Wall clock time and date at job start Mon Mar 30 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86796 * 120.00329 * 2 1 4 4 H 1.48505 * 109.46885 * 85.01654 * 3 2 1 5 5 H 1.48502 * 109.47227 * 205.01159 * 3 2 1 6 6 H 1.48501 * 109.46958 * 325.01594 * 3 2 1 7 7 C 1.40120 * 119.99701 * 179.72190 * 2 1 3 8 8 H 1.08001 * 119.99672 * 187.24803 * 7 2 1 9 9 C 1.40922 * 120.00036 * 7.25551 * 7 2 1 10 10 N 1.33818 * 119.69295 * 7.12384 * 9 7 2 11 11 C 1.31164 * 121.51052 * 179.74886 * 10 9 7 12 12 C 1.40155 * 120.72528 * 0.53052 * 11 10 9 13 13 C 1.47980 * 120.33186 * 179.71187 * 12 11 10 14 14 C 1.39614 * 120.14516 * 179.74650 * 13 12 11 15 15 C 1.37935 * 119.85654 * 179.79611 * 14 13 12 16 16 C 1.38395 * 120.13979 * 0.48374 * 15 14 13 17 17 C 1.38394 * 120.29533 * 359.74583 * 16 15 14 18 18 C 1.37932 * 120.14558 * 0.02562 * 17 16 15 19 19 C 1.40142 * 119.33514 * 359.74022 * 12 11 10 20 20 C 1.36896 * 118.59455 * 359.97438 * 19 12 11 21 21 Cl 1.73589 * 120.38841 * 179.97438 * 20 19 12 22 22 H 0.96998 * 119.99518 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.63427 * 180.26535 * 11 10 9 24 24 H 1.08004 * 120.07445 * 0.02562 * 14 13 12 25 25 H 1.07992 * 119.93105 * 180.23241 * 15 14 13 26 26 H 1.08002 * 119.84993 * 179.76601 * 16 15 14 27 27 H 1.08001 * 119.92472 * 179.97438 * 17 16 15 28 28 H 1.07994 * 120.07318 * 180.02562 * 18 17 16 29 29 H 1.07994 * 120.70574 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.3834 2.1071 1.3948 5 1 3.5876 1.4119 -0.5920 6 1 1.4954 2.6199 -0.8027 7 6 2.0077 -1.2135 0.0059 8 1 3.0812 -1.2167 0.1239 9 6 1.3115 -2.4297 -0.1423 10 7 0.0049 -2.4147 -0.4308 11 6 -0.6768 -3.5251 -0.5813 12 6 -0.0553 -4.7725 -0.4327 13 6 -0.8342 -6.0199 -0.5982 14 6 -0.2100 -7.2605 -0.4546 15 6 -0.9426 -8.4193 -0.6059 16 6 -2.2913 -8.3542 -0.9094 17 6 -2.9151 -7.1278 -1.0579 18 6 -2.1950 -5.9614 -0.9045 19 6 1.3109 -4.8267 -0.1253 20 6 1.9969 -3.6510 0.0199 21 17 3.6903 -3.6638 0.4013 22 1 -0.4849 0.8401 -0.0004 23 1 -1.7295 -3.4776 -0.8181 24 1 0.8433 -7.3126 -0.2218 25 1 -0.4618 -9.3795 -0.4914 26 1 -2.8596 -9.2646 -1.0306 27 1 -3.9678 -7.0840 -1.2951 28 1 -2.6831 -5.0050 -1.0202 29 1 1.8119 -5.7759 -0.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380787030.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:11 Heat of formation + Delta-G solvation = 38.725147 kcal Electronic energy + Delta-G solvation = -15780.730468 eV Core-core repulsion = 13079.828021 eV Total energy + Delta-G solvation = -2700.902447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.07685 -37.81070 -35.28472 -34.10395 -31.96861 -30.87157 -30.05738 -28.88928 -25.71093 -22.97017 -22.54052 -20.97858 -20.33852 -17.83069 -16.77968 -15.87224 -15.28032 -14.86150 -14.42352 -13.83390 -13.71285 -13.04065 -13.00776 -12.92175 -12.25386 -12.19436 -11.68073 -11.42577 -11.26024 -11.01978 -10.77420 -10.70561 -10.47894 -10.40404 -9.76788 -9.62911 -8.97642 -8.50574 -8.10914 -7.90100 -7.32885 -6.81551 -4.76309 1.53323 1.87521 2.56453 2.79048 2.94510 2.98772 3.07012 3.46012 3.72873 4.24462 4.61375 5.31772 5.34146 5.43097 5.57705 5.59840 5.84775 5.86956 6.00021 6.09761 6.39463 6.43119 6.50510 6.74844 6.83078 6.86730 6.94390 7.04810 7.17442 7.48690 7.55665 7.65205 7.95578 8.23160 8.52145 9.72166 9.92813 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.005775 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.479931 B = 4847.162723 C = 5788.040918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.063 3.937 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.256 1.256 6 H -0.271 1.271 7 C -0.387 4.387 8 H 0.100 0.900 9 C 0.255 3.745 10 N -0.479 5.479 11 C 0.161 3.839 12 C -0.272 4.272 13 C 0.032 3.968 14 C -0.149 4.149 15 C -0.110 4.110 16 C -0.164 4.164 17 C -0.109 4.109 18 C -0.146 4.146 19 C -0.020 4.020 20 C -0.182 4.182 21 Cl -0.111 7.111 22 H 0.282 0.718 23 H 0.130 0.870 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 -5.998 -0.743 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.166 4.166 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.179 1.179 6 H -0.196 1.196 7 C -0.416 4.416 8 H 0.118 0.882 9 C 0.133 3.867 10 N -0.190 5.190 11 C -0.010 4.010 12 C -0.277 4.277 13 C 0.030 3.970 14 C -0.167 4.167 15 C -0.128 4.128 16 C -0.182 4.182 17 C -0.127 4.127 18 C -0.164 4.164 19 C -0.044 4.044 20 C -0.213 4.213 21 Cl -0.083 7.083 22 H 0.093 0.907 23 H 0.147 0.853 24 H 0.134 0.866 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.756 -4.956 -0.770 5.314 hybrid contribution 0.844 -0.271 0.148 0.899 sum -0.912 -5.227 -0.622 5.342 Atomic orbital electron populations 1.70041 1.07634 1.29088 1.24511 1.26248 0.95014 1.01839 0.93478 0.86174 0.80796 0.79832 0.79501 1.19028 1.17933 1.19620 1.20010 0.96015 0.89388 1.36151 0.88221 1.18464 0.88269 0.90721 0.89253 1.68891 1.06135 1.26476 1.17503 1.22833 0.98672 0.87732 0.91730 1.18945 0.93503 0.92812 1.22472 1.18796 0.92536 0.92329 0.93293 1.21164 0.99747 0.91956 1.03826 1.20927 0.94330 0.97644 0.99896 1.20920 0.95076 0.97189 1.05043 1.20943 0.99129 0.92641 1.00007 1.21173 0.93894 0.98102 1.03226 1.20573 0.93062 0.95853 0.94921 1.21373 0.84271 0.95891 1.19721 1.98211 1.17511 1.98821 1.93733 0.90699 0.85320 0.86628 0.87056 0.87237 0.86927 0.86222 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.08 11.55 55.56 0.64 -16.44 15 2 C 0.06 1.49 5.47 -17.32 -0.09 1.39 15 3 Si 0.91 17.36 29.57 -169.99 -5.03 12.33 15 4 H -0.27 -4.96 7.11 56.52 0.40 -4.55 15 5 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 7 C -0.39 -9.72 8.79 -37.86 -0.33 -10.05 15 8 H 0.10 2.38 6.67 -52.49 -0.35 2.03 15 9 C 0.26 6.60 6.52 -84.95 -0.55 6.04 15 10 N -0.48 -12.41 7.94 -10.82 -0.09 -12.50 15 11 C 0.16 3.70 10.60 -17.12 -0.18 3.52 15 12 C -0.27 -5.88 5.91 -104.47 -0.62 -6.50 15 13 C 0.03 0.60 5.88 -104.88 -0.62 -0.02 15 14 C -0.15 -2.55 9.44 -39.18 -0.37 -2.92 15 15 C -0.11 -1.64 10.03 -39.63 -0.40 -2.03 15 16 C -0.16 -2.33 10.04 -39.47 -0.40 -2.73 15 17 C -0.11 -1.62 10.03 -39.64 -0.40 -2.02 15 18 C -0.15 -2.49 9.44 -39.18 -0.37 -2.86 15 19 C -0.02 -0.44 9.25 -39.35 -0.36 -0.81 15 20 C -0.18 -4.29 6.35 -39.03 -0.25 -4.54 15 21 Cl -0.11 -2.31 27.39 -51.86 -1.42 -3.73 15 22 H 0.28 6.20 8.29 -40.82 -0.34 5.86 15 23 H 0.13 2.62 6.21 -52.48 -0.33 2.29 15 24 H 0.12 1.88 6.25 -52.48 -0.33 1.55 15 25 H 0.11 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.11 1.27 8.06 -52.49 -0.42 0.84 15 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.12 1.92 6.22 -52.49 -0.33 1.60 15 29 H 0.11 2.14 6.29 -52.49 -0.33 1.81 15 LS Contribution 269.64 15.07 4.06 4.06 Total: -1.00 -26.71 269.64 -8.83 -35.54 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.06 Total: 4.26 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -4.94 Total: -23.52 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 0.56 Total: -28.94 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.42 Total: -3.73 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.71 -8.83 -35.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380787030.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.263 kcal (2) G-P(sol) polarization free energy of solvation -26.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds