Wall clock time and date at job start Mon Mar 30 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48503 * 109.46881 * 270.42070 * 3 2 1 5 5 H 1.48497 * 109.47351 * 30.41644 * 3 2 1 6 6 H 1.48498 * 109.47292 * 150.42338 * 3 2 1 7 7 C 1.40068 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00403 * 342.18229 * 7 2 1 9 9 C 1.40887 * 119.99501 * 162.17286 * 7 2 1 10 10 C 1.41114 * 120.71662 * 331.31798 * 9 7 2 11 11 C 1.37984 * 118.27859 * 180.02562 * 10 9 7 12 12 Cl 1.73599 * 120.18412 * 180.02562 * 11 10 9 13 13 C 1.39027 * 119.63314 * 359.97438 * 11 10 9 14 14 N 1.31715 * 121.47024 * 359.74376 * 13 11 10 15 15 C 1.32531 * 121.87266 * 0.53041 * 14 13 11 16 16 C 1.47822 * 119.91395 * 179.75247 * 15 14 13 17 17 C 1.39678 * 120.14793 * 316.05292 * 16 15 14 18 18 C 1.37915 * 119.84048 * 179.97438 * 17 16 15 19 19 C 1.38404 * 120.15599 * 0.02562 * 18 17 16 20 20 C 1.38400 * 120.30411 * 359.97438 * 19 18 17 21 21 C 1.37915 * 120.15420 * 0.03341 * 20 19 18 22 22 H 0.97002 * 120.00393 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.86535 * 359.97438 * 10 9 7 24 24 H 1.08001 * 119.26378 * 180.02562 * 13 11 10 25 25 H 1.07995 * 120.07744 * 0.24902 * 17 16 15 26 26 H 1.07999 * 119.92272 * 179.97438 * 18 17 16 27 27 H 1.08000 * 119.84644 * 179.97438 * 19 18 17 28 28 H 1.08000 * 119.92188 * 180.02562 * 20 19 18 29 29 H 1.08004 * 120.07930 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4802 2.0516 -1.4001 5 1 1.4436 2.6501 0.7088 6 1 3.5437 1.4377 0.6910 7 6 2.0081 -1.2130 0.0005 8 1 1.5071 -2.1258 0.2871 9 6 3.3663 -1.2423 -0.3730 10 6 3.8845 -0.2953 -1.2817 11 6 5.2219 -0.3708 -1.6129 12 17 5.9113 0.7696 -2.7255 13 6 6.0144 -1.3647 -1.0499 14 7 5.5191 -2.2393 -0.1986 15 6 4.2424 -2.2244 0.1567 16 6 3.7311 -3.2302 1.1117 17 6 4.0986 -4.5715 0.9815 18 6 3.6183 -5.5046 1.8764 19 6 2.7738 -5.1146 2.9012 20 6 2.4057 -3.7873 3.0360 21 6 2.8784 -2.8437 2.1482 22 1 -0.4851 0.8400 -0.0004 23 1 3.2506 0.4685 -1.7077 24 1 7.0605 -1.4181 -1.3130 25 1 4.7607 -4.8764 0.1847 26 1 3.9012 -6.5421 1.7768 27 1 2.4003 -5.8495 3.5990 28 1 1.7467 -3.4898 3.8382 29 1 2.5900 -1.8083 2.2542 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380812991.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:00 Heat of formation + Delta-G solvation = 34.342170 kcal Electronic energy + Delta-G solvation = -16245.198760 eV Core-core repulsion = 13544.106252 eV Total energy + Delta-G solvation = -2701.092507 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.27830 -37.81516 -35.88958 -34.32018 -31.82041 -31.63033 -30.23277 -28.62318 -25.89161 -23.21856 -22.12613 -21.38076 -20.41090 -17.84947 -16.85432 -16.08553 -15.36675 -15.08783 -14.47849 -14.07585 -13.94432 -13.24604 -13.04409 -12.73976 -12.44464 -12.27214 -12.03634 -11.78155 -11.21790 -11.08055 -11.00945 -10.71687 -10.40862 -10.40778 -10.04454 -9.69782 -8.67319 -8.55935 -8.37655 -8.23729 -7.55116 -7.31841 -4.83324 1.56720 2.07395 2.24943 2.44425 2.81548 2.89923 2.98522 3.08451 3.68709 4.18004 4.45346 5.07184 5.27572 5.48325 5.56169 5.68665 5.84910 5.91885 6.09216 6.20086 6.26715 6.40368 6.52373 6.69010 6.74339 6.98730 7.01782 7.10440 7.19980 7.40851 7.45210 7.64989 7.94031 8.10000 8.34089 9.09212 9.65987 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.009187 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.210836 B = 3047.072463 C = 4379.944045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.083 3.917 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.411 4.411 8 H 0.109 0.891 9 C 0.067 3.933 10 C -0.210 4.210 11 C -0.022 4.022 12 Cl -0.104 7.104 13 C -0.032 4.032 14 N -0.427 5.427 15 C 0.043 3.957 16 C 0.010 3.990 17 C -0.105 4.105 18 C -0.132 4.132 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.088 4.088 22 H 0.293 0.707 23 H 0.124 0.876 24 H 0.137 0.863 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -1.730 1.894 4.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.438 4.438 8 H 0.127 0.873 9 C 0.061 3.939 10 C -0.236 4.236 11 C -0.050 4.050 12 Cl -0.076 7.076 13 C -0.190 4.190 14 N -0.134 5.134 15 C -0.099 4.099 16 C 0.009 3.991 17 C -0.124 4.124 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.107 4.107 22 H 0.104 0.896 23 H 0.142 0.858 24 H 0.154 0.846 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.568 -2.141 2.136 4.677 hybrid contribution -0.328 1.585 -0.673 1.753 sum 3.240 -0.557 1.463 3.598 Atomic orbital electron populations 1.69636 1.08136 1.31199 1.30759 1.26283 0.94853 1.01937 0.90955 0.86440 0.81118 0.79574 0.80000 1.18634 1.20875 1.16687 1.19598 0.92164 0.96640 1.35358 0.87307 1.18344 0.94058 0.90878 0.90629 1.21381 0.93630 1.04974 1.03585 1.21870 0.94554 0.93478 0.95143 1.98287 1.85316 1.61212 1.62765 1.21636 0.98992 0.95950 1.02382 1.67165 1.14280 1.21955 1.10029 1.19587 0.88684 1.00129 1.01549 1.18352 0.95598 0.91723 0.93384 1.21222 0.99622 0.92383 0.99146 1.20914 0.99227 0.98791 0.96086 1.21033 0.99582 0.95996 0.98800 1.20982 1.00823 0.93268 0.99649 1.21443 0.95747 1.00434 0.93035 0.89590 0.85834 0.84606 0.86465 0.86941 0.87116 0.86690 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.51 13.93 55.55 0.77 -17.74 15 2 C 0.08 1.96 5.43 -17.31 -0.09 1.87 15 3 Si 0.90 19.10 24.55 -169.99 -4.17 14.92 15 4 H -0.26 -5.42 6.45 56.52 0.36 -5.06 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 6 H -0.24 -5.37 7.02 56.52 0.40 -4.98 15 7 C -0.41 -9.97 7.22 -37.89 -0.27 -10.25 15 8 H 0.11 2.78 6.67 -52.49 -0.35 2.43 15 9 C 0.07 1.60 5.13 -106.42 -0.55 1.05 15 10 C -0.21 -4.85 7.17 -38.58 -0.28 -5.13 15 11 C -0.02 -0.47 6.33 -39.38 -0.25 -0.72 15 12 Cl -0.10 -1.91 28.97 -51.86 -1.50 -3.42 15 13 C -0.03 -0.68 10.97 -17.31 -0.19 -0.87 15 14 N -0.43 -9.71 10.14 -9.15 -0.09 -9.81 15 15 C 0.04 0.99 6.43 -82.26 -0.53 0.46 15 16 C 0.01 0.22 5.25 -104.90 -0.55 -0.33 15 17 C -0.10 -1.98 9.66 -39.16 -0.38 -2.36 15 18 C -0.13 -2.14 10.03 -39.64 -0.40 -2.54 15 19 C -0.14 -2.13 10.04 -39.46 -0.40 -2.52 15 20 C -0.13 -2.20 10.03 -39.64 -0.40 -2.60 15 21 C -0.09 -1.74 7.85 -39.16 -0.31 -2.05 15 22 H 0.29 6.30 8.30 -40.82 -0.34 5.96 15 23 H 0.12 2.83 4.50 -52.48 -0.24 2.59 15 24 H 0.14 2.54 8.06 -52.49 -0.42 2.12 15 25 H 0.12 2.16 8.06 -52.49 -0.42 1.74 15 26 H 0.11 1.50 8.06 -52.49 -0.42 1.07 15 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 15 28 H 0.12 1.68 8.06 -52.49 -0.42 1.25 15 29 H 0.13 2.75 6.74 -52.48 -0.35 2.39 15 LS Contribution 266.19 15.07 4.01 4.01 Total: -1.00 -25.01 266.19 -7.80 -32.81 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.23 Total: 5.22 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -4.59 Total: -26.00 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.68 Total: -27.55 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.17 Total: 14.92 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -1.50 Total: -3.42 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.01 -7.80 -32.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380812991.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.147 kcal (2) G-P(sol) polarization free energy of solvation -25.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds