17 16 15 29 29 H 1.08000 * 119.87753 * 179.74274 * 18 17 16 30 30 H 1.07996 * 119.94207 * 179.97438 * 19 18 17 31 31 H 1.08005 * 120.05928 * 179.97438 * 20 19 18 32 32 H 1.08005 * 125.22540 * 179.69893 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6965 -1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1971 -0.1067 9 6 1.2586 -2.4947 0.1507 10 1 0.4158 -2.3542 0.8275 11 7 0.7647 -2.9303 -1.1624 12 6 2.1844 -3.5429 0.7121 13 6 2.2297 -3.9175 1.9880 14 6 3.1648 -4.9102 2.2756 15 6 3.3584 -5.4603 3.6398 16 6 2.5884 -4.9868 4.7006 17 6 2.7688 -5.5060 5.9665 18 6 3.7195 -6.4866 6.1856 19 6 4.4902 -6.9565 5.1375 20 6 4.3146 -6.4483 3.8665 21 6 3.8816 -5.3246 1.2147 22 16 3.3698 -4.4464 -0.2203 23 1 -0.4850 -0.8400 0.0106 24 1 0.1466 -2.2408 -1.5633 25 1 1.5303 -3.1361 -1.7867 26 1 1.5880 -3.4878 2.7428 27 1 1.8492 -4.2178 4.5314 28 1 2.1699 -5.1427 6.7885 29 1 3.8603 -6.8871 7.1787 30 1 5.2313 -7.7219 5.3143 31 1 4.9172 -6.8157 3.0489 32 1 4.6532 -6.0799 1.2408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380657348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:35 Heat of formation + Delta-G solvation = 42.692937 kcal Electronic energy + Delta-G solvation = -15950.021736 eV Core-core repulsion = 13387.168146 eV Total energy + Delta-G solvation = -2562.853590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.36622 -37.15789 -35.03169 -31.75713 -30.96354 -30.65263 -28.27602 -25.58863 -24.10234 -22.65664 -21.95715 -20.51384 -18.60730 -17.52901 -16.83381 -16.08277 -15.26454 -15.03783 -14.32785 -13.87067 -13.75112 -13.47278 -13.39420 -12.95358 -12.74327 -12.24906 -11.88691 -11.85898 -11.84417 -11.14109 -10.90820 -10.81389 -10.52046 -10.21519 -9.86883 -9.59769 -9.16747 -8.88962 -8.73278 -8.08547 -7.50126 -7.34348 -6.55077 -4.35622 0.99912 1.46934 1.95496 2.22819 2.63770 3.27915 3.35065 3.35949 3.54277 4.11117 4.37801 4.89773 4.95715 5.00621 5.14440 5.20188 5.44208 5.49010 5.58166 5.76030 5.98129 6.07434 6.17789 6.26268 6.40393 6.49663 6.55854 6.66715 6.96128 6.98059 7.05459 7.22607 7.75808 8.12691 8.31686 8.53585 8.60059 9.36750 10.77565 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.005388 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.898611 B = 5195.953908 C = 5752.279989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.627 4.627 8 H 0.052 0.948 9 C 0.249 3.751 10 H 0.062 0.938 11 N -0.853 5.853 12 C -0.081 4.081 13 C -0.172 4.172 14 C -0.054 4.054 15 C -0.009 4.009 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.243 4.243 22 S 0.101 5.899 23 H 0.272 0.728 24 H 0.338 0.662 25 H 0.318 0.682 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 -11.087 7.186 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.667 4.667 8 H 0.071 0.929 9 C 0.138 3.862 10 H 0.079 0.921 11 N -0.381 5.381 12 C -0.199 4.199 13 C -0.200 4.200 14 C -0.067 4.067 15 C -0.012 4.012 16 C -0.128 4.128 17 C -0.136 4.136 18 C -0.149 4.149 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.379 4.379 22 S 0.367 5.633 23 H 0.083 0.917 24 H 0.151 0.849 25 H 0.129 0.871 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.957 -10.068 6.004 13.631 hybrid contribution 0.424 -0.768 1.231 1.512 sum 7.380 -10.837 7.236 14.975 Atomic orbital electron populations 1.70860 1.06805 1.30966 1.44866 1.25916 0.96352 1.02722 0.92609 0.83550 0.75011 0.75086 0.76810 1.20576 1.21203 1.21296 1.22526 0.95652 0.92021 1.56523 0.92929 1.17854 0.91654 0.87955 0.88707 0.92061 1.59631 1.22441 1.49837 1.06174 1.24919 0.99729 0.99267 0.95987 1.19793 1.02989 1.00711 0.96496 1.17688 0.98260 0.98504 0.92290 1.18592 0.95522 0.95334 0.91728 1.21328 0.99424 0.99865 0.92218 1.21079 0.98471 0.97193 0.96844 1.21125 0.96921 0.98070 0.98822 1.21020 0.99775 1.00185 0.92859 1.21175 0.98206 0.97014 0.97085 1.25492 1.07701 1.08172 0.96498 1.83950 1.33752 1.34122 1.11512 0.91651 0.84934 0.87129 0.84873 0.85567 0.86078 0.86404 0.86248 0.86120 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 13.61 55.43 0.75 -24.71 16 2 C 0.03 0.83 5.45 -17.82 -0.10 0.74 16 3 Si 1.07 24.28 29.91 -169.99 -5.08 19.19 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.63 -16.71 8.58 -34.44 -0.30 -17.01 16 8 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.25 6.07 2.74 -70.02 -0.19 5.88 16 10 H 0.06 1.63 7.06 -51.93 -0.37 1.26 16 11 N -0.85 -19.22 9.20 -6.66 -0.06 -19.28 16 12 C -0.08 -1.77 5.41 -36.11 -0.20 -1.96 16 13 C -0.17 -3.49 9.38 -40.96 -0.38 -3.88 16 14 C -0.05 -0.96 5.79 -106.60 -0.62 -1.58 16 15 C -0.01 -0.15 5.88 -104.90 -0.62 -0.76 16 16 C -0.11 -1.60 9.50 -39.25 -0.37 -1.98 16 17 C -0.12 -1.45 10.03 -39.63 -0.40 -1.84 16 18 C -0.13 -1.47 10.04 -39.52 -0.40 -1.87 16 19 C -0.12 -1.38 10.03 -39.63 -0.40 -1.78 16 20 C -0.12 -1.55 9.48 -39.25 -0.37 -1.92 16 21 C -0.24 -4.09 10.51 29.44 0.31 -3.78 16 22 S 0.10 1.87 22.38 -107.50 -2.41 -0.53 16 23 H 0.27 7.63 6.25 -40.82 -0.25 7.37 16 24 H 0.34 7.85 8.38 -39.29 -0.33 7.52 16 25 H 0.32 6.84 8.15 -39.29 -0.32 6.52 16 26 H 0.13 2.62 6.71 -52.49 -0.35 2.26 16 27 H 0.13 1.82 6.55 -52.49 -0.34 1.48 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.41 6.61 -52.48 -0.35 1.07 16 32 H 0.16 2.12 6.81 -52.48 -0.36 1.76 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -28.62 287.73 -9.63 -38.25 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -3.15 Total: 14.49 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: -4.02 Total: -31.75 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.69 Total: -43.99 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.19 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.41 Total: -0.53 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.62 -9.63 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380657348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.944 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds