Wall clock time and date at job start Mon Mar 30 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48506 * 109.47215 * 269.99975 * 3 2 1 5 5 H 1.48496 * 109.47502 * 29.99762 * 3 2 1 6 6 H 1.48501 * 109.47225 * 150.00025 * 3 2 1 7 7 C 1.40073 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99770 * 161.12820 * 7 2 1 9 9 C 1.40839 * 119.99771 * 341.13014 * 7 2 1 10 10 C 1.41307 * 120.73216 * 312.32680 * 9 7 2 11 11 Cl 1.73597 * 120.87784 * 0.02827 * 10 9 7 12 12 C 1.38067 * 118.24467 * 179.76320 * 10 9 7 13 13 C 1.38776 * 119.64983 * 0.56119 * 12 10 9 14 14 N 1.31760 * 121.51760 * 359.67324 * 13 12 10 15 15 C 1.32537 * 121.90046 * 0.02681 * 14 13 12 16 16 C 1.47824 * 119.92357 * 179.97438 * 15 14 13 17 17 C 1.39673 * 120.14631 * 136.39703 * 16 15 14 18 18 C 1.37925 * 119.84188 * 179.79205 * 17 16 15 19 19 C 1.38394 * 120.15243 * 0.46307 * 18 17 16 20 20 C 1.38394 * 120.30764 * 359.79325 * 19 18 17 21 21 C 1.37919 * 120.14999 * 359.96967 * 20 19 18 22 22 H 0.97002 * 120.00167 * 5.08167 * 1 2 3 23 23 H 1.08000 * 120.17434 * 180.28429 * 12 10 9 24 24 H 1.08004 * 119.24498 * 179.70151 * 13 12 10 25 25 H 1.07996 * 120.07967 * 359.97438 * 17 16 15 26 26 H 1.08001 * 119.92259 * 180.25357 * 18 17 16 27 27 H 1.08004 * 119.84669 * 179.76219 * 19 18 17 28 28 H 1.07995 * 119.92881 * 179.97438 * 20 19 18 29 29 H 1.08005 * 120.07891 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0465 -1.4001 5 1 1.4392 2.6527 0.7000 6 1 3.5393 1.4403 0.7000 7 6 2.0082 -1.2130 0.0005 8 1 3.0446 -1.2382 -0.3020 9 6 1.3608 -2.3998 0.3956 10 6 0.5911 -2.4427 1.5798 11 17 0.4195 -1.0358 2.5823 12 6 -0.0255 -3.6315 1.9157 13 6 0.1339 -4.7422 1.0990 14 7 0.8584 -4.6905 -0.0003 15 6 1.4718 -3.5799 -0.3833 16 6 2.2743 -3.5712 -1.6247 17 6 2.1741 -2.5016 -2.5173 18 6 2.9290 -2.4980 -3.6717 19 6 3.7770 -3.5554 -3.9510 20 6 3.8772 -4.6209 -3.0736 21 6 3.1318 -4.6352 -1.9133 22 1 -0.4850 0.8367 -0.0744 23 1 -0.6250 -3.6979 2.8115 24 1 -0.3474 -5.6701 1.3705 25 1 1.5093 -1.6780 -2.3028 26 1 2.8556 -1.6696 -4.3608 27 1 4.3630 -3.5492 -4.8583 28 1 4.5406 -5.4430 -3.2979 29 1 3.2112 -5.4672 -1.2291 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396146567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:05 Heat of formation + Delta-G solvation = 25.431083 kcal Electronic energy + Delta-G solvation = -16440.862706 eV Core-core repulsion = 13739.383785 eV Total energy + Delta-G solvation = -2701.478921 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70485 -39.17230 -37.00806 -35.74546 -33.33618 -32.51549 -31.54541 -30.18814 -27.46961 -24.48890 -23.68946 -22.79260 -21.82876 -19.30630 -18.12515 -17.38067 -16.77141 -16.68853 -15.82332 -15.46921 -15.28297 -14.54582 -14.37902 -14.15084 -14.00052 -13.57270 -13.37213 -13.24494 -12.97455 -12.57493 -12.47798 -12.09012 -11.94371 -11.75751 -11.35034 -10.86889 -10.18981 -10.05232 -9.66032 -9.50520 -9.02408 -8.63672 -6.40727 0.15703 0.71797 0.78855 1.00582 1.37811 1.41475 1.48787 1.76778 2.20385 2.75087 3.05265 3.46869 3.77128 4.22041 4.30295 4.34990 4.43767 4.52015 4.71114 4.79127 4.89856 4.97281 5.22890 5.24504 5.30067 5.41934 5.58196 5.71286 5.77721 5.92114 6.03901 6.27314 6.39508 6.62925 6.83403 7.52677 8.34109 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.010444 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.051894 B = 2680.405863 C = 4002.549727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.067 3.933 3 Si 0.947 3.053 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.474 4.474 8 H 0.079 0.921 9 C 0.072 3.928 10 C -0.069 4.069 11 Cl -0.079 7.079 12 C -0.143 4.143 13 C -0.009 4.009 14 N -0.475 5.475 15 C 0.046 3.954 16 C -0.022 4.022 17 C -0.099 4.099 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.118 4.118 22 H 0.289 0.711 23 H 0.140 0.860 24 H 0.169 0.831 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -2.000 -3.007 5.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.152 4.152 3 Si 0.769 3.231 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.097 0.903 9 C 0.067 3.933 10 C -0.103 4.103 11 Cl -0.051 7.051 12 C -0.164 4.164 13 C -0.167 4.167 14 N -0.183 5.183 15 C -0.094 4.094 16 C -0.022 4.022 17 C -0.118 4.118 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.136 4.136 22 H 0.099 0.901 23 H 0.157 0.843 24 H 0.186 0.814 25 H 0.127 0.873 26 H 0.156 0.844 27 H 0.170 0.830 28 H 0.166 0.834 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.772 -2.475 -3.336 5.611 hybrid contribution -0.288 1.734 1.057 2.051 sum 3.484 -0.741 -2.279 4.229 Atomic orbital electron populations 1.69754 1.08690 1.30847 1.33725 1.26171 0.94934 1.02583 0.91493 0.85683 0.79723 0.77884 0.79831 1.18146 1.19597 1.18522 1.19103 0.98444 0.90955 1.41846 0.90310 1.18443 0.91012 0.94251 0.89629 1.21650 1.06720 0.87708 0.94263 1.98214 1.96507 1.42935 1.67406 1.21939 1.00246 0.92471 1.01745 1.22381 1.02840 0.98568 0.92919 1.67129 1.07136 1.28032 1.16035 1.20245 1.03081 0.90116 0.95939 1.18512 0.96074 0.95358 0.92291 1.21379 0.99298 0.97351 0.93776 1.21298 0.97327 0.99829 0.96709 1.21481 0.98924 0.93468 1.00271 1.21298 0.99736 0.99680 0.93778 1.21313 0.96630 0.97342 0.98365 0.90075 0.84267 0.81398 0.87288 0.84442 0.82998 0.83383 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.97 11.44 21.85 0.25 -39.72 15 2 C 0.07 3.17 3.94 85.29 0.34 3.50 15 3 Si 0.95 37.45 29.60 68.60 2.03 39.48 15 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 7 C -0.47 -23.84 5.64 23.35 0.13 -23.71 15 8 H 0.08 4.01 7.64 -2.91 -0.02 3.98 15 9 C 0.07 3.68 5.20 -21.00 -0.11 3.57 15 10 C -0.07 -3.36 5.98 22.98 0.14 -3.22 15 11 Cl -0.08 -3.60 25.50 -2.72 -0.07 -3.67 15 12 C -0.14 -6.16 9.90 22.36 0.22 -5.94 15 13 C -0.01 -0.38 11.16 84.83 0.95 0.56 15 14 N -0.48 -22.41 10.13 -183.04 -1.85 -24.26 15 15 C 0.05 2.27 6.43 42.46 0.27 2.54 15 16 C -0.02 -0.96 5.36 -20.05 -0.11 -1.07 15 17 C -0.10 -4.17 8.28 22.54 0.19 -3.98 15 18 C -0.13 -4.44 10.03 22.23 0.22 -4.21 15 19 C -0.12 -3.49 10.04 22.34 0.22 -3.26 15 20 C -0.13 -3.82 10.03 22.23 0.22 -3.60 15 21 C -0.12 -4.47 9.66 22.54 0.22 -4.25 15 22 H 0.29 13.26 8.30 -92.71 -0.77 12.49 15 23 H 0.14 5.06 8.06 -2.91 -0.02 5.04 15 24 H 0.17 5.71 8.06 -2.91 -0.02 5.68 15 25 H 0.11 5.13 6.74 -2.91 -0.02 5.11 15 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 27 H 0.15 3.05 8.06 -2.91 -0.02 3.02 15 28 H 0.15 3.34 8.06 -2.91 -0.02 3.31 15 29 H 0.11 4.25 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -57.38 270.68 4.43 -52.95 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.17 Total: 18.28 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.90 Total: -43.06 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -1.60 Total: -63.99 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 17 Polarization: -3.60 SS G_CDS: -0.07 Total: -3.67 kcal Total: -57.38 4.43 -52.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396146567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.382 kcal (2) G-P(sol) polarization free energy of solvation -57.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds