Wall clock time and date at job start Mon Mar 30 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00239 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00181 * 3 2 1 7 7 C 1.40153 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.40795 * 119.99687 * 0.28156 * 7 2 1 10 10 N 1.33712 * 119.93752 * 359.71643 * 9 7 2 11 11 C 1.31374 * 121.62542 * 180.02562 * 10 9 7 12 12 Cl 1.73597 * 119.35281 * 179.97438 * 11 10 9 13 13 C 1.39258 * 121.30010 * 0.02562 * 11 10 9 14 14 C 1.38320 * 119.71651 * 359.97438 * 13 11 10 15 15 C 1.39721 * 118.49017 * 359.72713 * 14 13 11 16 16 C 1.47808 * 120.63616 * 180.28696 * 15 14 13 17 17 C 1.39696 * 120.15556 * 129.97698 * 16 15 14 18 18 C 1.37912 * 119.84592 * 179.70097 * 17 16 15 19 19 C 1.38410 * 120.14816 * 0.59414 * 18 17 16 20 20 C 1.38408 * 120.31580 * 359.68008 * 19 18 17 21 21 C 1.37917 * 120.14605 * 0.02562 * 20 19 18 22 22 H 0.96996 * 120.00343 * 359.97438 * 1 2 3 23 23 H 1.07993 * 120.14179 * 179.97438 * 13 11 10 24 24 H 1.07992 * 120.75659 * 180.02562 * 14 13 11 25 25 H 1.08000 * 120.07561 * 359.96844 * 17 16 15 26 26 H 1.07993 * 119.92566 * 180.29529 * 18 17 16 27 27 H 1.08006 * 119.84286 * 179.69897 * 19 18 17 28 28 H 1.07993 * 119.92817 * 180.02562 * 20 19 18 29 29 H 1.08002 * 120.07081 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8822 2.3964 1.2126 7 6 2.0077 -1.2138 0.0005 8 1 3.0877 -1.2137 0.0001 9 6 1.3037 -2.4330 -0.0049 10 7 -0.0334 -2.4315 -0.0049 11 6 -0.7236 -3.5494 -0.0093 12 17 -2.4581 -3.4786 -0.0083 13 6 -0.0911 -4.7901 -0.0138 14 6 1.2905 -4.8554 -0.0141 15 6 2.0142 -3.6602 -0.0157 16 6 3.4922 -3.6747 -0.0225 17 6 4.1973 -2.9042 -0.9502 18 6 5.5764 -2.9177 -0.9468 19 6 6.2616 -3.7018 -0.0350 20 6 5.5695 -4.4721 0.8833 21 6 4.1904 -4.4634 0.8951 22 1 -0.4850 0.8400 0.0004 23 1 -0.6769 -5.6973 -0.0171 24 1 1.7983 -5.8085 -0.0180 25 1 3.6638 -2.2960 -1.6656 26 1 6.1228 -2.3189 -1.6603 27 1 7.3416 -3.7124 -0.0399 28 1 6.1105 -5.0812 1.5922 29 1 3.6515 -5.0646 1.6124 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380844392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:13 Heat of formation + Delta-G solvation = 28.665404 kcal Electronic energy + Delta-G solvation = -16173.932018 eV Core-core repulsion = 13472.593348 eV Total energy + Delta-G solvation = -2701.338670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62538 -39.19463 -37.21990 -35.60434 -33.67932 -32.42620 -31.56491 -29.90520 -27.69311 -24.38673 -23.72155 -22.80202 -21.72957 -19.57197 -17.86756 -17.67023 -16.51805 -16.41155 -16.23690 -15.45503 -14.97288 -14.67317 -14.50845 -14.13417 -13.98258 -13.53052 -13.11611 -13.05833 -12.78678 -12.57614 -12.31202 -11.95858 -11.93476 -11.75197 -11.59843 -11.24728 -10.33614 -9.90542 -9.68773 -9.62577 -8.99515 -8.41113 -6.57765 0.25754 0.68668 0.83408 1.14089 1.29735 1.37966 1.47704 1.53401 2.17126 2.70618 3.08710 3.74022 4.09435 4.23915 4.29281 4.35685 4.45544 4.58056 4.71801 4.76509 4.88845 4.97767 5.18374 5.24113 5.31839 5.48267 5.64727 5.73960 5.76484 5.96825 6.02430 6.16779 6.31842 6.58444 6.80801 7.87546 8.31840 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.009558 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.313091 B = 2928.896601 C = 4647.999467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.022 3.978 3 Si 0.980 3.020 4 H -0.249 1.249 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.436 4.436 8 H 0.105 0.895 9 C 0.246 3.754 10 N -0.514 5.514 11 C 0.197 3.803 12 Cl -0.077 7.077 13 C -0.299 4.299 14 C -0.028 4.028 15 C -0.235 4.235 16 C -0.009 4.009 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.136 4.136 22 H 0.282 0.718 23 H 0.133 0.867 24 H 0.140 0.860 25 H 0.106 0.894 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -4.105 0.079 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.172 1.172 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.465 4.465 8 H 0.123 0.877 9 C 0.123 3.877 10 N -0.229 5.229 11 C 0.023 3.977 12 Cl -0.049 7.049 13 C -0.323 4.323 14 C -0.052 4.052 15 C -0.240 4.240 16 C -0.010 4.010 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.154 4.154 20 C -0.137 4.137 21 C -0.154 4.154 22 H 0.093 0.907 23 H 0.151 0.849 24 H 0.158 0.842 25 H 0.124 0.876 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.549 -3.132 0.080 8.173 hybrid contribution -0.295 0.011 -0.036 0.297 sum 7.254 -3.121 0.044 7.897 Atomic orbital electron populations 1.70210 1.08988 1.29536 1.27528 1.27092 0.95634 1.04771 0.92641 0.85176 0.79821 0.76099 0.78957 1.17213 1.18893 1.19171 1.20186 0.95579 0.89613 1.41155 0.87708 1.18742 0.86230 0.93065 0.89622 1.67835 1.08221 1.27023 1.19816 1.22038 0.85988 0.91498 0.98158 1.98274 1.10933 1.98861 1.96811 1.21135 0.94987 0.95860 1.20332 1.21232 0.92678 0.97191 0.94112 1.19772 0.93174 0.93780 1.17303 1.18701 0.91070 0.96101 0.95143 1.21366 0.94878 0.99299 0.98886 1.21311 0.93243 0.99763 0.99973 1.21452 1.00887 0.97243 0.95843 1.21317 0.93266 0.99715 0.99416 1.21403 0.95082 1.00224 0.98724 0.90723 0.84928 0.84205 0.87602 0.84368 0.83382 0.83576 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.46 11.46 21.86 0.25 -39.21 15 2 C 0.02 1.10 5.50 85.33 0.47 1.57 15 3 Si 0.98 37.12 29.56 68.60 2.03 39.15 15 4 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 5 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 6 H -0.27 -9.85 7.11 99.48 0.71 -9.15 15 7 C -0.44 -22.57 7.97 23.36 0.19 -22.39 15 8 H 0.11 5.12 5.26 -2.91 -0.02 5.11 15 9 C 0.25 13.22 6.56 40.37 0.26 13.49 15 10 N -0.51 -28.52 7.82 -179.32 -1.40 -29.92 15 11 C 0.20 9.71 7.28 85.01 0.62 10.33 15 12 Cl -0.08 -3.29 29.09 -2.72 -0.08 -3.37 15 13 C -0.30 -13.01 9.87 22.53 0.22 -12.79 15 14 C -0.03 -1.20 9.66 22.65 0.22 -0.98 15 15 C -0.24 -11.02 5.54 -19.50 -0.11 -11.13 15 16 C -0.01 -0.38 5.02 -20.04 -0.10 -0.48 15 17 C -0.13 -4.80 7.57 22.54 0.17 -4.62 15 18 C -0.13 -3.76 10.03 22.23 0.22 -3.54 15 19 C -0.14 -3.54 10.04 22.35 0.22 -3.32 15 20 C -0.12 -3.26 10.03 22.23 0.22 -3.03 15 21 C -0.14 -4.62 9.55 22.55 0.22 -4.41 15 22 H 0.28 13.60 8.29 -92.71 -0.77 12.83 15 23 H 0.13 4.95 8.06 -2.91 -0.02 4.93 15 24 H 0.14 4.88 8.06 -2.91 -0.02 4.86 15 25 H 0.11 4.36 7.27 -2.91 -0.02 4.34 15 26 H 0.14 3.37 8.06 -2.91 -0.02 3.34 15 27 H 0.15 2.74 8.06 -2.91 -0.02 2.72 15 28 H 0.15 2.96 8.06 -2.91 -0.02 2.93 15 29 H 0.12 3.81 8.05 -2.91 -0.02 3.79 15 Total: -1.00 -60.99 273.01 4.80 -56.19 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 1.17 Total: 18.46 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 2.83 Total: -41.29 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.15 Total: -69.13 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 17 Polarization: -3.29 SS G_CDS: -0.08 Total: -3.37 kcal Total: -60.99 4.80 -56.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380844392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.854 kcal (2) G-P(sol) polarization free energy of solvation -60.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds