Wall clock time and date at job start Mon Mar 30 2020 06:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48508 * 109.47200 * 270.00203 * 3 2 1 5 5 H 1.48502 * 109.47116 * 29.99907 * 3 2 1 6 6 H 1.48497 * 109.47508 * 150.00350 * 3 2 1 7 7 C 1.40031 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99930 * 194.76925 * 7 2 1 9 9 C 1.40986 * 119.99460 * 14.76734 * 7 2 1 10 10 C 1.41277 * 120.56604 * 24.72603 * 9 7 2 11 11 C 1.36607 * 118.43037 * 180.28552 * 10 9 7 12 12 C 1.39897 * 119.50465 * 359.72772 * 11 10 9 13 13 C 1.47964 * 119.43901 * 179.97438 * 12 11 10 14 14 C 1.39605 * 120.14747 * 359.74183 * 13 12 11 15 15 C 1.37938 * 119.85523 * 179.74157 * 14 13 12 16 16 C 1.38391 * 120.14348 * 0.51834 * 15 14 13 17 17 C 1.38394 * 120.29183 * 359.76154 * 16 15 14 18 18 C 1.37937 * 120.14729 * 359.97438 * 17 16 15 19 19 N 1.33019 * 121.12118 * 359.97438 * 12 11 10 20 20 C 1.31394 * 121.70355 * 0.02562 * 19 12 11 21 21 Cl 1.73596 * 119.81754 * 179.97438 * 20 19 12 22 22 H 0.96997 * 120.00099 * 4.97694 * 1 2 3 23 23 H 1.07999 * 120.78746 * 0.02562 * 10 9 7 24 24 H 1.08000 * 120.24861 * 179.70606 * 11 10 9 25 25 H 1.08004 * 120.07284 * 0.02562 * 14 13 12 26 26 H 1.07995 * 119.92728 * 180.25601 * 15 14 13 27 27 H 1.07991 * 119.85327 * 179.73747 * 16 15 14 28 28 H 1.08000 * 119.92626 * 179.97438 * 17 16 15 29 29 H 1.07998 * 120.07445 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4894 2.0465 -1.4001 5 1 1.4394 2.6527 0.7000 6 1 3.5395 1.4403 0.6999 7 6 2.0082 -1.2127 -0.0005 8 1 3.0614 -1.2281 0.2379 9 6 1.3381 -2.4133 -0.3123 10 6 0.1679 -2.3984 -1.1037 11 6 -0.4495 -3.5866 -1.3742 12 6 0.0912 -4.7744 -0.8703 13 6 -0.5791 -6.0604 -1.1637 14 6 -1.7440 -6.0846 -1.9326 15 6 -2.3610 -7.2874 -2.2068 16 6 -1.8335 -8.4676 -1.7127 17 6 -0.6822 -8.4501 -0.9450 18 6 -0.0524 -7.2546 -0.6679 19 7 1.1976 -4.7672 -0.1319 20 6 1.8284 -3.6511 0.1561 21 17 3.2683 -3.6986 1.1246 22 1 -0.4850 0.8368 -0.0729 23 1 -0.2315 -1.4692 -1.4824 24 1 -1.3485 -3.6088 -1.9722 25 1 -2.1588 -5.1639 -2.3156 26 1 -3.2599 -7.3078 -2.8050 27 1 -2.3227 -9.4062 -1.9268 28 1 -0.2759 -9.3746 -0.5620 29 1 0.8463 -7.2424 -0.0690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390103905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:02 Heat of formation + Delta-G solvation = 31.681277 kcal Electronic energy + Delta-G solvation = -15783.315715 eV Core-core repulsion = 13082.107822 eV Total energy + Delta-G solvation = -2701.207892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.11675 -37.83451 -35.25535 -34.49599 -31.58736 -31.13201 -30.21140 -29.01461 -25.64508 -22.81407 -22.61331 -20.91133 -20.51864 -17.70704 -16.85944 -15.75968 -15.47384 -15.10959 -14.19399 -13.88461 -13.76351 -13.27282 -13.05925 -12.80745 -12.26502 -12.17688 -11.89670 -11.61193 -11.35684 -10.85071 -10.63509 -10.58390 -10.56176 -10.28207 -9.83694 -9.67305 -8.72168 -8.48046 -8.41379 -8.34551 -7.43297 -7.10938 -4.71774 1.49962 1.90492 2.48677 2.73239 2.89118 2.93587 3.04160 3.26144 3.65811 4.14150 4.55520 5.30483 5.34499 5.36381 5.38020 5.61690 5.89337 6.02989 6.10241 6.33590 6.43388 6.50751 6.62150 6.72939 6.74877 6.92370 6.97984 7.20302 7.37244 7.46289 7.59206 7.66815 8.09517 8.30468 8.35179 9.19286 9.72024 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.005732 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.145973 B = 4883.930967 C = 5742.809616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.413 4.413 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.134 4.134 11 C -0.121 4.121 12 C 0.010 3.990 13 C 0.017 3.983 14 C -0.133 4.133 15 C -0.119 4.119 16 C -0.150 4.150 17 C -0.121 4.121 18 C -0.112 4.112 19 N -0.440 5.440 20 C 0.063 3.937 21 Cl -0.080 7.080 22 H 0.290 0.710 23 H 0.137 0.863 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -4.098 -2.710 5.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.151 4.151 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.440 4.440 8 H 0.114 0.886 9 C 0.077 3.923 10 C -0.159 4.159 11 C -0.141 4.141 12 C -0.125 4.125 13 C 0.016 3.984 14 C -0.152 4.152 15 C -0.137 4.137 16 C -0.169 4.169 17 C -0.139 4.139 18 C -0.131 4.131 19 N -0.149 5.149 20 C -0.108 4.108 21 Cl -0.052 7.052 22 H 0.102 0.898 23 H 0.155 0.845 24 H 0.127 0.873 25 H 0.138 0.862 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.797 -4.696 -2.229 5.500 hybrid contribution 0.043 1.494 -0.183 1.506 sum -1.754 -3.202 -2.413 4.376 Atomic orbital electron populations 1.69752 1.07899 1.30785 1.30886 1.26139 0.94924 1.02200 0.91835 0.86094 0.80641 0.79270 0.79816 1.18768 1.19824 1.17895 1.19869 0.97850 0.90314 1.35985 0.88574 1.18205 0.92305 0.91745 0.90002 1.21344 0.97488 0.97389 0.99643 1.21370 0.99447 0.93141 1.00177 1.18561 0.95780 0.91360 1.06803 1.18643 0.93082 0.91961 0.94688 1.21181 0.95970 0.97871 1.00144 1.20906 0.99730 0.92590 1.00448 1.20991 0.97515 0.97612 1.00738 1.21019 0.96101 0.97620 0.99157 1.21295 1.00400 0.91362 1.00023 1.66083 1.06889 1.30762 1.11149 1.21309 0.94248 0.90074 1.05155 1.98240 1.37690 1.98639 1.70678 0.89831 0.84539 0.87287 0.86158 0.86780 0.87092 0.86839 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.74 10.81 55.55 0.60 -17.14 15 2 C 0.07 1.59 5.22 -17.32 -0.09 1.50 15 3 Si 0.92 16.82 29.59 -169.99 -5.03 11.79 15 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 7 C -0.41 -9.97 8.55 -37.87 -0.32 -10.30 15 8 H 0.10 2.26 7.09 -52.49 -0.37 1.89 15 9 C 0.08 2.10 5.60 -106.60 -0.60 1.50 15 10 C -0.13 -3.21 8.73 -39.02 -0.34 -3.55 15 11 C -0.12 -2.69 9.38 -39.55 -0.37 -3.07 15 12 C 0.01 0.23 6.74 -82.75 -0.56 -0.32 15 13 C 0.02 0.34 5.88 -104.89 -0.62 -0.27 15 14 C -0.13 -2.29 9.42 -39.18 -0.37 -2.66 15 15 C -0.12 -1.76 10.03 -39.64 -0.40 -2.16 15 16 C -0.15 -2.16 10.04 -39.47 -0.40 -2.56 15 17 C -0.12 -1.89 10.03 -39.63 -0.40 -2.28 15 18 C -0.11 -2.09 9.57 -39.18 -0.38 -2.47 15 19 N -0.44 -10.75 9.37 -6.25 -0.06 -10.81 15 20 C 0.06 1.57 7.35 -16.64 -0.12 1.44 15 21 Cl -0.08 -1.77 27.75 -51.86 -1.44 -3.21 15 22 H 0.29 5.98 8.30 -40.82 -0.34 5.64 15 23 H 0.14 3.24 6.15 -52.49 -0.32 2.92 15 24 H 0.11 2.09 6.15 -52.49 -0.32 1.77 15 25 H 0.12 1.91 6.15 -52.48 -0.32 1.59 15 26 H 0.11 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.11 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 29 H 0.13 2.47 7.52 -52.49 -0.39 2.08 15 LS Contribution 270.92 15.07 4.08 4.08 Total: -1.00 -25.93 270.92 -8.94 -34.87 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -2.14 Total: 5.61 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -4.95 Total: -25.19 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.54 Total: -27.95 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.44 Total: -3.21 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.93 -8.94 -34.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390103905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.548 kcal (2) G-P(sol) polarization free energy of solvation -25.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds