Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 179.97438 * 10 9 7 12 12 C 1.36028 * 116.99672 * 180.02562 * 11 10 9 13 13 C 1.38699 * 119.98147 * 359.97438 * 12 11 10 14 14 C 1.38251 * 120.01312 * 179.97438 * 13 12 11 15 15 F 1.35103 * 120.02232 * 180.02562 * 14 13 12 16 16 C 1.39068 * 119.96127 * 0.02562 * 14 13 12 17 17 N 1.40109 * 120.01820 * 179.97438 * 16 14 13 18 18 C 1.38740 * 119.95998 * 359.97438 * 16 14 13 19 19 C 1.38285 * 119.99019 * 359.73129 * 18 16 14 20 20 Cl 1.73605 * 119.98577 * 180.27229 * 19 18 16 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 26 26 H 1.08010 * 119.99553 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00266 * 359.97438 * 17 16 14 28 28 H 0.97003 * 119.99620 * 179.97438 * 17 16 14 29 29 H 1.07997 * 120.00986 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2717 -6.0404 0.0018 13 6 3.6568 -5.9673 0.0012 14 6 4.4105 -7.1263 0.0024 15 9 5.7596 -7.0553 0.0024 16 6 3.7790 -8.3654 0.0036 17 7 4.5416 -9.5407 0.0042 18 6 2.3934 -8.4369 0.0041 19 6 1.6414 -7.2765 0.0091 20 17 -0.0923 -7.3661 0.0168 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8902 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8905 26 1 4.1467 -5.0047 -0.0001 27 1 5.5103 -9.4904 0.0035 28 1 4.1008 -10.4048 0.0054 29 1 1.9022 -9.3987 0.0054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382374628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -95.468683 kcal Electronic energy + Delta-G solvation = -16415.215246 eV Core-core repulsion = 13277.724493 eV Total energy + Delta-G solvation = -3137.490753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.94297 -41.10248 -38.87883 -37.45510 -35.57811 -34.76837 -32.27588 -31.50481 -28.93005 -26.93494 -24.55463 -23.21289 -22.54948 -19.72768 -18.57500 -18.43059 -18.03857 -17.18921 -17.14266 -16.57234 -16.53085 -16.27394 -15.28597 -15.07238 -14.79439 -14.58371 -14.29550 -13.67217 -13.54777 -12.91015 -12.84608 -12.72817 -12.65156 -12.43957 -11.89025 -11.83200 -11.60313 -11.39120 -10.76933 -10.57988 -9.86336 -8.29384 -8.24690 -6.37999 -0.14143 0.30414 1.13171 1.41967 1.43905 1.54955 2.21779 2.41155 2.47271 2.84638 3.09896 3.09990 3.60171 3.89812 4.16667 4.29534 4.29619 4.60136 4.61628 4.77110 4.83188 5.01357 5.33000 5.42926 5.51053 5.72156 6.08252 6.32972 6.45123 6.77021 6.91642 7.31939 8.88266 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.004838 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.054277 B = 5786.021447 C = 6861.621569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.031 3.969 10 C 0.081 3.919 11 O -0.322 6.322 12 C 0.094 3.906 13 C -0.193 4.193 14 C 0.053 3.947 15 F -0.137 7.137 16 C 0.172 3.828 17 N -0.857 5.857 18 C -0.119 4.119 19 C -0.043 4.043 20 Cl -0.056 7.056 21 H 0.266 0.734 22 H -0.001 1.001 23 H -0.001 1.001 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.148 0.852 27 H 0.409 0.591 28 H 0.417 0.583 29 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 -20.052 0.014 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.007 3.993 11 O -0.236 6.236 12 C 0.046 3.954 13 C -0.213 4.213 14 C 0.029 3.971 15 F -0.116 7.116 16 C 0.065 3.935 17 N -0.401 5.401 18 C -0.142 4.142 19 C -0.071 4.071 20 Cl -0.027 7.027 21 H 0.075 0.925 22 H 0.017 0.983 23 H 0.018 0.982 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.166 0.834 27 H 0.239 0.761 28 H 0.248 0.752 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.217 -19.893 0.019 21.523 hybrid contribution 0.443 0.956 -0.012 1.054 sum 8.660 -18.936 0.007 20.823 Atomic orbital electron populations 1.70119 1.08000 1.28148 1.50675 1.26012 0.95790 1.03587 0.94255 0.85319 0.78602 0.77739 0.78611 1.19616 1.20733 1.18357 1.21407 0.93825 0.91061 1.52003 0.91125 1.18928 0.94484 0.91155 0.96105 1.22934 0.95545 0.80180 1.00689 1.86215 1.36044 1.13048 1.88333 1.18529 0.89522 0.86660 1.00733 1.21042 0.92329 0.99673 1.08282 1.16876 0.76904 0.92686 1.10664 1.91450 1.28549 1.97073 1.94534 1.17375 0.90812 0.86504 0.98783 1.42211 1.08897 1.04243 1.84768 1.20322 0.90307 0.97842 1.05746 1.20117 0.85683 0.91849 1.09500 1.98367 1.08912 1.98520 1.96932 0.92499 0.98260 0.98237 0.91943 0.91973 0.83404 0.76148 0.75152 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 15 2 C 0.00 0.12 5.46 84.66 0.46 0.58 15 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 15 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 15 7 C -0.55 -30.65 9.11 25.60 0.23 -30.42 15 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 15 9 C 0.03 1.66 5.34 29.85 0.16 1.81 15 10 C 0.08 3.47 4.68 71.98 0.34 3.81 15 11 O -0.32 -13.30 9.59 -93.87 -0.90 -14.20 15 12 C 0.09 3.16 6.68 22.50 0.15 3.31 15 13 C -0.19 -5.80 9.01 22.38 0.20 -5.60 15 14 C 0.05 1.35 7.31 22.47 0.16 1.51 15 15 F -0.14 -3.39 16.64 44.97 0.75 -2.64 15 16 C 0.17 3.49 6.76 38.14 0.26 3.75 15 17 N -0.86 -10.58 9.11 -51.11 -0.47 -11.05 15 18 C -0.12 -2.47 9.67 22.40 0.22 -2.26 15 19 C -0.04 -1.24 6.33 22.40 0.14 -1.10 15 20 Cl -0.06 -1.64 28.49 -2.72 -0.08 -1.72 15 21 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 22 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 15 23 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 24 H 0.06 2.51 7.66 -2.39 -0.02 2.49 15 25 H 0.06 2.50 7.66 -2.39 -0.02 2.48 15 26 H 0.15 4.43 6.29 -2.91 -0.02 4.41 15 27 H 0.41 4.40 8.32 -92.71 -0.77 3.63 15 28 H 0.42 2.80 8.85 -92.71 -0.82 1.98 15 29 H 0.18 2.45 8.06 -2.91 -0.02 2.43 15 Total: -1.00 -66.15 277.49 3.56 -62.59 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -0.38 Total: 2.42 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 2.32 Total: -24.59 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -0.18 Total: -67.46 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.90 Total: -14.20 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.75 Total: -2.64 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -66.15 3.56 -62.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382374628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.877 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds