Wall clock time and date at job start Mon Mar 30 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00239 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00181 * 3 2 1 7 7 C 1.40153 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.40826 * 119.99928 * 0.28166 * 7 2 1 10 10 N 1.33706 * 119.93169 * 359.43938 * 9 7 2 11 11 C 1.31309 * 121.66741 * 179.75156 * 10 9 7 12 12 C 1.38989 * 121.35779 * 0.53550 * 11 10 9 13 13 C 1.38539 * 119.70812 * 359.74120 * 12 11 10 14 14 Cl 1.73601 * 120.77573 * 179.97438 * 13 12 11 15 15 C 1.39828 * 118.44760 * 359.97438 * 13 12 11 16 16 C 1.47803 * 120.66072 * 180.02562 * 15 13 12 17 17 C 1.39701 * 120.15308 * 114.70162 * 16 15 13 18 18 C 1.37911 * 119.84108 * 179.77249 * 17 16 15 19 19 C 1.38406 * 120.15397 * 0.48584 * 18 17 16 20 20 C 1.38408 * 120.31216 * 359.79250 * 19 18 17 21 21 C 1.37910 * 120.15439 * 359.95145 * 20 19 18 22 22 H 0.96996 * 120.00343 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.32094 * 180.25475 * 11 10 9 24 24 H 1.07994 * 120.14622 * 179.71391 * 12 11 10 25 25 H 1.07993 * 120.07386 * 0.02814 * 17 16 15 26 26 H 1.07998 * 119.91878 * 180.23334 * 18 17 16 27 27 H 1.08003 * 119.84229 * 179.76914 * 19 18 17 28 28 H 1.08001 * 119.92376 * 179.97438 * 20 19 18 29 29 H 1.07993 * 120.07776 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8822 2.3964 1.2126 7 6 2.0077 -1.2138 0.0005 8 1 3.0877 -1.2137 0.0001 9 6 1.3036 -2.4333 -0.0049 10 7 -0.0335 -2.4318 0.0007 11 6 -0.7242 -3.5485 -0.0089 12 6 -0.0952 -4.7879 -0.0144 13 6 1.2885 -4.8557 -0.0151 14 17 2.1028 -6.3888 -0.0212 15 6 2.0139 -3.6603 -0.0107 16 6 3.4919 -3.6755 -0.0118 17 6 4.1980 -3.1735 -1.1077 18 6 5.5770 -3.1865 -1.0999 19 6 6.2613 -3.7046 -0.0141 20 6 5.5681 -4.2089 1.0726 21 6 4.1890 -4.1974 1.0806 22 1 -0.4850 0.8400 0.0004 23 1 -1.8032 -3.5030 -0.0080 24 1 -0.6826 -5.6942 -0.0176 25 1 3.6652 -2.7724 -1.9571 26 1 6.1242 -2.7953 -1.9449 27 1 7.3413 -3.7157 -0.0149 28 1 6.1084 -4.6120 1.9164 29 1 3.6494 -4.5908 1.9292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396149468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:19 Heat of formation + Delta-G solvation = 41.838444 kcal Electronic energy + Delta-G solvation = -16335.348421 eV Core-core repulsion = 13634.580977 eV Total energy + Delta-G solvation = -2700.767444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.95655 -37.63381 -35.71041 -33.78475 -32.07430 -30.42144 -30.13851 -28.41333 -25.90607 -22.81501 -21.96798 -21.35532 -20.22503 -17.73213 -16.42284 -15.87713 -15.04714 -14.66055 -14.62417 -14.13173 -13.45633 -12.90568 -12.85390 -12.52295 -12.43410 -11.98531 -11.65654 -11.49452 -11.31798 -11.02803 -10.83420 -10.51821 -10.44323 -10.38919 -9.78132 -9.50824 -8.40535 -8.28042 -8.03506 -7.82647 -7.52251 -6.63246 -4.73392 1.89899 2.06505 2.54805 2.65716 2.99524 3.02780 3.05706 3.07728 3.81695 4.46196 4.53972 5.47155 5.49677 5.55569 5.67956 5.75502 6.01421 6.11148 6.19906 6.30563 6.51810 6.63949 6.68454 6.79605 6.94934 7.08492 7.13470 7.18486 7.28358 7.45304 7.64275 7.70245 8.06455 8.38569 8.68749 9.85388 10.07613 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.010164 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.049301 B = 2754.091216 C = 4204.674064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.406 4.406 8 H 0.093 0.907 9 C 0.273 3.727 10 N -0.480 5.480 11 C 0.145 3.855 12 C -0.318 4.318 13 C 0.061 3.939 14 Cl -0.108 7.108 15 C -0.228 4.228 16 C 0.026 3.974 17 C -0.104 4.104 18 C -0.126 4.126 19 C -0.142 4.142 20 C -0.125 4.125 21 C -0.111 4.111 22 H 0.277 0.723 23 H 0.129 0.871 24 H 0.107 0.893 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 -3.284 -0.143 6.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.161 4.161 3 Si 0.731 3.269 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.436 4.436 8 H 0.111 0.889 9 C 0.150 3.850 10 N -0.192 5.192 11 C -0.024 4.024 12 C -0.342 4.342 13 C 0.029 3.971 14 Cl -0.079 7.079 15 C -0.234 4.234 16 C 0.025 3.975 17 C -0.123 4.123 18 C -0.144 4.144 19 C -0.160 4.160 20 C -0.143 4.143 21 C -0.130 4.130 22 H 0.088 0.912 23 H 0.146 0.854 24 H 0.125 0.875 25 H 0.137 0.863 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.955 -2.419 -0.133 5.516 hybrid contribution 0.728 -0.332 0.028 0.800 sum 5.683 -2.751 -0.106 6.314 Atomic orbital electron populations 1.70104 1.07363 1.28337 1.26468 1.26173 0.94952 1.01457 0.93497 0.86244 0.81161 0.80683 0.78845 1.17967 1.19526 1.19538 1.19766 0.94990 0.88976 1.39831 0.88859 1.18502 0.87691 0.90355 0.88487 1.68738 1.06927 1.26495 1.17006 1.22615 0.99119 0.87807 0.92846 1.21147 0.92065 0.98964 1.22045 1.20923 0.92151 0.83796 1.00226 1.98279 1.80463 1.32145 1.97010 1.19293 0.91519 0.92391 1.20227 1.18522 0.92000 0.94342 0.92618 1.21307 0.93470 0.99219 0.98264 1.20951 0.94347 1.00786 0.98296 1.20965 0.98875 1.01454 0.94744 1.20903 0.94220 1.01035 0.98183 1.21246 0.93652 1.00095 0.97960 0.91199 0.85389 0.87537 0.86263 0.86949 0.87240 0.87085 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.67 11.46 55.56 0.64 -17.03 15 2 C 0.07 1.60 5.50 -17.32 -0.10 1.51 15 3 Si 0.91 17.85 29.56 -169.99 -5.03 12.82 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 7 C -0.41 -10.29 8.54 -37.89 -0.32 -10.61 15 8 H 0.09 2.29 6.06 -52.49 -0.32 1.97 15 9 C 0.27 7.07 6.57 -84.72 -0.56 6.52 15 10 N -0.48 -12.55 7.85 -10.93 -0.09 -12.63 15 11 C 0.15 3.33 11.17 -17.50 -0.20 3.14 15 12 C -0.32 -6.92 9.92 -39.19 -0.39 -7.31 15 13 C 0.06 1.36 6.37 -38.88 -0.25 1.12 15 14 Cl -0.11 -2.07 27.54 -51.86 -1.43 -3.50 15 15 C -0.23 -5.40 5.38 -104.04 -0.56 -5.96 15 16 C 0.03 0.55 3.85 -104.89 -0.40 0.15 15 17 C -0.10 -2.06 8.40 -39.15 -0.33 -2.39 15 18 C -0.13 -2.12 10.03 -39.64 -0.40 -2.52 15 19 C -0.14 -2.25 10.04 -39.46 -0.40 -2.65 15 20 C -0.13 -2.08 10.03 -39.64 -0.40 -2.48 15 21 C -0.11 -2.14 8.97 -39.15 -0.35 -2.50 15 22 H 0.28 6.25 8.29 -40.82 -0.34 5.91 15 23 H 0.13 2.54 8.06 -52.49 -0.42 2.12 15 24 H 0.11 2.06 8.06 -52.49 -0.42 1.64 15 25 H 0.12 2.38 8.06 -52.49 -0.42 1.95 15 26 H 0.11 1.59 8.06 -52.49 -0.42 1.16 15 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 15 28 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 29 H 0.11 2.15 8.06 -52.49 -0.42 1.72 15 LS Contribution 273.25 15.07 4.12 4.12 Total: -1.00 -27.05 273.25 -8.84 -35.88 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.41 Total: 4.32 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -4.64 Total: -23.98 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.55 Total: -29.66 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -1.43 Total: -3.50 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.05 -8.84 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396149468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.722 kcal (2) G-P(sol) polarization free energy of solvation -27.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds