Wall clock time and date at job start Mon Mar 30 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48498 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46948 * 299.99960 * 3 2 1 6 6 H 1.48501 * 109.47406 * 59.99699 * 3 2 1 7 7 C 1.40077 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00244 * 163.21682 * 7 2 1 9 9 C 1.40883 * 119.99756 * 343.22763 * 7 2 1 10 10 C 1.40788 * 120.74343 * 334.39554 * 9 7 2 11 11 N 1.31348 * 120.51633 * 179.97438 * 10 9 7 12 12 C 1.32366 * 122.29628 * 359.97438 * 11 10 9 13 13 Cl 1.73601 * 119.27031 * 179.97438 * 12 11 10 14 14 C 1.38260 * 121.45933 * 359.74448 * 12 11 10 15 15 C 1.39426 * 119.27029 * 0.50963 * 14 12 11 16 16 C 1.47881 * 121.03110 * 179.77836 * 15 14 12 17 17 C 1.39636 * 120.14901 * 309.72167 * 16 15 14 18 18 C 1.37935 * 119.85171 * 179.97438 * 17 16 15 19 19 C 1.38390 * 120.14670 * 359.97438 * 18 17 16 20 20 C 1.38396 * 120.30096 * 0.02562 * 19 18 17 21 21 C 1.37932 * 120.14809 * 359.97438 * 20 19 18 22 22 H 0.97004 * 119.99805 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.74154 * 0.02562 * 10 9 7 24 24 H 1.08003 * 120.36292 * 180.28787 * 14 12 11 25 25 H 1.07998 * 120.07432 * 359.97438 * 17 16 15 26 26 H 1.07994 * 119.92501 * 179.72123 * 18 17 16 27 27 H 1.08000 * 119.85171 * 179.97438 * 19 18 17 28 28 H 1.08001 * 119.92262 * 179.97438 * 20 19 18 29 29 H 1.07995 * 120.07688 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.7018 1.3464 0.0006 5 1 1.8831 2.3964 -1.2125 6 1 1.8831 2.3965 1.2124 7 6 2.0082 -1.2131 0.0005 8 1 3.0537 -1.2332 -0.2695 9 6 1.3487 -2.4070 0.3532 10 6 0.2175 -2.3840 1.1911 11 7 -0.3942 -3.4998 1.5166 12 6 0.0124 -4.6821 1.0819 13 17 -0.8549 -6.1072 1.5621 14 6 1.1098 -4.8067 0.2501 15 6 1.8099 -3.6627 -0.1307 16 6 2.9919 -3.7513 -1.0150 17 6 4.0208 -4.6488 -0.7224 18 6 5.1203 -4.7268 -1.5517 19 6 5.2048 -3.9185 -2.6718 20 6 4.1886 -3.0268 -2.9676 21 6 3.0835 -2.9386 -2.1468 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1505 -1.4414 1.5686 24 1 1.4234 -5.7798 -0.0978 25 1 3.9559 -5.2805 0.1511 26 1 5.9188 -5.4173 -1.3241 27 1 6.0680 -3.9832 -3.3176 28 1 4.2610 -2.3985 -3.8431 29 1 2.2910 -2.2427 -2.3790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396143227.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:33 Heat of formation + Delta-G solvation = 17.588744 kcal Electronic energy + Delta-G solvation = -16130.296127 eV Core-core repulsion = 13428.477137 eV Total energy + Delta-G solvation = -2701.818990 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70905 -39.29394 -37.20789 -35.91209 -34.14324 -31.95420 -31.35766 -30.38983 -27.51482 -24.63532 -23.73948 -22.85238 -21.79116 -19.49028 -18.18027 -17.41696 -16.86057 -16.58069 -15.78240 -15.50863 -15.50365 -14.75000 -14.66511 -14.12905 -13.80924 -13.72290 -13.47596 -13.03841 -12.86523 -12.58804 -12.26423 -12.00027 -11.92651 -11.87720 -11.78484 -11.24700 -10.51466 -10.07426 -9.70318 -9.47688 -9.28185 -8.85161 -6.49013 0.24098 0.60963 0.66492 1.06880 1.37494 1.40807 1.47733 1.55348 2.14656 2.58594 3.03962 3.53323 3.98982 4.15724 4.25166 4.27213 4.42314 4.55925 4.68544 4.80275 4.84444 5.03497 5.12789 5.19654 5.26182 5.39990 5.52607 5.72944 5.78133 5.87116 6.02616 6.22483 6.31542 6.56852 6.66382 7.48785 8.11733 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.010066 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.241953 B = 2781.020194 C = 4733.006024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.039 3.961 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.437 4.437 8 H 0.090 0.910 9 C 0.055 3.945 10 C 0.042 3.958 11 N -0.487 5.487 12 C 0.018 3.982 13 Cl -0.075 7.075 14 C -0.096 4.096 15 C -0.148 4.148 16 C -0.023 4.023 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.112 4.112 22 H 0.299 0.701 23 H 0.147 0.853 24 H 0.132 0.868 25 H 0.119 0.881 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 -2.174 -4.357 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.465 4.465 8 H 0.108 0.892 9 C 0.050 3.950 10 C -0.124 4.124 11 N -0.197 5.197 12 C -0.140 4.140 13 Cl -0.048 7.048 14 C -0.117 4.117 15 C -0.156 4.156 16 C -0.023 4.023 17 C -0.149 4.149 18 C -0.139 4.139 19 C -0.147 4.147 20 C -0.145 4.145 21 C -0.130 4.130 22 H 0.110 0.890 23 H 0.164 0.836 24 H 0.150 0.850 25 H 0.137 0.863 26 H 0.166 0.834 27 H 0.168 0.832 28 H 0.157 0.843 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.535 -2.199 -3.794 8.718 hybrid contribution 0.131 0.538 -0.190 0.585 sum 7.666 -1.661 -3.984 8.797 Atomic orbital electron populations 1.69773 1.09255 1.31905 1.31760 1.26910 0.95410 1.04832 0.90838 0.85103 0.79565 0.75660 0.79319 1.17831 1.18636 1.18699 1.19775 0.98133 0.90849 1.37714 0.89151 1.18824 0.92559 0.93394 0.90268 1.22749 0.96847 0.93487 0.99301 1.66297 1.31444 0.98454 1.23549 1.20739 0.98138 0.87406 1.07744 1.98239 1.78068 1.36313 1.92141 1.21369 0.94387 0.98685 0.97245 1.19162 1.00119 0.92596 1.03701 1.18662 0.93162 0.96500 0.93940 1.21412 0.94117 0.98991 1.00428 1.21321 0.97681 1.00008 0.94843 1.21485 0.99310 0.96017 0.97864 1.21323 0.93703 0.99596 0.99846 1.21312 0.98782 0.98488 0.94441 0.88954 0.83637 0.85005 0.86254 0.83421 0.83168 0.84267 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.14 10.99 21.85 0.24 -37.90 15 2 C 0.04 1.75 5.16 85.30 0.44 2.19 15 3 Si 0.98 34.10 29.59 68.60 2.03 36.13 15 4 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 6 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 7 C -0.44 -20.99 7.27 23.36 0.17 -20.82 15 8 H 0.09 4.25 6.70 -2.91 -0.02 4.23 15 9 C 0.05 2.78 5.58 -21.01 -0.12 2.66 15 10 C 0.04 2.23 9.88 85.39 0.84 3.08 15 11 N -0.49 -25.45 10.29 -184.78 -1.90 -27.35 15 12 C 0.02 0.87 7.27 84.62 0.62 1.48 15 13 Cl -0.08 -3.03 29.09 -2.72 -0.08 -3.11 15 14 C -0.10 -4.31 9.38 22.56 0.21 -4.10 15 15 C -0.15 -6.92 5.54 -19.44 -0.11 -7.03 15 16 C -0.02 -0.91 4.99 -20.05 -0.10 -1.01 15 17 C -0.13 -4.42 9.57 22.54 0.22 -4.21 15 18 C -0.12 -3.23 10.03 22.23 0.22 -3.01 15 19 C -0.13 -3.26 10.04 22.34 0.22 -3.04 15 20 C -0.13 -3.75 10.03 22.23 0.22 -3.53 15 21 C -0.11 -4.23 8.08 22.54 0.18 -4.05 15 22 H 0.30 12.68 8.30 -92.71 -0.77 11.91 15 23 H 0.15 7.84 6.22 -2.91 -0.02 7.82 15 24 H 0.13 5.18 8.06 -2.91 -0.02 5.15 15 25 H 0.12 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.15 2.92 8.06 -2.91 -0.02 2.89 15 27 H 0.15 2.66 8.06 -2.91 -0.02 2.64 15 28 H 0.14 3.33 8.06 -2.91 -0.02 3.31 15 29 H 0.10 4.37 7.37 -2.91 -0.02 4.35 15 Total: -1.00 -56.10 272.99 4.49 -51.61 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.18 Total: 21.99 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 3.02 Total: -41.37 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -1.66 Total: -65.25 kcal Atomic # 14 Polarization: 34.10 SS G_CDS: 2.03 Total: 36.13 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.08 Total: -3.11 kcal Total: -56.10 4.49 -51.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396143227.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.200 kcal (2) G-P(sol) polarization free energy of solvation -56.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds