Wall clock time and date at job start Mon Mar 30 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48495 * 109.46866 * 269.99628 * 3 2 1 5 5 H 1.48505 * 109.47239 * 29.99433 * 3 2 1 6 6 H 1.48495 * 109.47330 * 149.99449 * 3 2 1 7 7 C 1.38810 * 120.00616 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99709 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00281 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99999 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.33612 * 125.12094 * 89.98034 * 11 10 9 13 13 C 1.37969 * 115.06538 * 180.02562 * 12 11 10 14 14 C 1.34788 * 114.70397 * 0.02562 * 13 12 11 15 15 C 1.47826 * 125.27125 * 179.97438 * 14 13 12 16 16 C 1.39577 * 120.14577 * 359.73860 * 15 14 13 17 17 C 1.37955 * 119.85541 * 179.72236 * 16 15 14 18 18 C 1.38356 * 120.14192 * 0.58147 * 17 16 15 19 19 C 1.38361 * 120.29598 * 359.69150 * 18 17 16 20 20 C 1.37961 * 120.14178 * 0.02562 * 19 18 17 21 21 S 1.75864 * 125.12070 * 270.02241 * 11 10 9 22 22 H 0.96992 * 120.00372 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00377 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47089 * 59.99578 * 10 9 7 25 25 H 1.09001 * 109.46725 * 299.99496 * 10 9 7 26 26 H 1.08001 * 122.47082 * 0.06413 * 12 11 10 27 27 H 1.07994 * 122.64868 * 180.02562 * 13 12 11 28 28 H 1.08005 * 120.06783 * 0.02562 * 16 15 14 29 29 H 1.08001 * 119.92647 * 180.29159 * 17 16 15 30 30 H 1.08004 * 119.85083 * 179.72082 * 18 17 16 31 31 H 1.07997 * 119.92774 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.07400 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.5938 -2.1953 0.0011 12 6 6.3495 -2.0544 1.0939 13 6 7.6850 -1.8056 0.8530 14 6 8.0200 -1.7427 -0.4510 15 6 9.3800 -1.4887 -0.9717 16 6 10.4419 -1.2851 -0.0890 17 6 11.7097 -1.0543 -0.5814 18 6 11.9277 -1.0124 -1.9470 19 6 10.8785 -1.2077 -2.8276 20 6 9.6068 -1.4453 -2.3482 21 16 6.5884 -2.0098 -1.4374 22 1 -0.4850 0.8399 -0.0004 23 1 3.8647 -0.3619 0.0007 24 1 3.8493 -3.0421 -0.8891 25 1 3.8486 -3.0424 0.8909 26 1 5.9448 -2.1303 2.0924 27 1 8.4051 -1.6718 1.6466 28 1 10.2721 -1.3132 0.9773 29 1 12.5330 -0.9013 0.1007 30 1 12.9213 -0.8268 -2.3274 31 1 11.0554 -1.1742 -3.8924 32 1 8.7887 -1.5980 -3.0365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393742599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:23 Heat of formation + Delta-G solvation = 50.436649 kcal Electronic energy + Delta-G solvation = -15531.955164 eV Core-core repulsion = 12969.437366 eV Total energy + Delta-G solvation = -2562.517797 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22369 -38.80332 -36.69042 -34.00666 -32.81379 -31.89763 -30.11001 -27.12084 -25.07283 -23.89840 -23.13523 -22.80468 -20.21453 -19.67880 -18.24205 -17.37303 -16.72096 -16.43644 -15.99009 -15.56980 -15.40161 -14.87059 -14.65366 -14.50872 -14.31643 -13.92555 -13.73212 -13.17419 -13.09344 -12.83492 -12.76455 -12.29692 -12.16339 -12.03719 -11.86302 -11.57728 -11.06842 -10.58860 -9.90775 -9.50725 -9.38512 -8.90532 -8.07741 -5.42697 -0.52877 0.46101 0.54491 0.71856 1.00640 1.34861 1.36703 1.44263 1.81819 2.43626 2.93273 3.23803 3.59415 3.72267 3.87309 4.00061 4.06156 4.26646 4.38207 4.43319 4.56557 4.64878 4.78590 4.79856 4.91698 5.09701 5.15568 5.29446 5.45932 5.54520 5.57875 5.63423 5.68831 6.04014 6.15541 6.99942 7.73771 7.94685 9.13380 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.034282 B = 0.004404 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.550689 B = 6356.682368 C = 6546.146641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.055 4.055 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.240 4.240 8 H 0.063 0.937 9 N -0.753 5.753 10 C 0.223 3.777 11 C -0.198 4.198 12 C -0.124 4.124 13 C -0.127 4.127 14 C -0.153 4.153 15 C -0.034 4.034 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.132 4.132 21 S 0.114 5.886 22 H 0.260 0.740 23 H 0.365 0.635 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.152 0.848 27 H 0.168 0.832 28 H 0.140 0.860 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.085 -2.807 -1.800 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.247 4.247 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.182 1.182 7 C -0.370 4.370 8 H 0.081 0.919 9 N -0.399 5.399 10 C 0.096 3.904 11 C -0.315 4.315 12 C -0.154 4.154 13 C -0.157 4.157 14 C -0.271 4.271 15 C -0.036 4.036 16 C -0.132 4.132 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.138 4.138 20 C -0.151 4.151 21 S 0.382 5.618 22 H 0.069 0.931 23 H 0.199 0.801 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.170 0.830 27 H 0.185 0.815 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 27.523 -2.991 -3.372 27.889 hybrid contribution -0.268 0.951 1.413 1.724 sum 27.255 -2.040 -1.959 27.401 Atomic orbital electron populations 1.69858 1.06945 1.26854 1.59244 1.25422 0.96047 1.00985 1.02277 0.85497 0.78597 0.80061 0.78232 1.20373 1.21565 1.18242 1.19044 0.82170 0.93864 1.41948 0.91884 1.42747 1.02554 1.03519 1.91108 1.19142 0.83483 0.88020 0.99747 1.24772 0.99647 1.10617 0.96493 1.20288 0.93391 1.02059 0.99701 1.20482 0.96274 1.02985 0.95938 1.23264 0.96519 1.10491 0.96782 1.18245 0.89817 1.01591 0.93909 1.21458 0.92182 0.99417 1.00125 1.21455 0.96842 0.98882 0.96337 1.21635 1.00069 0.98750 0.93395 1.21360 0.91978 0.99113 1.01320 1.21395 0.98449 1.01231 0.94061 1.84117 0.98227 1.69920 1.09531 0.93085 0.80143 0.94671 0.92937 0.83023 0.81501 0.84264 0.82976 0.83139 0.83769 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 2 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 3 Si 0.95 46.67 27.74 68.60 1.90 48.57 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -11.74 6.52 99.48 0.65 -11.09 16 7 C -0.24 -13.99 10.47 84.03 0.88 -13.11 16 8 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 9 N -0.75 -36.86 5.40 -347.17 -1.87 -38.73 16 10 C 0.22 8.99 6.75 85.63 0.58 9.57 16 11 C -0.20 -6.69 5.88 24.63 0.14 -6.54 16 12 C -0.12 -3.61 10.03 21.16 0.21 -3.40 16 13 C -0.13 -3.18 9.65 21.41 0.21 -2.98 16 14 C -0.15 -4.08 6.37 24.02 0.15 -3.93 16 15 C -0.03 -0.78 5.87 -20.09 -0.12 -0.90 16 16 C -0.11 -2.05 9.54 22.53 0.21 -1.83 16 17 C -0.12 -1.67 10.03 22.23 0.22 -1.44 16 18 C -0.12 -1.65 10.04 22.33 0.22 -1.42 16 19 C -0.12 -1.99 10.03 22.23 0.22 -1.76 16 20 C -0.13 -2.87 9.60 22.53 0.22 -2.66 16 21 S 0.11 3.47 22.24 -56.49 -1.26 2.21 16 22 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.37 17.49 5.52 -92.71 -0.51 16.98 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.17 3.09 6.89 -2.91 -0.02 3.07 16 28 H 0.14 2.04 6.76 -2.91 -0.02 2.02 16 29 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.12 2.55 7.28 -2.91 -0.02 2.53 16 Total: -1.00 -69.35 291.19 3.26 -66.08 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.56 Total: 18.12 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.62 Total: -33.26 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -1.57 Total: -101.72 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.90 Total: 48.57 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.26 Total: 2.21 kcal Total: -69.35 3.26 -66.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393742599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.521 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds