Wall clock time and date at job start Mon Mar 30 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30711 * 1 3 3 Si 1.86794 * 120.00542 * 2 1 4 4 H 1.48499 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46967 * 300.00056 * 3 2 1 6 6 H 1.48498 * 109.46911 * 60.00247 * 3 2 1 7 7 C 1.40100 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.41004 * 120.00250 * 359.97438 * 7 2 1 10 10 C 1.40815 * 119.67623 * 180.02562 * 9 7 2 11 11 C 1.36835 * 119.24017 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 120.71243 * 179.72795 * 11 10 9 13 13 C 1.40384 * 118.57881 * 359.97438 * 11 10 9 14 14 C 1.47954 * 120.35707 * 179.97438 * 13 11 10 15 15 C 1.39628 * 120.14606 * 309.72993 * 14 13 11 16 16 C 1.37930 * 119.85053 * 179.72103 * 15 14 13 17 17 C 1.38392 * 120.14543 * 0.55418 * 16 15 14 18 18 C 1.38395 * 120.29662 * 359.71932 * 17 16 15 19 19 C 1.37924 * 120.14503 * 0.02562 * 18 17 16 20 20 C 1.40054 * 119.29131 * 0.02562 * 13 11 10 21 21 N 1.31210 * 120.70469 * 359.97438 * 20 13 11 22 22 H 0.97003 * 119.99428 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.38302 * 359.95987 * 10 9 7 24 24 H 1.08002 * 120.07302 * 359.97438 * 15 14 13 25 25 H 1.08001 * 119.92333 * 180.29843 * 16 15 14 26 26 H 1.08007 * 119.84996 * 179.74380 * 17 16 15 27 27 H 1.08002 * 119.92685 * 179.97438 * 18 17 16 28 28 H 1.08007 * 120.07069 * 180.02562 * 19 18 17 29 29 H 1.08003 * 119.65180 * 180.02562 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.7012 1.3462 -0.0006 5 1 1.8825 2.3963 -1.2125 6 1 1.8826 2.3963 1.2125 7 6 2.0075 -1.2134 -0.0005 8 1 3.0875 -1.2134 -0.0001 9 6 1.3025 -2.4345 -0.0005 10 6 2.0134 -3.6500 -0.0005 11 6 1.3202 -4.8297 0.0000 12 17 2.1578 -6.3503 -0.0071 13 6 -0.0830 -4.7842 0.0011 14 6 -0.8717 -6.0359 0.0011 15 6 -0.5933 -7.0402 -0.9281 16 6 -1.3287 -8.2071 -0.9189 17 6 -2.3480 -8.3790 0.0012 18 6 -2.6329 -7.3852 0.9213 19 6 -1.9018 -6.2157 0.9263 20 6 -0.7282 -3.5411 0.0010 21 7 -0.0355 -2.4267 0.0005 22 1 -0.4849 0.8401 0.0004 23 1 3.0934 -3.6511 -0.0012 24 1 0.1987 -6.9053 -1.6499 25 1 -1.1112 -8.9867 -1.6340 26 1 -2.9236 -9.2929 0.0015 27 1 -3.4300 -7.5255 1.6364 28 1 -2.1249 -5.4411 1.6452 29 1 -1.8074 -3.4993 0.0023 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396144569.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:55 Heat of formation + Delta-G solvation = 27.757676 kcal Electronic energy + Delta-G solvation = -15860.546811 eV Core-core repulsion = 13159.168778 eV Total energy + Delta-G solvation = -2701.378032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60222 -39.30416 -37.40556 -35.66906 -33.37408 -32.42607 -31.64684 -30.42001 -27.43734 -24.21380 -23.95735 -22.84719 -21.91432 -19.60133 -17.99782 -17.59930 -16.51973 -16.47651 -16.18173 -15.53014 -15.00667 -14.56940 -14.51124 -14.22153 -14.13648 -13.50443 -13.19078 -13.09471 -12.98583 -12.68182 -12.56888 -12.19913 -11.91362 -11.87696 -11.39843 -11.23800 -10.17182 -9.98950 -9.70761 -9.67968 -9.07909 -8.43479 -6.62646 0.24656 0.63824 0.82183 0.99684 1.28649 1.41447 1.51160 1.57112 2.18677 2.69329 3.05787 3.73894 3.99474 4.13202 4.19232 4.24418 4.39209 4.58034 4.67555 4.75790 4.84071 5.04232 5.10859 5.20526 5.25449 5.38924 5.47236 5.68468 5.71702 5.86632 5.93132 6.12689 6.26416 6.52330 6.77101 7.99718 8.30442 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.033915 B = 0.005593 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.393837 B = 5004.855642 C = 5664.028560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.021 3.979 3 Si 0.992 3.008 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.440 4.440 8 H 0.097 0.903 9 C 0.230 3.770 10 C -0.279 4.279 11 C 0.051 3.949 12 Cl -0.078 7.078 13 C -0.261 4.261 14 C -0.016 4.016 15 C -0.127 4.127 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.118 4.118 19 C -0.135 4.135 20 C 0.149 3.851 21 N -0.515 5.515 22 H 0.285 0.715 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.141 0.859 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.115 0.885 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -8.681 0.059 8.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.202 4.202 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.470 4.470 8 H 0.115 0.885 9 C 0.106 3.894 10 C -0.302 4.302 11 C 0.019 3.981 12 Cl -0.050 7.050 13 C -0.267 4.267 14 C -0.016 4.016 15 C -0.145 4.145 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.136 4.136 19 C -0.153 4.153 20 C -0.019 4.019 21 N -0.228 5.228 22 H 0.096 0.904 23 H 0.137 0.863 24 H 0.126 0.874 25 H 0.159 0.841 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.133 0.867 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.776 -7.840 0.058 8.317 hybrid contribution 0.944 -0.109 -0.018 0.950 sum -1.832 -7.949 0.040 8.157 Atomic orbital electron populations 1.70194 1.09052 1.29835 1.26898 1.27105 0.95806 1.04811 0.92510 0.84997 0.79446 0.75392 0.78990 1.17485 1.18927 1.18899 1.20133 0.95343 0.90104 1.41418 0.88458 1.18968 0.88637 0.92520 0.89258 1.21485 0.99944 0.91717 1.17095 1.20734 0.91703 0.85792 0.99852 1.98270 1.78084 1.31745 1.96867 1.19214 0.90918 0.94445 1.22116 1.18686 0.95164 0.92389 0.95410 1.21353 1.00215 0.94421 0.98502 1.21305 0.95969 0.96938 0.99695 1.21463 0.98144 0.99933 0.95613 1.21319 0.99713 0.93064 0.99523 1.21386 0.96541 0.98733 0.98661 1.23055 0.99536 0.86989 0.92286 1.68720 1.07475 1.27621 1.18934 0.90388 0.86321 0.87437 0.84110 0.83330 0.83773 0.86731 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.08 11.44 21.85 0.25 -37.83 15 2 C 0.02 1.04 5.50 85.31 0.47 1.51 15 3 Si 0.99 35.95 29.56 68.60 2.03 37.97 15 4 H -0.25 -8.74 7.11 99.48 0.71 -8.04 15 5 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 7 C -0.44 -22.86 9.12 23.40 0.21 -22.64 15 8 H 0.10 4.68 7.85 -2.91 -0.02 4.65 15 9 C 0.23 12.41 6.55 40.15 0.26 12.67 15 10 C -0.28 -13.68 9.57 22.57 0.22 -13.46 15 11 C 0.05 2.32 6.29 22.46 0.14 2.46 15 12 Cl -0.08 -2.96 26.21 -2.72 -0.07 -3.03 15 13 C -0.26 -11.66 5.51 -19.74 -0.11 -11.77 15 14 C -0.02 -0.59 5.15 -20.03 -0.10 -0.70 15 15 C -0.13 -4.29 8.26 22.53 0.19 -4.11 15 16 C -0.12 -3.26 10.03 22.23 0.22 -3.04 15 17 C -0.13 -3.20 10.04 22.34 0.22 -2.98 15 18 C -0.12 -3.11 10.03 22.23 0.22 -2.89 15 19 C -0.13 -4.49 9.53 22.53 0.21 -4.27 15 20 C 0.15 7.17 10.69 85.23 0.91 8.08 15 21 N -0.52 -28.11 7.83 -188.27 -1.47 -29.59 15 22 H 0.29 13.10 8.29 -92.71 -0.77 12.33 15 23 H 0.12 5.43 8.06 -2.91 -0.02 5.41 15 24 H 0.11 3.76 7.23 -2.91 -0.02 3.74 15 25 H 0.14 2.95 8.06 -2.91 -0.02 2.92 15 26 H 0.15 2.49 8.06 -2.91 -0.02 2.47 15 27 H 0.14 2.87 8.06 -2.91 -0.02 2.85 15 28 H 0.11 3.78 8.05 -2.91 -0.02 3.76 15 29 H 0.14 6.20 8.04 -2.91 -0.02 6.18 15 Total: -1.00 -59.36 274.33 4.97 -54.39 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.17 Total: 19.22 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 3.07 Total: -41.12 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -1.22 Total: -67.42 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.97 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.07 Total: -3.03 kcal Total: -59.36 4.97 -54.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396144569.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.143 kcal (2) G-P(sol) polarization free energy of solvation -59.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds