Wall clock time and date at job start Mon Mar 30 2020 06:32:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86803 * 119.99930 * 2 1
4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1
5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1
6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1
7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2
11 11 O 1.42903 * 109.46726 * 179.97438 * 10 9 7
12 12 C 1.36028 * 116.99672 * 180.02562 * 11 10 9
13 13 C 1.38699 * 119.98147 * 359.97438 * 12 11 10
14 14 C 1.38251 * 120.01312 * 179.97438 * 13 12 11
15 15 F 1.35103 * 120.02232 * 180.02562 * 14 13 12
16 16 C 1.39068 * 119.96127 * 0.02562 * 14 13 12
17 17 N 1.40109 * 120.01820 * 179.97438 * 16 14 13
18 18 C 1.38740 * 119.95998 * 359.97438 * 16 14 13
19 19 C 1.38285 * 119.99019 * 359.73129 * 18 16 14
20 20 Cl 1.73605 * 119.98577 * 180.27229 * 19 18 16
21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3
22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2
23 23 H 1.08992 * 109.47158 * 299.99676 * 9 7 2
24 24 H 1.09002 * 109.47398 * 300.00078 * 10 9 7
25 25 H 1.09001 * 109.47194 * 60.00258 * 10 9 7
26 26 H 1.08010 * 119.99553 * 359.97438 * 13 12 11
27 27 H 0.96996 * 120.00266 * 359.97438 * 17 16 14
28 28 H 0.97003 * 119.99620 * 179.97438 * 17 16 14
29 29 H 1.07997 * 120.00986 * 180.02562 * 18 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4002
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2453 -3.6620 0.0005
11 8 1.5308 -4.8996 0.0011
12 6 2.2717 -6.0404 0.0018
13 6 3.6568 -5.9673 0.0012
14 6 4.4105 -7.1263 0.0024
15 9 5.7596 -7.0553 0.0024
16 6 3.7790 -8.3654 0.0036
17 7 4.5416 -9.5407 0.0042
18 6 2.3934 -8.4369 0.0041
19 6 1.6414 -7.2765 0.0091
20 17 -0.0923 -7.3661 0.0168
21 1 -0.4850 0.8400 -0.0004
22 1 0.6247 -2.5571 -0.8897
23 1 0.6241 -2.5568 0.8902
24 1 2.8720 -3.6043 -0.8894
25 1 2.8720 -3.6043 0.8905
26 1 4.1467 -5.0047 -0.0001
27 1 5.5103 -9.4904 0.0035
28 1 4.1008 -10.4048 0.0054
29 1 1.9022 -9.3987 0.0054
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000382374628.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:32:01
Heat of formation + Delta-G solvation = -76.222976 kcal
Electronic energy + Delta-G solvation = -16414.380690 eV
Core-core repulsion = 13277.724493 eV
Total energy + Delta-G solvation = -3136.656197 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 259.052 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-48.89350 -39.87588 -37.62823 -36.31737 -34.04359 -33.21566 -30.58222 -30.21018
-27.76114 -25.11394 -23.19087 -22.06511 -20.84310 -18.43126 -17.54164 -17.10620
-16.50158 -15.87105 -15.77493 -15.37892 -15.19966 -14.58741 -14.10068 -13.96297
-13.59136 -13.26046 -12.35011 -12.15807 -12.02776 -11.75346 -11.65862 -10.98124
-10.94743 -10.70725 -10.61147 -10.19040 -9.68442 -9.49587 -9.30468 -8.79526
-8.44308 -7.26154 -6.09872 -4.14683 0.94164 1.41150 2.26840 3.27885
3.33771 3.36385 3.50743 3.55704 3.74977 4.14752 4.40716 4.68426
5.03679 5.21691 5.26602 5.62330 5.68985 5.84043 5.90600 5.99656
6.16494 6.44687 6.64507 7.17775 7.46375 7.52234 7.64490 7.74679
7.98257 8.23246 8.90891 9.49668 11.01568
Molecular weight = 259.05amu
Principal moments of inertia in cm(-1)
A = 0.025540 B = 0.004838 C = 0.004080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1096.054277 B = 5786.021447 C = 6861.621569
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.061 3.939
3 Si 0.898 3.102
4 H -0.279 1.279
5 H -0.285 1.285
6 H -0.273 1.273
7 C -0.527 4.527
8 H 0.058 0.942
9 C 0.027 3.973
10 C 0.062 3.938
11 O -0.299 6.299
12 C 0.132 3.868
13 C -0.191 4.191
14 C 0.065 3.935
15 F -0.139 7.139
16 C 0.151 3.849
17 N -0.877 5.877
18 C -0.128 4.128
19 C -0.041 4.041
20 Cl -0.050 7.050
21 H 0.263 0.737
22 H 0.029 0.971
23 H 0.029 0.971
24 H 0.052 0.948
25 H 0.052 0.948
26 H 0.152 0.848
27 H 0.401 0.599
28 H 0.401 0.599
29 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.769 -18.583 0.015 19.778
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.141 4.141
3 Si 0.726 3.274
4 H -0.205 1.205
5 H -0.211 1.211
6 H -0.198 1.198
7 C -0.565 4.565
8 H 0.076 0.924
9 C -0.010 4.010
10 C -0.012 4.012
11 O -0.212 6.212
12 C 0.082 3.918
13 C -0.211 4.211
14 C 0.042 3.958
15 F -0.118 7.118
16 C 0.047 3.953
17 N -0.420 5.420
18 C -0.151 4.151
19 C -0.069 4.069
20 Cl -0.021 7.021
21 H 0.073 0.927
22 H 0.047 0.953
23 H 0.047 0.953
24 H 0.071 0.929
25 H 0.071 0.929
26 H 0.170 0.830
27 H 0.229 0.771
28 H 0.229 0.771
29 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 6.252 -18.354 0.021 19.390
hybrid contribution 1.006 0.714 -0.012 1.234
sum 7.258 -17.640 0.009 19.074
Atomic orbital electron populations
1.69974 1.06085 1.26974 1.49613 1.24982 0.94896 0.99355 0.94909
0.86496 0.79746 0.82980 0.78214 1.20506 1.21053 1.19768 1.20966
0.93037 0.90197 1.52339 0.92365 1.19112 0.94104 0.88779 0.99037
1.23423 0.97291 0.80721 0.99775 1.86313 1.35306 1.12588 1.86956
1.18339 0.88860 0.87277 0.97284 1.21073 0.92802 0.98981 1.08294
1.16852 0.76846 0.92392 1.09760 1.91446 1.28790 1.97049 1.94491
1.17325 0.90666 0.86064 1.01236 1.42172 1.08482 1.04616 1.86735
1.20039 0.90419 0.97548 1.07120 1.19888 0.85733 0.91617 1.09635
1.98370 1.08320 1.98537 1.96891 0.92697 0.95278 0.95255 0.92935
0.92941 0.83023 0.77076 0.77092 0.83898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 15
2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15
3 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 15
4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15
5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15
6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15
7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 15
8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15
9 C 0.03 0.69 5.34 -27.88 -0.15 0.55 15
10 C 0.06 1.29 4.68 37.16 0.17 1.46 15
11 O -0.30 -5.98 9.59 -19.83 -0.19 -6.17 15
12 C 0.13 2.23 6.68 -39.22 -0.26 1.96 15
13 C -0.19 -2.93 9.01 -39.41 -0.35 -3.28 15
14 C 0.07 0.90 7.31 -39.27 -0.29 0.61 15
15 F -0.14 -1.86 16.64 2.25 0.04 -1.82 15
16 C 0.15 1.77 6.76 -83.58 -0.57 1.20 15
17 N -0.88 -7.18 9.11 32.50 0.30 -6.88 15
18 C -0.13 -1.51 9.67 -39.38 -0.38 -1.89 15
19 C -0.04 -0.60 6.33 -39.37 -0.25 -0.85 15
20 Cl -0.05 -0.74 28.49 -51.86 -1.48 -2.22 15
21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15
22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15
23 H 0.03 0.81 8.14 -51.93 -0.42 0.38 15
24 H 0.05 1.04 7.66 -51.93 -0.40 0.64 15
25 H 0.05 1.04 7.66 -51.93 -0.40 0.64 15
26 H 0.15 2.28 6.29 -52.48 -0.33 1.95 15
27 H 0.40 2.94 8.32 -40.82 -0.34 2.60 15
28 H 0.40 2.27 8.85 -40.82 -0.36 1.91 15
29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 15
LS Contribution 277.49 15.07 4.18 4.18
Total: -1.00 -30.04 277.49 -6.56 -36.60
By element:
Atomic # 1 Polarization: 1.88 SS G_CDS: -2.64 Total: -0.76 kcal
Atomic # 6 Polarization: -11.02 SS G_CDS: -2.49 Total: -13.51 kcal
Atomic # 7 Polarization: -33.54 SS G_CDS: 1.03 Total: -32.51 kcal
Atomic # 8 Polarization: -5.98 SS G_CDS: -0.19 Total: -6.17 kcal
Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal
Atomic # 17 Polarization: -0.74 SS G_CDS: -1.48 Total: -2.22 kcal
Total LS contribution 4.18 Total: 4.18 kcal
Total: -30.04 -6.56 -36.60 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000382374628.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.622 kcal
(2) G-P(sol) polarization free energy of solvation -30.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.665 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds