Wall clock time and date at job start Mon Mar 30 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 179.97438 * 10 9 7 12 12 C 1.36028 * 116.99672 * 180.02562 * 11 10 9 13 13 C 1.38699 * 119.98147 * 359.97438 * 12 11 10 14 14 C 1.38251 * 120.01312 * 179.97438 * 13 12 11 15 15 F 1.35103 * 120.02232 * 180.02562 * 14 13 12 16 16 C 1.39068 * 119.96127 * 0.02562 * 14 13 12 17 17 N 1.40109 * 120.01820 * 179.97438 * 16 14 13 18 18 C 1.38740 * 119.95998 * 359.97438 * 16 14 13 19 19 C 1.38285 * 119.99019 * 359.73129 * 18 16 14 20 20 Cl 1.73605 * 119.98577 * 180.27229 * 19 18 16 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 26 26 H 1.08010 * 119.99553 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00266 * 359.97438 * 17 16 14 28 28 H 0.97003 * 119.99620 * 179.97438 * 17 16 14 29 29 H 1.07997 * 120.00986 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2717 -6.0404 0.0018 13 6 3.6568 -5.9673 0.0012 14 6 4.4105 -7.1263 0.0024 15 9 5.7596 -7.0553 0.0024 16 6 3.7790 -8.3654 0.0036 17 7 4.5416 -9.5407 0.0042 18 6 2.3934 -8.4369 0.0041 19 6 1.6414 -7.2765 0.0091 20 17 -0.0923 -7.3661 0.0168 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8902 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8905 26 1 4.1467 -5.0047 -0.0001 27 1 5.5103 -9.4904 0.0035 28 1 4.1008 -10.4048 0.0054 29 1 1.9022 -9.3987 0.0054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382374628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:01 Heat of formation + Delta-G solvation = -76.222976 kcal Electronic energy + Delta-G solvation = -16414.380690 eV Core-core repulsion = 13277.724493 eV Total energy + Delta-G solvation = -3136.656197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.89350 -39.87588 -37.62823 -36.31737 -34.04359 -33.21566 -30.58222 -30.21018 -27.76114 -25.11394 -23.19087 -22.06511 -20.84310 -18.43126 -17.54164 -17.10620 -16.50158 -15.87105 -15.77493 -15.37892 -15.19966 -14.58741 -14.10068 -13.96297 -13.59136 -13.26046 -12.35011 -12.15807 -12.02776 -11.75346 -11.65862 -10.98124 -10.94743 -10.70725 -10.61147 -10.19040 -9.68442 -9.49587 -9.30468 -8.79526 -8.44308 -7.26154 -6.09872 -4.14683 0.94164 1.41150 2.26840 3.27885 3.33771 3.36385 3.50743 3.55704 3.74977 4.14752 4.40716 4.68426 5.03679 5.21691 5.26602 5.62330 5.68985 5.84043 5.90600 5.99656 6.16494 6.44687 6.64507 7.17775 7.46375 7.52234 7.64490 7.74679 7.98257 8.23246 8.90891 9.49668 11.01568 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.004838 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.054277 B = 5786.021447 C = 6861.621569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.062 3.938 11 O -0.299 6.299 12 C 0.132 3.868 13 C -0.191 4.191 14 C 0.065 3.935 15 F -0.139 7.139 16 C 0.151 3.849 17 N -0.877 5.877 18 C -0.128 4.128 19 C -0.041 4.041 20 Cl -0.050 7.050 21 H 0.263 0.737 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.152 0.848 27 H 0.401 0.599 28 H 0.401 0.599 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 -18.583 0.015 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.012 4.012 11 O -0.212 6.212 12 C 0.082 3.918 13 C -0.211 4.211 14 C 0.042 3.958 15 F -0.118 7.118 16 C 0.047 3.953 17 N -0.420 5.420 18 C -0.151 4.151 19 C -0.069 4.069 20 Cl -0.021 7.021 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.170 0.830 27 H 0.229 0.771 28 H 0.229 0.771 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.252 -18.354 0.021 19.390 hybrid contribution 1.006 0.714 -0.012 1.234 sum 7.258 -17.640 0.009 19.074 Atomic orbital electron populations 1.69974 1.06085 1.26974 1.49613 1.24982 0.94896 0.99355 0.94909 0.86496 0.79746 0.82980 0.78214 1.20506 1.21053 1.19768 1.20966 0.93037 0.90197 1.52339 0.92365 1.19112 0.94104 0.88779 0.99037 1.23423 0.97291 0.80721 0.99775 1.86313 1.35306 1.12588 1.86956 1.18339 0.88860 0.87277 0.97284 1.21073 0.92802 0.98981 1.08294 1.16852 0.76846 0.92392 1.09760 1.91446 1.28790 1.97049 1.94491 1.17325 0.90666 0.86064 1.01236 1.42172 1.08482 1.04616 1.86735 1.20039 0.90419 0.97548 1.07120 1.19888 0.85733 0.91617 1.09635 1.98370 1.08320 1.98537 1.96891 0.92697 0.95278 0.95255 0.92935 0.92941 0.83023 0.77076 0.77092 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.69 5.34 -27.88 -0.15 0.55 15 10 C 0.06 1.29 4.68 37.16 0.17 1.46 15 11 O -0.30 -5.98 9.59 -19.83 -0.19 -6.17 15 12 C 0.13 2.23 6.68 -39.22 -0.26 1.96 15 13 C -0.19 -2.93 9.01 -39.41 -0.35 -3.28 15 14 C 0.07 0.90 7.31 -39.27 -0.29 0.61 15 15 F -0.14 -1.86 16.64 2.25 0.04 -1.82 15 16 C 0.15 1.77 6.76 -83.58 -0.57 1.20 15 17 N -0.88 -7.18 9.11 32.50 0.30 -6.88 15 18 C -0.13 -1.51 9.67 -39.38 -0.38 -1.89 15 19 C -0.04 -0.60 6.33 -39.37 -0.25 -0.85 15 20 Cl -0.05 -0.74 28.49 -51.86 -1.48 -2.22 15 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.03 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.05 1.04 7.66 -51.93 -0.40 0.64 15 25 H 0.05 1.04 7.66 -51.93 -0.40 0.64 15 26 H 0.15 2.28 6.29 -52.48 -0.33 1.95 15 27 H 0.40 2.94 8.32 -40.82 -0.34 2.60 15 28 H 0.40 2.27 8.85 -40.82 -0.36 1.91 15 29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 15 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -30.04 277.49 -6.56 -36.60 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -2.64 Total: -0.76 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.49 Total: -13.51 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 1.03 Total: -32.51 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.19 Total: -6.17 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.48 Total: -2.22 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.04 -6.56 -36.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382374628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.622 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds