Wall clock time and date at job start Mon Mar 30 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48509 * 109.46592 * 239.99861 * 3 2 1 5 5 H 1.48495 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47158 * 120.00346 * 3 2 1 7 7 C 1.40143 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.40781 * 119.99602 * 359.97438 * 7 2 1 10 10 N 1.33700 * 119.92489 * 0.02562 * 9 7 2 11 11 C 1.31264 * 121.65027 * 179.97438 * 10 9 7 12 12 C 1.39222 * 121.30965 * 0.02562 * 11 10 9 13 13 Cl 1.73591 * 120.15223 * 179.97438 * 12 11 10 14 14 C 1.38546 * 119.69115 * 0.02562 * 12 11 10 15 15 C 1.39603 * 118.46846 * 359.97438 * 14 12 11 16 16 C 1.47829 * 120.63777 * 180.02562 * 15 14 12 17 17 C 1.39686 * 120.15045 * 129.70176 * 16 15 14 18 18 C 1.37917 * 119.84419 * 179.72104 * 17 16 15 19 19 C 1.38398 * 120.15191 * 0.55485 * 18 17 16 20 20 C 1.38414 * 120.30748 * 359.72068 * 19 18 17 21 21 C 1.37910 * 120.14932 * 359.97438 * 20 19 18 22 22 H 0.97000 * 119.99372 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.34379 * 179.72633 * 11 10 9 24 24 H 1.07995 * 120.76279 * 179.97438 * 14 12 11 25 25 H 1.07999 * 120.07523 * 359.97438 * 17 16 15 26 26 H 1.07998 * 119.92429 * 180.27856 * 18 17 16 27 27 H 1.08001 * 119.84735 * 179.74374 * 19 18 17 28 28 H 1.07994 * 119.92129 * 179.97438 * 20 19 18 29 29 H 1.08003 * 120.07297 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0948 1.6963 -1.2126 5 1 1.2761 2.7464 -0.0006 6 1 3.0948 1.6964 1.2125 7 6 2.0078 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0001 9 6 1.3038 -2.4328 0.0016 10 7 -0.0332 -2.4310 0.0016 11 6 -0.7235 -3.5474 0.0021 12 6 -0.0923 -4.7883 0.0032 13 17 -1.0349 -6.2461 0.0045 14 6 1.2916 -4.8543 0.0043 15 6 2.0147 -3.6602 0.0038 16 6 3.4930 -3.6747 0.0043 17 6 4.2024 -2.9106 -0.9252 18 6 5.5815 -2.9244 -0.9153 19 6 6.2624 -3.7016 0.0053 20 6 5.5657 -4.4656 0.9256 21 6 4.1866 -4.4564 0.9310 22 1 -0.4849 0.8401 0.0004 23 1 -1.8026 -3.5025 0.0066 24 1 1.7991 -5.8076 0.0056 25 1 3.6723 -2.3074 -1.6474 26 1 6.1313 -2.3306 -1.6305 27 1 7.3423 -3.7119 0.0060 28 1 6.1033 -5.0702 1.6409 29 1 3.6442 -5.0527 1.6499 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390053019.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:17 Heat of formation + Delta-G solvation = 39.784762 kcal Electronic energy + Delta-G solvation = -16137.673501 eV Core-core repulsion = 13436.817003 eV Total energy + Delta-G solvation = -2700.856499 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.03881 -37.67679 -35.45079 -33.80861 -32.25335 -30.61098 -30.02548 -28.46088 -25.84775 -22.97434 -22.11179 -21.25443 -20.23683 -17.77819 -16.46439 -15.90272 -15.15792 -14.72236 -14.55471 -14.02836 -13.76801 -12.91447 -12.79496 -12.64938 -12.31383 -12.08438 -11.65626 -11.47553 -11.25301 -10.93088 -10.83492 -10.54815 -10.44284 -10.27638 -10.04497 -9.45976 -8.77337 -8.34204 -8.03629 -7.84713 -7.45281 -6.69441 -4.75465 1.76414 1.99839 2.49678 2.81042 2.96316 2.98424 3.03669 3.37544 3.76615 4.40627 4.49822 5.42443 5.45132 5.52806 5.63113 5.73370 5.89226 6.02777 6.08478 6.16374 6.45721 6.56877 6.62177 6.77877 6.91077 7.04206 7.07801 7.13721 7.21212 7.43844 7.60964 7.70211 7.97434 8.33714 8.62023 9.77272 10.01210 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.010073 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.867043 B = 2778.996448 C = 4754.290070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.064 3.936 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.405 4.405 8 H 0.098 0.902 9 C 0.262 3.738 10 N -0.470 5.470 11 C 0.155 3.845 12 C -0.228 4.228 13 Cl -0.126 7.126 14 C -0.021 4.021 15 C -0.224 4.224 16 C 0.022 3.978 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.147 4.147 20 C -0.124 4.124 21 C -0.128 4.128 22 H 0.279 0.721 23 H 0.128 0.872 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -2.785 -0.202 6.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.164 4.164 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.434 4.434 8 H 0.116 0.884 9 C 0.139 3.861 10 N -0.181 5.181 11 C -0.016 4.016 12 C -0.259 4.259 13 Cl -0.098 7.098 14 C -0.045 4.045 15 C -0.229 4.229 16 C 0.021 3.979 17 C -0.126 4.126 18 C -0.143 4.143 19 C -0.165 4.165 20 C -0.142 4.142 21 C -0.147 4.147 22 H 0.091 0.909 23 H 0.146 0.854 24 H 0.126 0.874 25 H 0.145 0.855 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.937 -1.890 -0.202 5.290 hybrid contribution 0.643 -0.312 0.074 0.718 sum 5.580 -2.202 -0.129 6.000 Atomic orbital electron populations 1.70081 1.07411 1.28760 1.25657 1.26222 0.94991 1.01593 0.93562 0.86323 0.80206 0.79835 0.80387 1.18485 1.19906 1.18552 1.19902 0.95273 0.89130 1.39093 0.88400 1.18550 0.87885 0.91183 0.88440 1.68933 1.07158 1.24579 1.17464 1.22683 0.99375 0.86680 0.92819 1.21314 0.91611 0.86217 1.26761 1.98220 1.73941 1.39457 1.98228 1.20781 0.91564 0.96777 0.95381 1.19321 0.91188 0.93437 1.18996 1.18664 0.92256 0.93877 0.93087 1.21414 0.93408 0.99025 0.98758 1.20997 0.94447 0.99619 0.99191 1.20976 0.98928 0.99197 0.97393 1.20911 0.94206 0.99956 0.99100 1.21273 0.93804 1.00500 0.99076 0.90918 0.85418 0.87437 0.85499 0.86874 0.87223 0.87067 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.37 11.46 55.56 0.64 -16.73 15 2 C 0.06 1.52 5.50 -17.31 -0.10 1.43 15 3 Si 0.91 17.46 29.56 -169.99 -5.02 12.43 15 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.41 -10.00 7.97 -37.91 -0.30 -10.30 15 8 H 0.10 2.29 5.24 -52.49 -0.28 2.01 15 9 C 0.26 6.66 6.56 -84.72 -0.56 6.11 15 10 N -0.47 -12.22 7.85 -10.87 -0.09 -12.31 15 11 C 0.15 3.61 10.97 -17.43 -0.19 3.42 15 12 C -0.23 -4.96 6.36 -39.10 -0.25 -5.21 15 13 Cl -0.13 -2.37 28.97 -51.86 -1.50 -3.87 15 14 C -0.02 -0.45 9.46 -38.96 -0.37 -0.82 15 15 C -0.22 -5.16 5.53 -104.09 -0.58 -5.74 15 16 C 0.02 0.45 5.02 -104.90 -0.53 -0.08 15 17 C -0.11 -2.07 7.57 -39.16 -0.30 -2.37 15 18 C -0.12 -2.03 10.03 -39.64 -0.40 -2.43 15 19 C -0.15 -2.23 10.04 -39.46 -0.40 -2.63 15 20 C -0.12 -1.95 10.03 -39.64 -0.40 -2.35 15 21 C -0.13 -2.34 9.55 -39.16 -0.37 -2.71 15 22 H 0.28 6.27 8.29 -40.82 -0.34 5.94 15 23 H 0.13 2.71 8.06 -52.49 -0.42 2.29 15 24 H 0.11 2.13 8.06 -52.49 -0.42 1.71 15 25 H 0.13 2.51 7.26 -52.49 -0.38 2.12 15 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.11 1.44 8.06 -52.49 -0.42 1.02 15 29 H 0.11 1.98 8.05 -52.48 -0.42 1.55 15 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -26.26 272.88 -8.92 -35.18 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -2.33 Total: 4.87 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -4.73 Total: -23.68 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.55 Total: -29.04 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.02 Total: 12.43 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -1.50 Total: -3.87 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.26 -8.92 -35.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390053019.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.965 kcal (2) G-P(sol) polarization free energy of solvation -26.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds