Wall clock time and date at job start Mon Mar 30 2020 07:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48495 * 109.46866 * 269.99628 * 3 2 1 5 5 H 1.48505 * 109.47239 * 29.99433 * 3 2 1 6 6 H 1.48495 * 109.47330 * 149.99449 * 3 2 1 7 7 C 1.38810 * 120.00616 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99709 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00281 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99999 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.33612 * 125.12094 * 89.98034 * 11 10 9 13 13 C 1.37969 * 115.06538 * 180.02562 * 12 11 10 14 14 C 1.34788 * 114.70397 * 0.02562 * 13 12 11 15 15 C 1.47826 * 125.27125 * 179.97438 * 14 13 12 16 16 C 1.39577 * 120.14577 * 359.73860 * 15 14 13 17 17 C 1.37955 * 119.85541 * 179.72236 * 16 15 14 18 18 C 1.38356 * 120.14192 * 0.58147 * 17 16 15 19 19 C 1.38361 * 120.29598 * 359.69150 * 18 17 16 20 20 C 1.37961 * 120.14178 * 0.02562 * 19 18 17 21 21 S 1.75864 * 125.12070 * 270.02241 * 11 10 9 22 22 H 0.96992 * 120.00372 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00377 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47089 * 59.99578 * 10 9 7 25 25 H 1.09001 * 109.46725 * 299.99496 * 10 9 7 26 26 H 1.08001 * 122.47082 * 0.06413 * 12 11 10 27 27 H 1.07994 * 122.64868 * 180.02562 * 13 12 11 28 28 H 1.08005 * 120.06783 * 0.02562 * 16 15 14 29 29 H 1.08001 * 119.92647 * 180.29159 * 17 16 15 30 30 H 1.08004 * 119.85083 * 179.72082 * 18 17 16 31 31 H 1.07997 * 119.92774 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.07400 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.5938 -2.1953 0.0011 12 6 6.3495 -2.0544 1.0939 13 6 7.6850 -1.8056 0.8530 14 6 8.0200 -1.7427 -0.4510 15 6 9.3800 -1.4887 -0.9717 16 6 10.4419 -1.2851 -0.0890 17 6 11.7097 -1.0543 -0.5814 18 6 11.9277 -1.0124 -1.9470 19 6 10.8785 -1.2077 -2.8276 20 6 9.6068 -1.4453 -2.3482 21 16 6.5884 -2.0098 -1.4374 22 1 -0.4850 0.8399 -0.0004 23 1 3.8647 -0.3619 0.0007 24 1 3.8493 -3.0421 -0.8891 25 1 3.8486 -3.0424 0.8909 26 1 5.9448 -2.1303 2.0924 27 1 8.4051 -1.6718 1.6466 28 1 10.2721 -1.3132 0.9773 29 1 12.5330 -0.9013 0.1007 30 1 12.9213 -0.8268 -2.3274 31 1 11.0554 -1.1742 -3.8924 32 1 8.7887 -1.5980 -3.0365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393742599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:24 Heat of formation + Delta-G solvation = 68.350038 kcal Electronic energy + Delta-G solvation = -15531.178381 eV Core-core repulsion = 12969.437366 eV Total energy + Delta-G solvation = -2561.741015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40601 -37.65226 -34.90337 -32.46567 -31.26054 -31.13466 -28.68990 -25.76454 -23.69059 -22.71810 -21.97299 -21.59649 -18.84025 -18.08045 -17.04818 -16.38461 -15.45886 -14.85341 -14.71465 -14.65811 -13.83983 -13.61961 -13.47358 -13.30467 -12.94824 -12.62588 -12.39139 -11.82512 -11.75145 -11.47752 -11.27125 -11.08774 -10.87476 -10.49360 -10.18876 -9.65996 -9.58575 -9.16583 -8.95609 -8.32924 -7.88119 -7.29923 -5.80376 -3.17279 0.47551 1.20117 1.67476 1.71798 2.16582 2.90408 3.37509 3.42030 3.44826 3.72052 4.52203 4.57340 4.70241 4.75587 4.90842 5.15443 5.22733 5.30286 5.48391 5.56931 5.63532 5.64080 5.72663 5.82938 6.05508 6.20953 6.25739 6.29549 6.39265 6.43968 6.54038 6.74162 6.76718 7.93221 8.37987 9.15622 9.87919 10.07682 11.37557 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.034282 B = 0.004404 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.550689 B = 6356.682368 C = 6546.146641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.750 5.750 10 C 0.221 3.779 11 C -0.160 4.160 12 C -0.138 4.138 13 C -0.116 4.116 14 C -0.170 4.170 15 C -0.002 4.002 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.117 4.117 21 S 0.127 5.873 22 H 0.261 0.739 23 H 0.364 0.636 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.143 0.857 27 H 0.137 0.863 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.128 -3.734 -2.110 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.397 5.397 10 C 0.092 3.908 11 C -0.278 4.278 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.287 4.287 15 C -0.003 4.003 16 C -0.128 4.128 17 C -0.134 4.134 18 C -0.145 4.145 19 C -0.131 4.131 20 C -0.135 4.135 21 S 0.395 5.605 22 H 0.071 0.929 23 H 0.197 0.803 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.161 0.839 27 H 0.155 0.845 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.527 -3.885 -3.681 24.128 hybrid contribution 0.775 1.339 1.560 2.197 sum 24.302 -2.546 -2.120 24.527 Atomic orbital electron populations 1.69692 1.05072 1.25966 1.57162 1.24636 0.95198 0.97183 1.01680 0.86590 0.79341 0.84963 0.78001 1.20877 1.21533 1.20213 1.19040 0.80204 0.94934 1.43658 0.88963 1.42729 1.03951 1.01694 1.91286 1.19190 0.81590 0.89984 0.99996 1.25137 1.01025 1.06630 0.94990 1.20046 0.92756 1.04220 0.99805 1.20254 0.96515 1.02660 0.95263 1.22952 0.96338 1.12525 0.96889 1.18112 0.90140 0.99013 0.93084 1.21196 0.92048 1.00020 0.99556 1.21065 0.96695 1.00017 0.95574 1.21202 0.99029 1.00791 0.93470 1.21053 0.92548 0.99646 0.99858 1.21261 0.97496 1.00544 0.94242 1.84147 0.97345 1.69414 1.09599 0.92931 0.80314 0.94281 0.93229 0.83947 0.84516 0.85675 0.85826 0.86057 0.85789 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 22.49 27.74 -169.99 -4.71 17.78 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 7 C -0.25 -7.11 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 9 N -0.75 -18.29 5.40 -61.08 -0.33 -18.62 16 10 C 0.22 4.39 6.75 -5.19 -0.04 4.36 16 11 C -0.16 -2.73 5.88 -35.93 -0.21 -2.94 16 12 C -0.14 -2.12 10.03 -41.30 -0.41 -2.54 16 13 C -0.12 -1.58 9.65 -40.90 -0.39 -1.98 16 14 C -0.17 -2.40 6.37 -36.88 -0.24 -2.63 16 15 C 0.00 -0.02 5.87 -104.98 -0.62 -0.64 16 16 C -0.11 -1.16 9.54 -39.19 -0.37 -1.53 16 17 C -0.12 -1.05 10.03 -39.64 -0.40 -1.45 16 18 C -0.13 -1.12 10.04 -39.49 -0.40 -1.51 16 19 C -0.11 -1.09 10.03 -39.64 -0.40 -1.49 16 20 C -0.12 -1.36 9.60 -39.18 -0.38 -1.73 16 21 S 0.13 1.95 22.24 -107.50 -2.39 -0.44 16 22 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 23 H 0.36 8.86 5.52 -40.82 -0.23 8.63 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 27 H 0.14 1.50 6.89 -52.49 -0.36 1.14 16 28 H 0.13 1.15 6.76 -52.48 -0.35 0.79 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.37 7.28 -52.49 -0.38 0.99 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -31.86 291.19 -9.83 -41.68 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.45 Total: 4.98 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -4.10 Total: -21.18 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.45 Total: -47.21 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.39 Total: -0.44 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.86 -9.83 -41.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393742599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.032 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds