Wall clock time and date at job start Mon Mar 30 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48498 * 109.47430 * 270.00303 * 3 2 1 5 5 H 1.48504 * 109.46908 * 30.00261 * 3 2 1 6 6 H 1.48497 * 109.47272 * 150.00015 * 3 2 1 7 7 C 1.37876 * 120.00699 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00405 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47024 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46756 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46963 * 180.02562 * 11 10 9 13 13 N 1.46491 * 109.47364 * 179.97438 * 12 11 10 14 14 C 1.40933 * 120.00306 * 179.97438 * 13 12 11 15 15 C 1.38773 * 122.61709 * 0.23758 * 14 13 12 16 16 C 1.33408 * 114.88439 * 180.29730 * 15 14 13 17 17 S 1.75851 * 109.70783 * 359.73891 * 16 15 14 18 18 C 1.33819 * 122.61745 * 180.02562 * 14 13 12 19 19 Cl 1.73599 * 125.20517 * 359.97438 * 18 14 13 20 20 H 0.96992 * 120.00074 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47299 * 59.99962 * 9 7 2 22 22 H 1.09001 * 109.47385 * 300.00292 * 9 7 2 23 23 H 1.08997 * 109.47123 * 60.00124 * 10 9 7 24 24 H 1.09003 * 109.46717 * 299.99545 * 10 9 7 25 25 H 1.08989 * 109.47530 * 59.99786 * 11 10 9 26 26 H 1.09003 * 109.46958 * 299.99180 * 11 10 9 27 27 H 1.09003 * 109.47222 * 59.99437 * 12 11 10 28 28 H 1.09001 * 109.46963 * 300.00072 * 12 11 10 29 29 H 0.97003 * 119.99978 * 359.97438 * 13 12 11 30 30 H 1.08003 * 122.55970 * 0.03894 * 15 14 13 31 31 H 1.08003 * 125.14698 * 179.76039 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0033 12 6 2.4749 -6.1499 -0.0024 13 7 1.7425 -7.4187 -0.0035 14 6 2.4472 -8.6391 -0.0035 15 6 3.8335 -8.7025 0.0024 16 6 4.3390 -9.9370 -0.0048 17 16 3.0318 -11.1132 -0.0123 18 6 1.8318 -9.8274 -0.0050 19 17 0.1119 -10.0637 -0.0066 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5563 -0.8920 22 1 0.6242 -2.5575 0.8880 23 1 2.8715 -3.6046 0.8890 24 1 2.8728 -3.6038 -0.8910 25 1 0.8549 -5.0441 -0.8939 26 1 0.8530 -5.0454 0.8861 27 1 3.1003 -6.0926 0.8885 28 1 3.1028 -6.0917 -0.8914 29 1 0.7725 -7.4187 -0.0043 30 1 4.4556 -7.8197 0.0079 31 1 5.3919 -10.1777 -0.0055 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387541188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:36 Heat of formation + Delta-G solvation = 6.008551 kcal Electronic energy + Delta-G solvation = -14098.343385 eV Core-core repulsion = 11531.466191 eV Total energy + Delta-G solvation = -2566.877194 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.96323 -36.56357 -35.70339 -33.61809 -31.98118 -29.52005 -27.56071 -24.52401 -23.76957 -21.78432 -20.20691 -19.19891 -18.05591 -16.80472 -16.13216 -15.35494 -14.84532 -14.42037 -14.07648 -13.93222 -13.73359 -12.92074 -12.87944 -12.55933 -11.77000 -11.68770 -11.66791 -11.21996 -11.18059 -10.79325 -10.76594 -10.59720 -10.48809 -9.89648 -9.71535 -9.34730 -9.07634 -8.70428 -8.36311 -7.39771 -6.01252 -4.03867 0.79579 1.18100 1.74918 2.32551 2.65643 3.30857 3.37142 3.40266 3.57977 4.44759 4.76889 5.09131 5.21041 5.32803 5.35325 5.49253 5.67482 5.77864 5.92785 6.04208 6.10829 6.34238 6.69021 6.82568 7.04060 7.19901 7.65183 7.67139 7.79916 7.98729 8.41026 9.03463 9.60394 11.10108 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.044744 B = 0.003138 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.637074 B = 8921.802137 C = 9516.382644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.129 4.129 12 C 0.125 3.875 13 N -0.733 5.733 14 C 0.216 3.784 15 C -0.157 4.157 16 C -0.178 4.178 17 S 0.129 5.871 18 C -0.261 4.261 19 Cl -0.027 7.027 20 H 0.260 0.740 21 H 0.015 0.985 22 H 0.015 0.985 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.403 0.597 30 H 0.150 0.850 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -22.150 -0.013 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.167 4.167 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.101 3.899 15 C -0.192 4.192 16 C -0.314 4.314 17 S 0.387 5.613 18 C -0.411 4.411 19 Cl 0.001 6.999 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.239 0.761 30 H 0.167 0.833 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.995 -23.424 -0.017 24.179 hybrid contribution -0.084 2.516 -0.005 2.517 sum 5.912 -20.908 -0.022 21.728 Atomic orbital electron populations 1.69961 1.06074 1.26611 1.50874 1.25035 0.94851 0.99293 0.95338 0.86598 0.79849 0.83476 0.78103 1.20662 1.21227 1.19864 1.21266 0.93041 0.91127 1.50555 0.92682 1.19097 0.93998 0.91326 0.97226 1.21557 0.99136 0.93246 1.00496 1.21861 0.98185 0.94398 1.02298 1.21544 0.95438 0.82101 1.00787 1.44897 1.08226 1.01580 1.81795 1.16714 0.91066 0.85965 0.96178 1.19740 0.92749 0.98884 1.07813 1.25528 1.03017 0.95807 1.07092 1.84077 0.93884 1.07399 1.75967 1.23902 0.89444 0.96323 1.31428 1.98312 1.07226 1.96487 1.97847 0.92996 0.96630 0.96621 0.93156 0.93171 0.91816 0.91824 0.92388 0.92381 0.76128 0.83292 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.08 5.15 -26.73 -0.14 -2.22 16 11 C -0.13 -2.06 5.33 -26.73 -0.14 -2.20 16 12 C 0.13 1.65 5.14 -4.04 -0.02 1.63 16 13 N -0.73 -9.41 5.78 -59.62 -0.34 -9.76 16 14 C 0.22 2.66 6.61 -85.02 -0.56 2.10 16 15 C -0.16 -1.65 9.46 -41.07 -0.39 -2.04 16 16 C -0.18 -1.55 11.22 29.04 0.33 -1.22 16 17 S 0.13 1.24 23.33 -107.50 -2.51 -1.27 16 18 C -0.26 -3.14 7.11 29.18 0.21 -2.93 16 19 Cl -0.03 -0.32 28.51 -51.86 -1.48 -1.79 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.02 8.14 -51.94 -0.42 0.60 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.40 5.15 7.80 -40.82 -0.32 4.83 16 30 H 0.15 1.39 7.39 -52.48 -0.39 1.01 16 31 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -29.98 295.74 -9.48 -39.45 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.05 Total: -1.39 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.27 Total: -20.03 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.39 Total: -36.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.51 Total: -1.27 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.48 Total: -1.79 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.98 -9.48 -39.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387541188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.463 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds