Wall clock time and date at job start Mon Mar 30 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48509 * 109.46592 * 239.99861 * 3 2 1 5 5 H 1.48495 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47158 * 120.00346 * 3 2 1 7 7 C 1.40143 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.40781 * 119.99602 * 359.97438 * 7 2 1 10 10 N 1.33700 * 119.92489 * 0.02562 * 9 7 2 11 11 C 1.31264 * 121.65027 * 179.97438 * 10 9 7 12 12 C 1.39222 * 121.30965 * 0.02562 * 11 10 9 13 13 Cl 1.73591 * 120.15223 * 179.97438 * 12 11 10 14 14 C 1.38546 * 119.69115 * 0.02562 * 12 11 10 15 15 C 1.39603 * 118.46846 * 359.97438 * 14 12 11 16 16 C 1.47829 * 120.63777 * 180.02562 * 15 14 12 17 17 C 1.39686 * 120.15045 * 129.70176 * 16 15 14 18 18 C 1.37917 * 119.84419 * 179.72104 * 17 16 15 19 19 C 1.38398 * 120.15191 * 0.55485 * 18 17 16 20 20 C 1.38414 * 120.30748 * 359.72068 * 19 18 17 21 21 C 1.37910 * 120.14932 * 359.97438 * 20 19 18 22 22 H 0.97000 * 119.99372 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.34379 * 179.72633 * 11 10 9 24 24 H 1.07995 * 120.76279 * 179.97438 * 14 12 11 25 25 H 1.07999 * 120.07523 * 359.97438 * 17 16 15 26 26 H 1.07998 * 119.92429 * 180.27856 * 18 17 16 27 27 H 1.08001 * 119.84735 * 179.74374 * 19 18 17 28 28 H 1.07994 * 119.92129 * 179.97438 * 20 19 18 29 29 H 1.08003 * 120.07297 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0948 1.6963 -1.2126 5 1 1.2761 2.7464 -0.0006 6 1 3.0948 1.6964 1.2125 7 6 2.0078 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0001 9 6 1.3038 -2.4328 0.0016 10 7 -0.0332 -2.4310 0.0016 11 6 -0.7235 -3.5474 0.0021 12 6 -0.0923 -4.7883 0.0032 13 17 -1.0349 -6.2461 0.0045 14 6 1.2916 -4.8543 0.0043 15 6 2.0147 -3.6602 0.0038 16 6 3.4930 -3.6747 0.0043 17 6 4.2024 -2.9106 -0.9252 18 6 5.5815 -2.9244 -0.9153 19 6 6.2624 -3.7016 0.0053 20 6 5.5657 -4.4656 0.9256 21 6 4.1866 -4.4564 0.9310 22 1 -0.4849 0.8401 0.0004 23 1 -1.8026 -3.5025 0.0066 24 1 1.7991 -5.8076 0.0056 25 1 3.6723 -2.3074 -1.6474 26 1 6.1313 -2.3306 -1.6305 27 1 7.3423 -3.7119 0.0060 28 1 6.1033 -5.0702 1.6409 29 1 3.6442 -5.0527 1.6499 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390053019.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:16 Heat of formation + Delta-G solvation = 27.885901 kcal Electronic energy + Delta-G solvation = -16138.189475 eV Core-core repulsion = 13436.817003 eV Total energy + Delta-G solvation = -2701.372472 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63947 -39.19454 -37.10202 -35.56265 -33.83785 -32.21452 -31.51389 -30.02407 -27.61637 -24.56558 -23.67510 -22.79432 -21.76389 -19.55568 -17.90658 -17.58723 -16.66911 -16.41517 -16.11164 -15.46988 -15.26928 -14.49217 -14.35951 -14.12682 -13.92161 -13.50063 -13.29170 -13.07089 -12.88176 -12.49634 -12.45117 -12.00600 -11.90864 -11.78211 -11.62786 -11.16329 -10.42138 -9.75432 -9.67592 -9.59005 -9.06808 -8.43842 -6.56861 0.28445 0.66580 0.76291 1.14822 1.38719 1.50422 1.50899 1.66901 2.17292 2.70367 3.07196 3.75920 4.01123 4.17931 4.22772 4.27574 4.34340 4.44187 4.67751 4.77123 4.84738 5.01102 5.13926 5.26757 5.32610 5.43067 5.49351 5.70850 5.74217 5.91016 6.00977 6.15990 6.29705 6.56338 6.81134 7.97244 8.29983 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.010073 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.867043 B = 2778.996448 C = 4754.290070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.023 3.977 3 Si 0.981 3.019 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.431 4.431 8 H 0.103 0.897 9 C 0.231 3.769 10 N -0.505 5.505 11 C 0.135 3.865 12 C -0.225 4.225 13 Cl -0.097 7.097 14 C -0.030 4.030 15 C -0.225 4.225 16 C -0.012 4.012 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.137 4.137 22 H 0.285 0.715 23 H 0.140 0.860 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.141 0.859 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 -3.189 0.040 8.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.201 4.201 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.460 4.460 8 H 0.121 0.879 9 C 0.109 3.891 10 N -0.217 5.217 11 C -0.033 4.033 12 C -0.257 4.257 13 Cl -0.070 7.070 14 C -0.055 4.055 15 C -0.230 4.230 16 C -0.013 4.013 17 C -0.143 4.143 18 C -0.142 4.142 19 C -0.153 4.153 20 C -0.137 4.137 21 C -0.156 4.156 22 H 0.095 0.905 23 H 0.157 0.843 24 H 0.145 0.855 25 H 0.126 0.874 26 H 0.159 0.841 27 H 0.168 0.832 28 H 0.164 0.836 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.506 -2.331 0.036 7.860 hybrid contribution -0.106 -0.372 0.000 0.386 sum 7.400 -2.703 0.037 7.878 Atomic orbital electron populations 1.70171 1.08994 1.29887 1.27029 1.27100 0.95696 1.04758 0.92572 0.85260 0.78862 0.75378 0.80465 1.17669 1.19070 1.18304 1.20170 0.95668 0.89780 1.40419 0.87892 1.18996 0.88177 0.92676 0.89298 1.68855 1.07924 1.26073 1.18846 1.22929 0.99981 0.87004 0.93401 1.21371 0.92076 0.87001 1.25215 1.98219 1.73216 1.37429 1.98093 1.21025 0.91660 0.97318 0.95456 1.19658 0.93049 0.93021 1.17256 1.18712 0.91068 0.96275 0.95239 1.21365 0.94887 0.99282 0.98754 1.21323 0.93206 0.99730 0.99893 1.21461 1.00936 0.97188 0.95668 1.21310 0.93141 0.99746 0.99512 1.21389 0.95215 1.00255 0.98712 0.90452 0.84269 0.85547 0.87429 0.84144 0.83246 0.83632 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.15 11.46 21.86 0.25 -37.90 15 2 C 0.02 1.10 5.50 85.32 0.47 1.57 15 3 Si 0.98 36.13 29.56 68.60 2.03 38.16 15 4 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 5 H -0.27 -9.34 7.11 99.48 0.71 -8.64 15 6 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 7 C -0.43 -22.04 7.97 23.35 0.19 -21.86 15 8 H 0.10 4.96 5.24 -2.91 -0.02 4.95 15 9 C 0.23 12.27 6.56 40.37 0.26 12.54 15 10 N -0.50 -27.42 7.85 -188.32 -1.48 -28.90 15 11 C 0.14 6.51 10.97 85.01 0.93 7.44 15 12 C -0.22 -9.91 6.36 22.58 0.14 -9.77 15 13 Cl -0.10 -3.58 28.97 -2.72 -0.08 -3.66 15 14 C -0.03 -1.34 9.46 22.67 0.21 -1.12 15 15 C -0.22 -10.64 5.53 -19.52 -0.11 -10.74 15 16 C -0.01 -0.50 5.02 -20.04 -0.10 -0.60 15 17 C -0.12 -4.75 7.57 22.54 0.17 -4.58 15 18 C -0.12 -3.71 10.03 22.23 0.22 -3.48 15 19 C -0.13 -3.52 10.04 22.35 0.22 -3.29 15 20 C -0.12 -3.33 10.03 22.23 0.22 -3.11 15 21 C -0.14 -4.81 9.55 22.54 0.22 -4.60 15 22 H 0.28 13.23 8.29 -92.71 -0.77 12.46 15 23 H 0.14 6.11 8.06 -2.91 -0.02 6.09 15 24 H 0.13 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.11 4.41 7.26 -2.91 -0.02 4.39 15 26 H 0.14 3.37 8.06 -2.91 -0.02 3.35 15 27 H 0.15 2.77 8.06 -2.91 -0.02 2.74 15 28 H 0.15 3.06 8.06 -2.91 -0.02 3.03 15 29 H 0.12 3.89 8.05 -2.91 -0.02 3.87 15 Total: -1.00 -58.50 272.88 4.96 -53.55 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.17 Total: 20.36 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 3.06 Total: -41.60 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -1.23 Total: -66.80 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.08 Total: -3.66 kcal Total: -58.50 4.96 -53.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390053019.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.432 kcal (2) G-P(sol) polarization free energy of solvation -58.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds