Wall clock time and date at job start Mon Mar 30 2020 07:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99533 * 2 1 4 4 H 1.48498 * 109.47501 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47317 * 119.99935 * 3 2 1 6 6 H 1.48509 * 109.46840 * 239.99792 * 3 2 1 7 7 C 1.37876 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99952 * 173.41869 * 7 2 1 9 9 C 1.50692 * 119.99825 * 353.41871 * 7 2 1 10 10 H 1.08999 * 109.47355 * 324.49605 * 9 7 2 11 11 N 1.46899 * 109.46990 * 84.49782 * 9 7 2 12 12 C 1.50697 * 109.47243 * 204.49507 * 9 7 2 13 13 C 1.33051 * 125.03382 * 99.72098 * 12 9 7 14 14 C 1.39376 * 114.91722 * 179.79783 * 13 12 9 15 15 C 1.48364 * 122.77597 * 180.22791 * 14 13 12 16 16 C 1.39363 * 120.12018 * 0.04075 * 15 14 13 17 17 C 1.38013 * 119.87686 * 179.73624 * 16 15 14 18 18 C 1.38323 * 120.11893 * 0.53614 * 17 16 15 19 19 C 1.38327 * 120.25265 * 359.71672 * 18 17 16 20 20 C 1.38015 * 120.11730 * 0.02562 * 19 18 17 21 21 C 1.34578 * 114.45535 * 0.49495 * 14 13 12 22 22 S 1.75812 * 125.03587 * 280.02981 * 12 9 7 23 23 H 0.97003 * 119.99651 * 180.72128 * 1 2 3 24 24 H 1.00902 * 111.00548 * 300.41280 * 11 9 7 25 25 H 1.00898 * 111.00445 * 64.37201 * 11 9 7 26 26 H 1.07997 * 122.54279 * 0.02562 * 13 12 9 27 27 H 1.08002 * 120.05685 * 359.97015 * 16 15 14 28 28 H 1.07993 * 119.94143 * 180.24963 * 17 16 15 29 29 H 1.08000 * 119.87753 * 179.74274 * 18 17 16 30 30 H 1.07996 * 119.94207 * 179.97438 * 19 18 17 31 31 H 1.08005 * 120.05928 * 179.97438 * 20 19 18 32 32 H 1.08005 * 125.22540 * 179.69893 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6965 -1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1971 -0.1067 9 6 1.2586 -2.4947 0.1507 10 1 0.4158 -2.3542 0.8275 11 7 0.7647 -2.9303 -1.1624 12 6 2.1844 -3.5429 0.7121 13 6 2.2297 -3.9175 1.9880 14 6 3.1648 -4.9102 2.2756 15 6 3.3584 -5.4603 3.6398 16 6 2.5884 -4.9868 4.7006 17 6 2.7688 -5.5060 5.9665 18 6 3.7195 -6.4866 6.1856 19 6 4.4902 -6.9565 5.1375 20 6 4.3146 -6.4483 3.8665 21 6 3.8816 -5.3246 1.2147 22 16 3.3698 -4.4464 -0.2203 23 1 -0.4850 -0.8400 0.0106 24 1 0.1466 -2.2408 -1.5633 25 1 1.5303 -3.1361 -1.7867 26 1 1.5880 -3.4878 2.7428 27 1 1.8492 -4.2178 4.5314 28 1 2.1699 -5.1427 6.7885 29 1 3.8603 -6.8871 7.1787 30 1 5.2313 -7.7219 5.3143 31 1 4.9172 -6.8157 3.0489 32 1 4.6532 -6.0799 1.2408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380657348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:34 Heat of formation + Delta-G solvation = 26.339219 kcal Electronic energy + Delta-G solvation = -15950.730887 eV Core-core repulsion = 13387.168146 eV Total energy + Delta-G solvation = -2563.562740 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48225 -38.58246 -36.82387 -33.60623 -32.11729 -31.81976 -29.70319 -27.50008 -25.54576 -24.08155 -23.12337 -21.97858 -20.00643 -19.34478 -18.22405 -17.45133 -16.86234 -16.13716 -15.73696 -15.43206 -15.26772 -14.97185 -14.61307 -14.34699 -14.25248 -13.94187 -13.44911 -13.22152 -13.16311 -12.70218 -12.31789 -12.18452 -11.97185 -11.83621 -11.56419 -11.47464 -10.79786 -10.35177 -9.85258 -9.69769 -9.27109 -8.82604 -8.61289 -6.50839 -0.18768 0.50560 0.58292 0.75095 1.13556 1.49183 1.54868 1.75443 1.93736 2.48586 3.03698 3.06717 3.69883 3.92830 4.05911 4.09748 4.19689 4.33319 4.38684 4.59032 4.59347 4.65605 4.85010 5.05378 5.10077 5.19528 5.40986 5.43753 5.60403 5.61737 5.75791 5.81436 5.98412 6.10769 6.39087 6.43433 6.66741 7.28659 8.62673 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.005388 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.898611 B = 5195.953908 C = 5752.279989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 1.112 2.888 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.633 4.633 8 H 0.042 0.958 9 C 0.254 3.746 10 H 0.027 0.973 11 N -0.842 5.842 12 C -0.129 4.129 13 C -0.171 4.171 14 C -0.064 4.064 15 C -0.039 4.039 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.226 4.226 22 S 0.118 5.882 23 H 0.262 0.738 24 H 0.333 0.667 25 H 0.326 0.674 26 H 0.123 0.877 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.440 -12.807 8.431 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.215 4.215 3 Si 0.934 3.066 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.673 4.673 8 H 0.061 0.939 9 C 0.143 3.857 10 H 0.045 0.955 11 N -0.370 5.370 12 C -0.247 4.247 13 C -0.200 4.200 14 C -0.077 4.077 15 C -0.042 4.042 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.361 4.361 22 S 0.383 5.617 23 H 0.073 0.927 24 H 0.144 0.856 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.129 0.871 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 9.323 -11.814 7.245 16.703 hybrid contribution -0.278 -0.383 0.963 1.073 sum 9.045 -12.197 8.209 17.261 Atomic orbital electron populations 1.70956 1.07585 1.30412 1.46903 1.27183 0.96456 1.05984 0.91885 0.82984 0.74245 0.71660 0.77747 1.20620 1.20238 1.19548 1.22728 0.95159 0.93360 1.56074 0.93928 1.17565 0.90900 0.88536 0.88683 0.95480 1.59536 1.22469 1.49226 1.05721 1.24700 1.01746 1.00960 0.97314 1.19992 1.03157 1.01009 0.95865 1.17831 0.97727 0.97984 0.94167 1.18636 0.97639 0.97278 0.90624 1.21400 0.99774 1.00427 0.93515 1.21361 0.99067 0.97363 0.96296 1.21578 0.95449 0.96727 1.00432 1.21445 0.99966 1.00225 0.91944 1.21422 0.97517 0.96197 0.98700 1.25907 1.07491 1.07765 0.94931 1.83712 1.32479 1.33647 1.11838 0.92749 0.85577 0.86282 0.85872 0.87073 0.84113 0.83093 0.82890 0.84435 0.78943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.85 13.61 21.45 0.29 -53.56 16 2 C -0.01 -0.76 5.45 84.65 0.46 -0.30 16 3 Si 1.11 49.26 29.91 68.60 2.05 51.31 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.63 -34.72 8.58 25.60 0.22 -34.50 16 8 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 9 C 0.25 12.95 2.74 43.42 0.12 13.07 16 10 H 0.03 1.55 7.06 -2.39 -0.02 1.53 16 11 N -0.84 -39.23 9.20 -174.97 -1.61 -40.84 16 12 C -0.13 -5.81 5.41 24.52 0.13 -5.68 16 13 C -0.17 -7.20 9.38 21.38 0.20 -6.99 16 14 C -0.06 -2.28 5.79 -21.15 -0.12 -2.40 16 15 C -0.04 -1.20 5.88 -20.04 -0.12 -1.31 16 16 C -0.13 -3.85 9.50 22.49 0.21 -3.64 16 17 C -0.12 -2.78 10.03 22.24 0.22 -2.55 16 18 C -0.12 -2.30 10.04 22.31 0.22 -2.08 16 19 C -0.12 -2.22 10.03 22.24 0.22 -2.00 16 20 C -0.12 -2.84 9.48 22.48 0.21 -2.62 16 21 C -0.23 -7.15 10.51 66.98 0.70 -6.45 16 22 S 0.12 4.29 22.38 -56.49 -1.26 3.03 16 23 H 0.26 15.42 6.25 -92.71 -0.58 14.84 16 24 H 0.33 16.05 8.38 -89.69 -0.75 15.30 16 25 H 0.33 14.26 8.15 -89.70 -0.73 13.53 16 26 H 0.12 5.23 6.71 -2.91 -0.02 5.21 16 27 H 0.11 3.42 6.55 -2.91 -0.02 3.40 16 28 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.14 2.67 6.61 -2.91 -0.02 2.65 16 32 H 0.19 4.52 6.81 -2.91 -0.02 4.50 16 Total: -1.00 -63.37 287.73 2.04 -61.33 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.13 Total: 36.20 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 2.69 Total: -57.48 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -1.32 Total: -94.40 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.26 Total: 3.03 kcal Total: -63.37 2.04 -61.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380657348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.672 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds