Wall clock time and date at job start Mon Mar 30 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00239 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00181 * 3 2 1 7 7 C 1.40153 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.40826 * 119.99928 * 0.28166 * 7 2 1 10 10 N 1.33706 * 119.93169 * 359.43938 * 9 7 2 11 11 C 1.31309 * 121.66741 * 179.75156 * 10 9 7 12 12 C 1.38989 * 121.35779 * 0.53550 * 11 10 9 13 13 C 1.38539 * 119.70812 * 359.74120 * 12 11 10 14 14 Cl 1.73601 * 120.77573 * 179.97438 * 13 12 11 15 15 C 1.39828 * 118.44760 * 359.97438 * 13 12 11 16 16 C 1.47803 * 120.66072 * 180.02562 * 15 13 12 17 17 C 1.39701 * 120.15308 * 114.70162 * 16 15 13 18 18 C 1.37911 * 119.84108 * 179.77249 * 17 16 15 19 19 C 1.38406 * 120.15397 * 0.48584 * 18 17 16 20 20 C 1.38408 * 120.31216 * 359.79250 * 19 18 17 21 21 C 1.37910 * 120.15439 * 359.95145 * 20 19 18 22 22 H 0.96996 * 120.00343 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.32094 * 180.25475 * 11 10 9 24 24 H 1.07994 * 120.14622 * 179.71391 * 12 11 10 25 25 H 1.07993 * 120.07386 * 0.02814 * 17 16 15 26 26 H 1.07998 * 119.91878 * 180.23334 * 18 17 16 27 27 H 1.08003 * 119.84229 * 179.76914 * 19 18 17 28 28 H 1.08001 * 119.92376 * 179.97438 * 20 19 18 29 29 H 1.07993 * 120.07776 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8822 2.3964 1.2126 7 6 2.0077 -1.2138 0.0005 8 1 3.0877 -1.2137 0.0001 9 6 1.3036 -2.4333 -0.0049 10 7 -0.0335 -2.4318 0.0007 11 6 -0.7242 -3.5485 -0.0089 12 6 -0.0952 -4.7879 -0.0144 13 6 1.2885 -4.8557 -0.0151 14 17 2.1028 -6.3888 -0.0212 15 6 2.0139 -3.6603 -0.0107 16 6 3.4919 -3.6755 -0.0118 17 6 4.1980 -3.1735 -1.1077 18 6 5.5770 -3.1865 -1.0999 19 6 6.2613 -3.7046 -0.0141 20 6 5.5681 -4.2089 1.0726 21 6 4.1890 -4.1974 1.0806 22 1 -0.4850 0.8400 0.0004 23 1 -1.8032 -3.5030 -0.0080 24 1 -0.6826 -5.6942 -0.0176 25 1 3.6652 -2.7724 -1.9571 26 1 6.1242 -2.7953 -1.9449 27 1 7.3413 -3.7157 -0.0149 28 1 6.1084 -4.6120 1.9164 29 1 3.6494 -4.5908 1.9292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396149468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:19 Heat of formation + Delta-G solvation = 29.189170 kcal Electronic energy + Delta-G solvation = -16335.896935 eV Core-core repulsion = 13634.580977 eV Total energy + Delta-G solvation = -2701.315958 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58629 -39.17857 -37.36365 -35.57183 -33.66628 -32.12517 -31.61217 -30.01496 -27.69706 -24.42326 -23.57074 -22.93892 -21.77754 -19.53645 -17.91383 -17.57152 -16.61580 -16.37748 -16.18499 -15.60802 -14.97129 -14.55749 -14.36920 -14.10117 -14.08697 -13.43015 -13.26916 -13.11839 -12.99921 -12.66577 -12.47346 -12.05344 -11.95019 -11.84782 -11.40819 -11.24983 -10.02274 -9.79763 -9.67525 -9.63335 -9.13666 -8.40543 -6.58821 0.39993 0.67274 0.80808 0.96088 1.32663 1.39565 1.48485 1.54104 2.18674 2.74122 3.06112 3.77155 4.02533 4.21765 4.25978 4.32145 4.40420 4.57302 4.74877 4.77052 4.86203 5.04756 5.16783 5.25499 5.29314 5.43642 5.55271 5.72897 5.74596 5.90423 5.96565 6.20355 6.29411 6.57588 6.85268 8.04454 8.33283 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.010164 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.049301 B = 2754.091216 C = 4204.674064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.025 3.975 3 Si 0.980 3.020 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.434 4.434 8 H 0.092 0.908 9 C 0.244 3.756 10 N -0.516 5.516 11 C 0.129 3.871 12 C -0.313 4.313 13 C 0.045 3.955 14 Cl -0.080 7.080 15 C -0.234 4.234 16 C -0.003 4.003 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.126 4.126 22 H 0.283 0.717 23 H 0.153 0.847 24 H 0.132 0.868 25 H 0.103 0.897 26 H 0.142 0.858 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -3.584 -0.005 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.110 0.890 9 C 0.120 3.880 10 N -0.228 5.228 11 C -0.038 4.038 12 C -0.336 4.336 13 C 0.013 3.987 14 Cl -0.051 7.051 15 C -0.240 4.240 16 C -0.003 4.003 17 C -0.143 4.143 18 C -0.141 4.141 19 C -0.150 4.150 20 C -0.139 4.139 21 C -0.144 4.144 22 H 0.094 0.906 23 H 0.170 0.830 24 H 0.150 0.850 25 H 0.121 0.879 26 H 0.160 0.840 27 H 0.168 0.832 28 H 0.162 0.838 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.214 -2.756 0.004 7.722 hybrid contribution 0.076 -0.424 -0.016 0.431 sum 7.289 -3.180 -0.012 7.953 Atomic orbital electron populations 1.70176 1.08837 1.29584 1.27637 1.27017 0.95704 1.04509 0.92579 0.85176 0.79582 0.76123 0.79141 1.17798 1.18671 1.18871 1.19956 0.95057 0.89829 1.41501 0.88996 1.18913 0.88153 0.91712 0.89200 1.68686 1.07520 1.28145 1.18458 1.23066 1.00310 0.87778 0.92691 1.21434 0.92282 0.99507 1.20405 1.21124 0.92633 0.84920 1.00054 1.98271 1.80050 1.29953 1.96875 1.19598 0.93290 0.92182 1.18934 1.18548 0.90908 0.96657 0.94219 1.21302 0.94999 1.00254 0.97712 1.21296 0.93110 0.99932 0.99719 1.21439 1.00902 0.99213 0.93420 1.21286 0.93093 1.00008 0.99496 1.21284 0.95091 1.00781 0.97273 0.90564 0.83011 0.85015 0.87926 0.84030 0.83164 0.83826 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.46 11.46 21.86 0.25 -38.20 15 2 C 0.03 1.26 5.50 85.33 0.47 1.73 15 3 Si 0.98 37.02 29.56 68.60 2.03 39.05 15 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 15 5 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 6 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 7 C -0.43 -22.76 8.54 23.37 0.20 -22.56 15 8 H 0.09 4.67 6.06 -2.91 -0.02 4.65 15 9 C 0.24 13.14 6.57 40.37 0.27 13.40 15 10 N -0.52 -27.93 7.85 -188.49 -1.48 -29.41 15 11 C 0.13 6.02 11.17 84.95 0.95 6.97 15 12 C -0.31 -13.60 9.92 22.52 0.22 -13.37 15 13 C 0.05 2.02 6.37 22.73 0.14 2.17 15 14 Cl -0.08 -3.02 27.54 -2.72 -0.07 -3.10 15 15 C -0.23 -11.37 5.38 -19.49 -0.10 -11.47 15 16 C 0.00 -0.11 3.85 -20.04 -0.08 -0.19 15 17 C -0.12 -4.90 8.40 22.55 0.19 -4.71 15 18 C -0.12 -3.83 10.03 22.23 0.22 -3.60 15 19 C -0.13 -3.64 10.04 22.35 0.22 -3.42 15 20 C -0.12 -3.64 10.03 22.23 0.22 -3.42 15 21 C -0.13 -4.75 8.97 22.55 0.20 -4.55 15 22 H 0.28 13.17 8.29 -92.71 -0.77 12.40 15 23 H 0.15 6.09 8.06 -2.91 -0.02 6.06 15 24 H 0.13 4.93 8.06 -2.91 -0.02 4.91 15 25 H 0.10 4.25 8.06 -2.91 -0.02 4.23 15 26 H 0.14 3.51 8.06 -2.91 -0.02 3.49 15 27 H 0.15 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.14 3.35 8.06 -2.91 -0.02 3.33 15 29 H 0.11 4.01 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -60.08 273.25 5.02 -55.05 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 1.17 Total: 19.65 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 3.13 Total: -43.03 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -1.23 Total: -67.62 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Atomic # 17 Polarization: -3.02 SS G_CDS: -0.07 Total: -3.10 kcal Total: -60.08 5.02 -55.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396149468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.241 kcal (2) G-P(sol) polarization free energy of solvation -60.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds