Wall clock time and date at job start Mon Mar 30 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.71006 * 125.45698 * 2 1 4 4 C 1.75991 * 90.63407 * 179.97438 * 3 2 1 5 5 C 1.39866 * 125.29672 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00124 * 179.97438 * 5 4 3 7 7 C 1.40179 * 119.99892 * 359.97438 * 5 4 3 8 8 N 1.30725 * 120.00337 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47417 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47137 * 120.00084 * 9 7 5 12 12 H 1.48504 * 109.47020 * 239.99883 * 9 7 5 13 13 N 1.31589 * 109.40791 * 0.02562 * 4 3 2 14 14 C 1.31241 * 115.82085 * 359.97438 * 13 4 3 15 15 C 1.48208 * 122.46982 * 179.97438 * 14 13 4 16 16 C 1.39488 * 120.13471 * 131.54970 * 15 14 13 17 17 C 1.37955 * 119.87109 * 179.97438 * 16 15 14 18 18 C 1.38382 * 120.12838 * 0.02562 * 17 16 15 19 19 C 1.38333 * 120.26946 * 359.97438 * 18 17 16 20 20 C 1.38006 * 120.12924 * 359.78821 * 19 18 17 21 21 C 1.50702 * 120.06572 * 180.25709 * 20 19 18 22 22 H 1.08990 * 109.47252 * 5.02205 * 1 2 3 23 23 H 1.08999 * 109.46455 * 125.02236 * 1 2 3 24 24 H 1.08997 * 109.47276 * 245.01864 * 1 2 3 25 25 H 0.96997 * 120.00408 * 179.97438 * 8 7 5 26 26 H 1.08000 * 120.06482 * 359.95460 * 16 15 14 27 27 H 1.07997 * 119.93879 * 179.97438 * 17 16 15 28 28 H 1.08005 * 119.86358 * 179.97438 * 18 17 16 29 29 H 1.07995 * 119.93725 * 180.02562 * 19 18 17 30 30 H 1.09002 * 109.46693 * 264.87454 * 21 20 19 31 31 H 1.09004 * 109.46927 * 24.86688 * 21 20 19 32 32 H 1.08997 * 109.47024 * 144.87235 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4990 1.3929 0.0000 4 6 3.9437 0.3880 0.0008 5 6 5.2590 0.8636 0.0017 6 1 6.0849 0.1676 0.0025 7 6 5.5053 2.2436 0.0014 8 7 4.5057 3.0860 -0.0001 9 14 7.2620 2.8788 0.0018 10 1 8.2036 1.7306 0.0031 11 1 7.4898 3.7052 -1.2108 12 1 7.4890 3.7057 1.2142 13 7 3.5939 -0.8806 0.0004 14 6 2.3031 -1.1176 0.0001 15 6 1.7464 -2.4912 -0.0008 16 6 0.7417 -2.8402 0.9016 17 6 0.2270 -4.1201 0.8956 18 6 0.7059 -5.0572 -0.0031 19 6 1.7022 -4.7170 -0.9005 20 6 2.2214 -3.4384 -0.9073 21 6 3.3027 -3.0678 -1.8894 22 1 -0.3633 1.0236 -0.0900 23 1 -0.3632 -0.5898 -0.8416 24 1 -0.3633 -0.4340 0.9315 25 1 4.6761 4.0409 0.0001 26 1 0.3677 -2.1100 1.6039 27 1 -0.5506 -4.3917 1.5942 28 1 0.3002 -6.0581 -0.0037 29 1 2.0717 -5.4524 -1.5998 30 1 4.2778 -3.1791 -1.4153 31 1 3.2443 -3.7232 -2.7584 32 1 3.1679 -2.0332 -2.2048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390236154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:34 Heat of formation + Delta-G solvation = 13.307763 kcal Electronic energy + Delta-G solvation = -16428.881432 eV Core-core repulsion = 13864.753605 eV Total energy + Delta-G solvation = -2564.127827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61225 -38.77550 -36.06135 -33.62653 -33.30793 -31.26485 -29.81918 -27.86832 -26.00913 -24.26261 -22.92072 -22.26851 -20.03605 -19.18028 -17.68231 -16.98684 -16.69475 -16.17378 -15.95836 -15.20159 -14.72892 -14.41750 -14.23886 -13.99692 -13.92253 -13.56248 -13.54187 -13.24039 -13.06825 -12.90939 -12.74911 -12.32034 -12.14785 -11.99188 -11.86267 -11.34398 -11.11389 -9.90062 -9.69613 -9.59361 -9.52301 -8.89271 -8.79696 -6.64738 0.25556 0.55405 0.77077 1.38467 1.48353 1.52607 1.57867 2.01283 2.18758 2.27558 2.93392 3.23036 3.91230 4.06298 4.10080 4.25054 4.47777 4.60044 4.65771 4.72098 4.79795 4.82289 4.86911 4.96867 4.99059 5.07232 5.19635 5.31327 5.41408 5.60087 5.63605 5.76863 5.87976 5.99270 6.20050 6.41995 6.49112 7.81445 8.03047 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.006198 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.630729 B = 4516.459760 C = 5138.364256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.437 4.437 3 S 0.099 5.901 4 C 0.169 3.831 5 C -0.403 4.403 6 H 0.098 0.902 7 C 0.021 3.979 8 N -0.802 5.802 9 Si 1.017 2.983 10 H -0.256 1.256 11 H -0.257 1.257 12 H -0.257 1.257 13 N -0.608 5.608 14 C 0.123 3.877 15 C -0.027 4.027 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.088 4.088 21 C -0.089 4.089 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.311 0.689 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.146 0.854 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -6.653 -0.658 7.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.562 4.562 3 S 0.358 5.642 4 C -0.084 4.084 5 C -0.445 4.445 6 H 0.116 0.884 7 C -0.199 4.199 8 N -0.431 5.431 9 Si 0.835 3.165 10 H -0.180 1.180 11 H -0.181 1.181 12 H -0.182 1.182 13 N -0.330 5.330 14 C -0.015 4.015 15 C -0.030 4.030 16 C -0.137 4.137 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.089 4.089 21 C -0.145 4.145 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.169 0.831 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.797 -5.665 -0.665 6.852 hybrid contribution 0.321 -0.121 0.062 0.349 sum -3.476 -5.786 -0.603 6.776 Atomic orbital electron populations 1.19666 0.87787 1.00505 1.00611 1.25792 1.02057 0.99115 1.29208 1.83960 0.98213 1.08110 1.73878 1.24228 0.97808 0.89318 0.97060 1.19308 0.90860 0.93382 1.40977 0.88374 1.27151 1.05796 0.95574 0.91364 1.68800 1.35363 1.06156 1.32798 0.84604 0.73618 0.78746 0.79560 1.17962 1.18104 1.18158 1.67448 1.15289 1.17477 1.32770 1.19090 0.88418 0.93009 1.01025 1.18504 0.96618 0.90772 0.97086 1.21285 0.96495 0.97733 0.98171 1.21334 1.00796 0.92156 1.00031 1.21522 0.96557 1.00564 0.94991 1.21241 0.97801 0.94652 1.00588 1.20204 0.97659 0.94130 0.96916 1.20514 0.96647 1.00191 0.97191 0.92901 0.93222 0.92193 0.87616 0.86655 0.83093 0.82481 0.83601 0.92398 0.90003 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.07 9.15 71.23 0.65 -0.42 16 2 C -0.44 -21.68 6.40 25.45 0.16 -21.52 16 3 S 0.10 5.20 20.09 -56.49 -1.13 4.06 16 4 C 0.17 9.60 7.11 85.12 0.61 10.20 16 5 C -0.40 -21.53 9.44 23.14 0.22 -21.31 16 6 H 0.10 5.14 7.85 -2.91 -0.02 5.12 16 7 C 0.02 0.98 5.50 85.33 0.47 1.45 16 8 N -0.80 -38.74 10.64 21.87 0.23 -38.51 16 9 Si 1.02 35.23 29.56 68.60 2.03 37.26 16 10 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 11 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 12 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 13 N -0.61 -34.17 9.39 -183.96 -1.73 -35.90 16 14 C 0.12 6.31 5.30 41.64 0.22 6.54 16 15 C -0.03 -1.19 5.50 -20.04 -0.11 -1.30 16 16 C -0.12 -4.28 8.72 22.50 0.20 -4.09 16 17 C -0.13 -3.48 10.03 22.24 0.22 -3.26 16 18 C -0.12 -2.99 10.04 22.33 0.22 -2.77 16 19 C -0.13 -3.68 9.67 22.24 0.22 -3.47 16 20 C -0.09 -3.41 5.91 -19.63 -0.12 -3.52 16 21 C -0.09 -3.46 8.86 71.24 0.63 -2.83 16 22 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 2.17 6.57 -2.39 -0.02 2.15 16 25 H 0.31 13.13 8.29 -92.71 -0.77 12.36 16 26 H 0.12 4.16 6.56 -2.91 -0.02 4.14 16 27 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 28 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 29 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 32 H 0.03 1.45 7.03 -2.39 -0.02 1.43 16 Total: -1.00 -64.09 285.58 4.12 -59.97 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.13 Total: 19.42 kcal Atomic # 6 Polarization: -49.89 SS G_CDS: 3.59 Total: -46.30 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.50 Total: -74.41 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.13 Total: 4.06 kcal Total: -64.09 4.12 -59.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390236154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.280 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds