Wall clock time and date at job start Mon Mar 30 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.71006 * 125.45698 * 2 1 4 4 C 1.75991 * 90.63407 * 179.97438 * 3 2 1 5 5 C 1.39866 * 125.29672 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00124 * 179.97438 * 5 4 3 7 7 C 1.40179 * 119.99892 * 359.97438 * 5 4 3 8 8 N 1.30725 * 120.00337 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47417 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47137 * 120.00084 * 9 7 5 12 12 H 1.48504 * 109.47020 * 239.99883 * 9 7 5 13 13 N 1.31589 * 109.40791 * 0.02562 * 4 3 2 14 14 C 1.31241 * 115.82085 * 359.97438 * 13 4 3 15 15 C 1.48208 * 122.46982 * 179.97438 * 14 13 4 16 16 C 1.39488 * 120.13471 * 131.54970 * 15 14 13 17 17 C 1.37955 * 119.87109 * 179.97438 * 16 15 14 18 18 C 1.38382 * 120.12838 * 0.02562 * 17 16 15 19 19 C 1.38333 * 120.26946 * 359.97438 * 18 17 16 20 20 C 1.38006 * 120.12924 * 359.78821 * 19 18 17 21 21 C 1.50702 * 120.06572 * 180.25709 * 20 19 18 22 22 H 1.08990 * 109.47252 * 5.02205 * 1 2 3 23 23 H 1.08999 * 109.46455 * 125.02236 * 1 2 3 24 24 H 1.08997 * 109.47276 * 245.01864 * 1 2 3 25 25 H 0.96997 * 120.00408 * 179.97438 * 8 7 5 26 26 H 1.08000 * 120.06482 * 359.95460 * 16 15 14 27 27 H 1.07997 * 119.93879 * 179.97438 * 17 16 15 28 28 H 1.08005 * 119.86358 * 179.97438 * 18 17 16 29 29 H 1.07995 * 119.93725 * 180.02562 * 19 18 17 30 30 H 1.09002 * 109.46693 * 264.87454 * 21 20 19 31 31 H 1.09004 * 109.46927 * 24.86688 * 21 20 19 32 32 H 1.08997 * 109.47024 * 144.87235 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4990 1.3929 0.0000 4 6 3.9437 0.3880 0.0008 5 6 5.2590 0.8636 0.0017 6 1 6.0849 0.1676 0.0025 7 6 5.5053 2.2436 0.0014 8 7 4.5057 3.0860 -0.0001 9 14 7.2620 2.8788 0.0018 10 1 8.2036 1.7306 0.0031 11 1 7.4898 3.7052 -1.2108 12 1 7.4890 3.7057 1.2142 13 7 3.5939 -0.8806 0.0004 14 6 2.3031 -1.1176 0.0001 15 6 1.7464 -2.4912 -0.0008 16 6 0.7417 -2.8402 0.9016 17 6 0.2270 -4.1201 0.8956 18 6 0.7059 -5.0572 -0.0031 19 6 1.7022 -4.7170 -0.9005 20 6 2.2214 -3.4384 -0.9073 21 6 3.3027 -3.0678 -1.8894 22 1 -0.3633 1.0236 -0.0900 23 1 -0.3632 -0.5898 -0.8416 24 1 -0.3633 -0.4340 0.9315 25 1 4.6761 4.0409 0.0001 26 1 0.3677 -2.1100 1.6039 27 1 -0.5506 -4.3917 1.5942 28 1 0.3002 -6.0581 -0.0037 29 1 2.0717 -5.4524 -1.5998 30 1 4.2778 -3.1791 -1.4153 31 1 3.2443 -3.7232 -2.7584 32 1 3.1679 -2.0332 -2.2048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390236154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:35 Heat of formation + Delta-G solvation = 27.612486 kcal Electronic energy + Delta-G solvation = -16428.261133 eV Core-core repulsion = 13864.753605 eV Total energy + Delta-G solvation = -2563.507527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.10916 -37.07785 -34.23808 -32.22164 -31.64486 -29.78882 -27.98372 -26.41066 -24.31775 -22.58078 -21.31944 -20.83553 -18.38048 -17.27864 -15.96208 -15.53256 -15.00014 -14.73158 -14.49867 -13.61444 -13.12420 -12.90828 -12.68311 -12.56905 -12.17783 -11.96569 -11.80387 -11.62187 -11.54637 -11.43050 -11.25426 -10.76918 -10.58094 -10.49435 -10.34324 -9.66066 -9.33412 -8.41842 -8.15993 -7.73890 -7.66915 -7.09679 -6.99134 -4.72123 1.72500 1.88818 2.50573 2.92031 2.99416 2.99913 3.45204 3.67179 3.96581 3.98323 4.39747 5.09534 5.31641 5.39233 5.42970 5.54911 5.80331 5.99313 6.17898 6.23933 6.32320 6.37518 6.38170 6.45734 6.51688 6.75372 6.81214 6.85104 6.87692 6.92384 7.14145 7.32507 7.53567 7.59516 7.88517 8.29993 8.38761 9.70393 9.79832 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.006198 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.630729 B = 4516.459760 C = 5138.364256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.420 4.420 3 S 0.123 5.877 4 C 0.201 3.799 5 C -0.374 4.374 6 H 0.103 0.897 7 C 0.055 3.945 8 N -0.782 5.782 9 Si 0.940 3.060 10 H -0.256 1.256 11 H -0.269 1.269 12 H -0.269 1.269 13 N -0.581 5.581 14 C 0.134 3.866 15 C 0.014 3.986 16 C -0.106 4.106 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.064 4.064 21 C -0.099 4.099 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.298 0.702 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 -5.036 -0.758 6.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.546 4.546 3 S 0.384 5.616 4 C -0.053 4.053 5 C -0.417 4.417 6 H 0.121 0.879 7 C -0.167 4.167 8 N -0.412 5.412 9 Si 0.764 3.236 10 H -0.179 1.179 11 H -0.194 1.194 12 H -0.194 1.194 13 N -0.302 5.302 14 C -0.006 4.006 15 C 0.011 3.989 16 C -0.126 4.126 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.065 4.065 21 C -0.155 4.155 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.184 -4.036 -0.765 5.198 hybrid contribution 0.207 -0.534 0.087 0.579 sum -2.977 -4.570 -0.679 5.496 Atomic orbital electron populations 1.19669 0.90428 0.99752 0.99595 1.25382 1.00225 1.00004 1.29011 1.84212 0.97890 1.06880 1.72640 1.23770 0.96697 0.88655 0.96184 1.19000 0.91289 0.91838 1.39523 0.87913 1.26154 1.01215 0.96502 0.92837 1.68758 1.33213 1.05221 1.33985 0.85686 0.79664 0.79443 0.78849 1.17926 1.19405 1.19417 1.67410 1.13781 1.17468 1.31544 1.18538 0.88944 0.90883 1.02195 1.18374 0.94377 0.91671 0.94441 1.21203 0.96730 0.96093 0.98530 1.20916 1.00844 0.93646 0.99730 1.20994 0.98204 0.98928 0.96961 1.20885 0.98084 0.95750 0.99973 1.20048 0.96984 0.92744 0.96733 1.20650 0.97234 1.01751 0.95910 0.93696 0.93817 0.93782 0.88934 0.86218 0.86730 0.86897 0.86687 0.90659 0.93389 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.71 9.15 36.00 0.33 -0.38 16 2 C -0.42 -10.06 6.40 -34.68 -0.22 -10.28 16 3 S 0.12 3.10 20.09 -107.50 -2.16 0.94 16 4 C 0.20 5.40 7.11 -17.05 -0.12 5.28 16 5 C -0.37 -9.55 9.44 -38.24 -0.36 -9.92 16 6 H 0.10 2.55 7.85 -52.49 -0.41 2.14 16 7 C 0.05 1.27 5.50 -17.29 -0.10 1.18 16 8 N -0.78 -18.56 10.64 55.56 0.59 -17.97 16 9 Si 0.94 17.32 29.56 -169.99 -5.03 12.29 16 10 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 11 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 12 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 13 N -0.58 -15.43 9.39 -9.50 -0.09 -15.52 16 14 C 0.13 3.30 5.30 -84.39 -0.45 2.85 16 15 C 0.01 0.30 5.50 -104.89 -0.58 -0.28 16 16 C -0.11 -1.99 8.72 -39.22 -0.34 -2.33 16 17 C -0.13 -2.09 10.03 -39.63 -0.40 -2.49 16 18 C -0.13 -1.98 10.04 -39.49 -0.40 -2.38 16 19 C -0.13 -2.10 9.67 -39.63 -0.38 -2.49 16 20 C -0.06 -1.25 5.91 -104.26 -0.62 -1.87 16 21 C -0.10 -1.88 8.86 36.01 0.32 -1.56 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.80 6.57 -51.93 -0.34 0.46 16 25 H 0.30 6.30 8.29 -40.82 -0.34 5.96 16 26 H 0.12 2.18 6.56 -52.49 -0.34 1.84 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 32 H 0.07 1.51 7.03 -51.93 -0.37 1.14 16 LS Contribution 285.58 15.07 4.30 4.30 Total: -1.00 -27.73 285.58 -9.24 -36.97 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.55 Total: 3.66 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -3.31 Total: -24.67 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.50 Total: -33.49 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.16 Total: 0.94 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.73 -9.24 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390236154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.581 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds