Wall clock time and date at job start Mon Mar 30 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86796 * 120.00329 * 2 1 4 4 H 1.48505 * 109.46885 * 85.01654 * 3 2 1 5 5 H 1.48502 * 109.47227 * 205.01159 * 3 2 1 6 6 H 1.48501 * 109.46958 * 325.01594 * 3 2 1 7 7 C 1.40120 * 119.99701 * 179.72190 * 2 1 3 8 8 H 1.08001 * 119.99672 * 187.24803 * 7 2 1 9 9 C 1.40922 * 120.00036 * 7.25551 * 7 2 1 10 10 N 1.33818 * 119.69295 * 7.12384 * 9 7 2 11 11 C 1.31164 * 121.51052 * 179.74886 * 10 9 7 12 12 C 1.40155 * 120.72528 * 0.53052 * 11 10 9 13 13 C 1.47980 * 120.33186 * 179.71187 * 12 11 10 14 14 C 1.39614 * 120.14516 * 179.74650 * 13 12 11 15 15 C 1.37935 * 119.85654 * 179.79611 * 14 13 12 16 16 C 1.38395 * 120.13979 * 0.48374 * 15 14 13 17 17 C 1.38394 * 120.29533 * 359.74583 * 16 15 14 18 18 C 1.37932 * 120.14558 * 0.02562 * 17 16 15 19 19 C 1.40142 * 119.33514 * 359.74022 * 12 11 10 20 20 C 1.36896 * 118.59455 * 359.97438 * 19 12 11 21 21 Cl 1.73589 * 120.38841 * 179.97438 * 20 19 12 22 22 H 0.96998 * 119.99518 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.63427 * 180.26535 * 11 10 9 24 24 H 1.08004 * 120.07445 * 0.02562 * 14 13 12 25 25 H 1.07992 * 119.93105 * 180.23241 * 15 14 13 26 26 H 1.08002 * 119.84993 * 179.76601 * 16 15 14 27 27 H 1.08001 * 119.92472 * 179.97438 * 17 16 15 28 28 H 1.07994 * 120.07318 * 180.02562 * 18 17 16 29 29 H 1.07994 * 120.70574 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.3834 2.1071 1.3948 5 1 3.5876 1.4119 -0.5920 6 1 1.4954 2.6199 -0.8027 7 6 2.0077 -1.2135 0.0059 8 1 3.0812 -1.2167 0.1239 9 6 1.3115 -2.4297 -0.1423 10 7 0.0049 -2.4147 -0.4308 11 6 -0.6768 -3.5251 -0.5813 12 6 -0.0553 -4.7725 -0.4327 13 6 -0.8342 -6.0199 -0.5982 14 6 -0.2100 -7.2605 -0.4546 15 6 -0.9426 -8.4193 -0.6059 16 6 -2.2913 -8.3542 -0.9094 17 6 -2.9151 -7.1278 -1.0579 18 6 -2.1950 -5.9614 -0.9045 19 6 1.3109 -4.8267 -0.1253 20 6 1.9969 -3.6510 0.0199 21 17 3.6903 -3.6638 0.4013 22 1 -0.4849 0.8401 -0.0004 23 1 -1.7295 -3.4776 -0.8181 24 1 0.8433 -7.3126 -0.2218 25 1 -0.4618 -9.3795 -0.4914 26 1 -2.8596 -9.2646 -1.0306 27 1 -3.9678 -7.0840 -1.2951 28 1 -2.6831 -5.0050 -1.0202 29 1 1.8119 -5.7759 -0.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380787030.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:11 Heat of formation + Delta-G solvation = 26.248014 kcal Electronic energy + Delta-G solvation = -15781.271517 eV Core-core repulsion = 13079.828021 eV Total energy + Delta-G solvation = -2701.443496 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64258 -39.28795 -37.00404 -35.80402 -33.54686 -32.42904 -31.49344 -30.46319 -27.37623 -24.52300 -24.10595 -22.44455 -21.83671 -19.58138 -18.20662 -17.50375 -16.69142 -16.53068 -15.95493 -15.29146 -15.10490 -14.73894 -14.49491 -14.32121 -13.74920 -13.58144 -13.26399 -12.96847 -12.87583 -12.74853 -12.47965 -12.02966 -11.95802 -11.74713 -11.39839 -11.31191 -10.58125 -9.81146 -9.73108 -9.68581 -8.93158 -8.53551 -6.56935 0.08433 0.63694 0.82149 1.20330 1.38878 1.52720 1.56725 1.70265 2.16637 2.66091 3.15060 3.76964 4.03479 4.04307 4.10843 4.25822 4.31350 4.45044 4.63863 4.75248 4.76132 5.00196 5.11534 5.13686 5.32891 5.37631 5.45993 5.71706 5.73971 5.92286 6.00020 6.15021 6.28042 6.47069 6.72115 7.93438 8.24493 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.005775 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.479931 B = 4847.162723 C = 5788.040918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.024 3.976 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.254 1.254 6 H -0.263 1.263 7 C -0.426 4.426 8 H 0.101 0.899 9 C 0.227 3.773 10 N -0.510 5.510 11 C 0.139 3.861 12 C -0.258 4.258 13 C -0.007 4.007 14 C -0.155 4.155 15 C -0.112 4.112 16 C -0.149 4.149 17 C -0.112 4.112 18 C -0.153 4.153 19 C -0.028 4.028 20 C -0.200 4.200 21 Cl -0.093 7.093 22 H 0.288 0.712 23 H 0.146 0.854 24 H 0.118 0.882 25 H 0.143 0.857 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -8.036 -0.985 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.201 4.201 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.178 1.178 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.119 0.881 9 C 0.104 3.896 10 N -0.222 5.222 11 C -0.029 4.029 12 C -0.264 4.264 13 C -0.008 4.008 14 C -0.173 4.173 15 C -0.130 4.130 16 C -0.167 4.167 17 C -0.130 4.130 18 C -0.171 4.171 19 C -0.052 4.052 20 C -0.231 4.231 21 Cl -0.065 7.065 22 H 0.099 0.901 23 H 0.163 0.837 24 H 0.136 0.864 25 H 0.161 0.839 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.138 0.862 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.449 -7.033 -1.016 7.516 hybrid contribution 0.902 -0.016 0.193 0.922 sum -1.547 -7.049 -0.823 7.264 Atomic orbital electron populations 1.70104 1.09113 1.30299 1.26034 1.27096 0.95727 1.04827 0.92404 0.85113 0.79250 0.75323 0.79731 1.18301 1.17786 1.18739 1.20225 0.96245 0.90298 1.38740 0.88130 1.18843 0.88720 0.91986 0.90019 1.68824 1.06744 1.28025 1.18612 1.23190 0.99510 0.87944 0.92299 1.19277 0.93697 0.93730 1.19659 1.18827 0.93472 0.91840 0.96648 1.21342 1.00253 0.92142 1.03570 1.21315 0.94781 0.98085 0.98821 1.21442 0.94990 0.98335 1.01916 1.21323 1.00594 0.92007 0.99027 1.21352 0.93405 0.99399 1.02991 1.20856 0.93354 0.96265 0.94731 1.21502 0.85485 0.95905 1.20196 1.98193 1.15871 1.98790 1.93619 0.90067 0.83712 0.86372 0.83913 0.83565 0.83888 0.86203 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.63 11.55 21.85 0.25 -37.38 15 2 C 0.02 1.18 5.47 85.32 0.47 1.64 15 3 Si 0.99 36.29 29.57 68.60 2.03 38.32 15 4 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 5 H -0.25 -9.16 7.11 99.48 0.71 -8.45 15 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 7 C -0.43 -22.25 8.79 23.38 0.21 -22.04 15 8 H 0.10 4.99 6.67 -2.91 -0.02 4.97 15 9 C 0.23 12.24 6.52 40.17 0.26 12.50 15 10 N -0.51 -27.61 7.94 -188.13 -1.49 -29.10 15 11 C 0.14 6.60 10.60 85.26 0.90 7.50 15 12 C -0.26 -11.31 5.91 -19.77 -0.12 -11.42 15 13 C -0.01 -0.26 5.88 -20.03 -0.12 -0.37 15 14 C -0.15 -4.97 9.44 22.53 0.21 -4.76 15 15 C -0.11 -2.89 10.03 22.24 0.22 -2.66 15 16 C -0.15 -3.51 10.04 22.34 0.22 -3.29 15 17 C -0.11 -2.90 10.03 22.23 0.22 -2.68 15 18 C -0.15 -4.98 9.44 22.53 0.21 -4.77 15 19 C -0.03 -1.24 9.25 22.42 0.21 -1.04 15 20 C -0.20 -9.69 6.35 22.63 0.14 -9.55 15 21 Cl -0.09 -3.91 27.39 -2.72 -0.07 -3.98 15 22 H 0.29 13.14 8.29 -92.71 -0.77 12.37 15 23 H 0.15 6.10 6.21 -2.91 -0.02 6.08 15 24 H 0.12 3.63 6.25 -2.91 -0.02 3.61 15 25 H 0.14 2.77 8.06 -2.91 -0.02 2.75 15 26 H 0.15 2.44 8.06 -2.91 -0.02 2.42 15 27 H 0.14 2.83 8.06 -2.91 -0.02 2.80 15 28 H 0.12 3.77 6.22 -2.91 -0.02 3.76 15 29 H 0.13 5.06 6.29 -2.91 -0.02 5.04 15 Total: -1.00 -59.58 269.64 4.95 -54.63 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.19 Total: 18.46 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.05 Total: -40.94 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -1.24 Total: -66.48 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Atomic # 17 Polarization: -3.91 SS G_CDS: -0.07 Total: -3.98 kcal Total: -59.58 4.95 -54.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380787030.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.876 kcal (2) G-P(sol) polarization free energy of solvation -59.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds