Wall clock time and date at job start Mon Mar 30 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99649 * 2 1 4 4 H 1.48491 * 109.47226 * 240.00048 * 3 2 1 5 5 H 1.48503 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46797 * 119.99804 * 3 2 1 7 7 C 1.37872 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99537 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46947 * 179.97438 * 11 10 9 13 13 S 1.81401 * 109.46754 * 179.97438 * 12 11 10 14 14 C 1.76204 * 103.00077 * 179.97438 * 13 12 11 15 15 N 1.28334 * 124.85678 * 0.02562 * 14 13 12 16 16 N 1.37797 * 116.35244 * 179.73554 * 15 14 13 17 17 H 0.97008 * 122.91963 * 179.97438 * 16 15 14 18 18 C 1.35366 * 114.16736 * 359.97438 * 16 15 14 19 19 N 1.31130 * 125.74551 * 180.02562 * 18 16 15 20 20 S 1.75876 * 124.85876 * 179.71715 * 14 13 12 21 21 H 0.97000 * 120.00431 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47212 * 59.99524 * 9 7 2 23 23 H 1.09003 * 109.46762 * 299.99849 * 9 7 2 24 24 H 1.08997 * 109.47585 * 59.99535 * 10 9 7 25 25 H 1.09008 * 109.47094 * 299.99947 * 10 9 7 26 26 H 1.08991 * 109.46938 * 59.99637 * 11 10 9 27 27 H 1.09003 * 109.46722 * 299.99632 * 11 10 9 28 28 H 1.08997 * 109.47749 * 59.99613 * 12 11 10 29 29 H 1.09003 * 109.47111 * 299.99396 * 12 11 10 30 30 H 0.97002 * 120.00243 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0033 12 6 2.4749 -6.1499 -0.0037 13 16 1.5679 -7.7209 -0.0051 14 6 2.8567 -8.9226 -0.0062 15 7 4.1113 -8.6526 -0.0054 16 7 4.9690 -9.7310 -0.0008 17 1 5.9345 -9.6367 -0.0002 18 6 4.3474 -10.9335 0.0029 19 7 4.9411 -12.1027 0.0081 20 16 2.6077 -10.6636 -0.0006 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6242 -2.5575 0.8881 24 1 2.8715 -3.6046 0.8890 25 1 2.8728 -3.6038 -0.8910 26 1 0.8549 -5.0442 -0.8939 27 1 0.8529 -5.0455 0.8860 28 1 3.1010 -6.0930 0.8867 29 1 3.1021 -6.0913 -0.8932 30 1 4.4117 -12.9155 0.0101 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385224744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:49 Heat of formation + Delta-G solvation = 29.901526 kcal Electronic energy + Delta-G solvation = -13813.952353 eV Core-core repulsion = 11282.447693 eV Total energy + Delta-G solvation = -2531.504659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93056 -36.87373 -35.88255 -34.65259 -32.10377 -31.26153 -27.12974 -26.01872 -24.00537 -23.23141 -21.76484 -20.62280 -18.42851 -18.23958 -17.69224 -17.19431 -16.76394 -16.50562 -16.37780 -15.54712 -14.54500 -14.50970 -13.94008 -13.75894 -13.41268 -13.33675 -12.86496 -12.46370 -12.38985 -12.31194 -11.91953 -11.61430 -11.39969 -11.30280 -11.26770 -11.02657 -10.78276 -10.51680 -9.39151 -8.75138 -8.17413 -6.27977 -0.55576 -0.06055 -0.02350 0.10349 0.83408 1.02285 1.42035 1.44362 1.52243 1.73200 2.43093 3.15981 3.50263 3.87640 3.95724 4.28022 4.40092 4.54513 4.77360 4.86713 5.12689 5.28896 5.30548 5.57169 5.81007 5.83716 5.90799 5.95008 6.28633 6.76169 6.89943 7.41241 8.94047 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.061212 B = 0.003006 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.314287 B = 9311.738163 C = 9737.995319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.021 3.979 10 C -0.092 4.092 11 C -0.097 4.097 12 C -0.099 4.099 13 S 0.036 5.964 14 C 0.040 3.960 15 N -0.236 5.236 16 N -0.511 5.511 17 H 0.456 0.544 18 C 0.367 3.633 19 N -0.720 5.720 20 S 0.039 5.961 21 H 0.263 0.737 22 H -0.006 1.006 23 H -0.006 1.006 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -21.446 -0.009 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.249 4.249 13 S 0.264 5.736 14 C -0.368 4.368 15 N -0.057 5.057 16 N -0.250 5.250 17 H 0.305 0.695 18 C -0.027 4.027 19 N -0.365 5.365 20 S 0.264 5.736 21 H 0.072 0.928 22 H 0.012 0.988 23 H 0.012 0.988 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.164 -21.897 -0.007 22.498 hybrid contribution 1.595 1.145 -0.001 1.963 sum 6.758 -20.752 -0.008 21.825 Atomic orbital electron populations 1.70080 1.07737 1.27769 1.51796 1.25957 0.95744 1.03271 0.94893 0.85557 0.78315 0.78367 0.79157 1.19218 1.20986 1.19229 1.21723 0.93612 0.92548 1.50327 0.92156 1.19036 0.94555 0.92966 0.95057 1.21408 0.97988 0.92570 1.01161 1.21300 0.97244 0.91863 1.03254 1.23774 1.01382 0.92236 1.07503 1.85944 1.02193 0.95182 1.90312 1.29195 0.98420 1.02687 1.06533 1.74237 1.00291 1.11753 1.19392 1.45632 1.09879 0.97532 1.71927 0.69498 1.25159 0.90775 0.91653 0.95158 1.69005 1.37488 0.98041 1.31993 1.86314 1.05789 0.97406 1.84110 0.92818 0.98792 0.98804 0.92545 0.92551 0.91068 0.91068 0.88135 0.88122 0.80858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 3 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.09 -3.41 5.15 30.59 0.16 -3.26 16 11 C -0.10 -2.80 5.22 30.60 0.16 -2.64 16 12 C -0.10 -2.27 5.51 71.98 0.40 -1.87 16 13 S 0.04 0.75 22.16 -56.49 -1.25 -0.50 16 14 C 0.04 0.83 7.73 130.75 1.01 1.84 16 15 N -0.24 -5.10 11.46 -56.24 -0.64 -5.74 16 16 N -0.51 -9.74 6.92 -57.79 -0.40 -10.14 16 17 H 0.46 6.92 8.96 -214.76 -1.93 4.99 16 18 C 0.37 7.08 8.82 179.98 1.59 8.66 16 19 N -0.72 -13.78 14.18 -57.74 -0.82 -14.60 16 20 S 0.04 0.70 23.36 -56.49 -1.32 -0.62 16 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 22 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.37 5.72 8.93 -92.71 -0.83 4.89 16 Total: -1.00 -62.91 293.28 0.45 -62.46 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -1.58 Total: 5.14 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.16 Total: -25.73 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.58 Total: -86.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.57 Total: -1.12 kcal Total: -62.91 0.45 -62.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385224744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.357 kcal (2) G-P(sol) polarization free energy of solvation -62.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds