Wall clock time and date at job start Mon Mar 30 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48506 * 109.47215 * 269.99975 * 3 2 1 5 5 H 1.48496 * 109.47502 * 29.99762 * 3 2 1 6 6 H 1.48501 * 109.47225 * 150.00025 * 3 2 1 7 7 C 1.40073 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99770 * 161.12820 * 7 2 1 9 9 C 1.40839 * 119.99771 * 341.13014 * 7 2 1 10 10 C 1.41307 * 120.73216 * 312.32680 * 9 7 2 11 11 Cl 1.73597 * 120.87784 * 0.02827 * 10 9 7 12 12 C 1.38067 * 118.24467 * 179.76320 * 10 9 7 13 13 C 1.38776 * 119.64983 * 0.56119 * 12 10 9 14 14 N 1.31760 * 121.51760 * 359.67324 * 13 12 10 15 15 C 1.32537 * 121.90046 * 0.02681 * 14 13 12 16 16 C 1.47824 * 119.92357 * 179.97438 * 15 14 13 17 17 C 1.39673 * 120.14631 * 136.39703 * 16 15 14 18 18 C 1.37925 * 119.84188 * 179.79205 * 17 16 15 19 19 C 1.38394 * 120.15243 * 0.46307 * 18 17 16 20 20 C 1.38394 * 120.30764 * 359.79325 * 19 18 17 21 21 C 1.37919 * 120.14999 * 359.96967 * 20 19 18 22 22 H 0.97002 * 120.00167 * 5.08167 * 1 2 3 23 23 H 1.08000 * 120.17434 * 180.28429 * 12 10 9 24 24 H 1.08004 * 119.24498 * 179.70151 * 13 12 10 25 25 H 1.07996 * 120.07967 * 359.97438 * 17 16 15 26 26 H 1.08001 * 119.92259 * 180.25357 * 18 17 16 27 27 H 1.08004 * 119.84669 * 179.76219 * 19 18 17 28 28 H 1.07995 * 119.92881 * 179.97438 * 20 19 18 29 29 H 1.08005 * 120.07891 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0465 -1.4001 5 1 1.4392 2.6527 0.7000 6 1 3.5393 1.4403 0.7000 7 6 2.0082 -1.2130 0.0005 8 1 3.0446 -1.2382 -0.3020 9 6 1.3608 -2.3998 0.3956 10 6 0.5911 -2.4427 1.5798 11 17 0.4195 -1.0358 2.5823 12 6 -0.0255 -3.6315 1.9157 13 6 0.1339 -4.7422 1.0990 14 7 0.8584 -4.6905 -0.0003 15 6 1.4718 -3.5799 -0.3833 16 6 2.2743 -3.5712 -1.6247 17 6 2.1741 -2.5016 -2.5173 18 6 2.9290 -2.4980 -3.6717 19 6 3.7770 -3.5554 -3.9510 20 6 3.8772 -4.6209 -3.0736 21 6 3.1318 -4.6352 -1.9133 22 1 -0.4850 0.8367 -0.0744 23 1 -0.6250 -3.6979 2.8115 24 1 -0.3474 -5.6701 1.3705 25 1 1.5093 -1.6780 -2.3028 26 1 2.8556 -1.6696 -4.3608 27 1 4.3630 -3.5492 -4.8583 28 1 4.5406 -5.4430 -3.2979 29 1 3.2112 -5.4672 -1.2291 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396146567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:05 Heat of formation + Delta-G solvation = 37.633270 kcal Electronic energy + Delta-G solvation = -16440.333579 eV Core-core repulsion = 13739.383785 eV Total energy + Delta-G solvation = -2700.949794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.05725 -37.65136 -35.23518 -33.98346 -31.74748 -30.76693 -30.09001 -28.59601 -25.70662 -22.88586 -22.04889 -21.24372 -20.25068 -17.52074 -16.58925 -15.68164 -15.24756 -14.97562 -14.27490 -13.93772 -13.69203 -12.89775 -12.69964 -12.67787 -12.38064 -11.93918 -11.88402 -11.51489 -11.35221 -10.85746 -10.77458 -10.58193 -10.32989 -10.28396 -9.64604 -9.10020 -8.55680 -8.32537 -8.21165 -7.78443 -7.35629 -6.88879 -4.59462 1.73912 2.14945 2.53234 2.64657 3.02652 3.04366 3.10083 3.54995 3.87710 4.45674 4.57986 5.19576 5.37921 5.53095 5.63957 5.74998 5.98053 6.13573 6.19379 6.31676 6.50596 6.54671 6.76370 6.78634 7.00327 7.08281 7.14036 7.22288 7.31650 7.50843 7.63798 7.77017 8.17631 8.41504 8.62102 9.29011 10.07263 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.010444 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.051894 B = 2680.405863 C = 4002.549727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.091 3.909 3 Si 0.898 3.102 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.461 4.461 8 H 0.091 0.909 9 C 0.101 3.899 10 C -0.047 4.047 11 Cl -0.084 7.084 12 C -0.139 4.139 13 C -0.011 4.011 14 N -0.457 5.457 15 C 0.058 3.942 16 C 0.013 3.987 17 C -0.080 4.080 18 C -0.134 4.134 19 C -0.137 4.137 20 C -0.135 4.135 21 C -0.107 4.107 22 H 0.285 0.715 23 H 0.112 0.888 24 H 0.133 0.867 25 H 0.138 0.862 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -1.475 -1.838 3.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.130 4.130 3 Si 0.722 3.278 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.109 0.891 9 C 0.095 3.905 10 C -0.081 4.081 11 Cl -0.055 7.055 12 C -0.160 4.160 13 C -0.169 4.169 14 N -0.165 5.165 15 C -0.082 4.082 16 C 0.012 3.988 17 C -0.098 4.098 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.126 4.126 22 H 0.096 0.904 23 H 0.130 0.870 24 H 0.150 0.850 25 H 0.156 0.844 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.684 -1.943 -2.163 3.957 hybrid contribution 0.042 1.713 0.738 1.866 sum 2.727 -0.230 -1.424 3.085 Atomic orbital electron populations 1.69713 1.07650 1.30120 1.32350 1.25680 0.94528 1.00578 0.92260 0.86428 0.81042 0.80962 0.79396 1.19298 1.20005 1.18174 1.19175 0.98910 0.90286 1.40662 0.89147 1.18113 0.89983 0.93491 0.88884 1.21343 1.06054 0.86705 0.94027 1.98232 1.96522 1.42978 1.67780 1.21621 1.00400 0.93214 1.00778 1.21707 1.04061 0.97297 0.93824 1.67032 1.06379 1.28028 1.15095 1.19779 1.03084 0.90173 0.95135 1.18372 0.94465 0.93648 0.92269 1.21524 0.98164 0.98078 0.92080 1.20995 0.98090 0.98443 0.97703 1.21007 1.00178 0.94977 0.99358 1.20881 1.00584 0.98546 0.95280 1.21217 0.96241 0.98103 0.97016 0.90415 0.87037 0.84957 0.84447 0.86880 0.87284 0.87087 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.80 11.44 55.55 0.64 -18.16 15 2 C 0.09 2.12 3.94 -17.31 -0.07 2.05 15 3 Si 0.90 18.18 29.60 -169.99 -5.03 13.15 15 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 7 C -0.46 -11.22 5.64 -37.91 -0.21 -11.43 15 8 H 0.09 2.20 7.64 -52.49 -0.40 1.80 15 9 C 0.10 2.50 5.20 -106.37 -0.55 1.95 15 10 C -0.05 -1.13 5.98 -38.48 -0.23 -1.36 15 11 Cl -0.08 -1.89 25.50 -51.86 -1.32 -3.21 15 12 C -0.14 -3.02 9.90 -39.45 -0.39 -3.41 15 13 C -0.01 -0.23 11.16 -17.38 -0.19 -0.42 15 14 N -0.46 -10.72 10.13 -9.20 -0.09 -10.81 15 15 C 0.06 1.41 6.43 -82.27 -0.53 0.88 15 16 C 0.01 0.29 5.36 -104.91 -0.56 -0.27 15 17 C -0.08 -1.65 8.28 -39.16 -0.32 -1.97 15 18 C -0.13 -2.35 10.03 -39.64 -0.40 -2.75 15 19 C -0.14 -2.19 10.04 -39.47 -0.40 -2.59 15 20 C -0.13 -2.24 10.03 -39.64 -0.40 -2.63 15 21 C -0.11 -2.07 9.66 -39.16 -0.38 -2.45 15 22 H 0.28 6.42 8.30 -40.82 -0.34 6.08 15 23 H 0.11 2.11 8.06 -52.49 -0.42 1.69 15 24 H 0.13 2.39 8.06 -52.48 -0.42 1.97 15 25 H 0.14 3.07 6.74 -52.49 -0.35 2.72 15 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 15 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 15 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 15 29 H 0.12 2.19 8.06 -52.48 -0.42 1.76 15 LS Contribution 270.68 15.07 4.08 4.08 Total: -1.00 -26.06 270.68 -8.79 -34.86 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -2.43 Total: 4.51 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -4.64 Total: -24.41 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: 0.54 Total: -28.97 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -1.32 Total: -3.21 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.06 -8.79 -34.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396146567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.489 kcal (2) G-P(sol) polarization free energy of solvation -26.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds