Wall clock time and date at job start Mon Mar 30 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86802 * 119.99989 * 2 1 4 4 H 1.48498 * 109.46918 * 240.00091 * 3 2 1 5 5 H 1.48506 * 109.46867 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47334 * 119.99744 * 3 2 1 7 7 C 1.40047 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.41323 * 120.00090 * 359.97438 * 7 2 1 10 10 N 1.33692 * 119.79352 * 0.02562 * 9 7 2 11 11 C 1.31443 * 121.80580 * 179.97438 * 10 9 7 12 12 C 1.38571 * 121.18703 * 359.73846 * 11 10 9 13 13 C 1.39930 * 119.45162 * 0.49918 * 12 11 10 14 14 C 1.48365 * 120.82980 * 179.79863 * 13 12 11 15 15 C 1.39353 * 120.11708 * 309.70734 * 14 13 12 16 16 C 1.38015 * 119.87400 * 179.97438 * 15 14 13 17 17 C 1.38319 * 120.12476 * 0.02562 * 16 15 14 18 18 C 1.38325 * 120.24755 * 359.97438 * 17 16 15 19 19 C 1.38016 * 120.12180 * 0.02562 * 18 17 16 20 20 C 1.39531 * 118.34203 * 359.51162 * 13 12 11 21 21 Cl 1.73599 * 120.60158 * 180.23366 * 20 13 12 22 22 H 0.96999 * 120.00459 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.39865 * 180.02562 * 11 10 9 24 24 H 1.08008 * 120.27701 * 180.28530 * 12 11 10 25 25 H 1.08000 * 120.06820 * 0.02562 * 15 14 13 26 26 H 1.07999 * 119.93677 * 179.72571 * 16 15 14 27 27 H 1.07999 * 119.87712 * 180.02562 * 17 16 15 28 28 H 1.08000 * 119.94312 * 180.02562 * 18 17 16 29 29 H 1.07996 * 120.06325 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0077 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0010 9 6 1.3011 -2.4367 0.0016 10 7 -0.0358 -2.4320 0.0016 11 6 -0.7326 -3.5465 0.0021 12 6 -0.1078 -4.7834 -0.0027 13 6 1.2900 -4.8481 0.0024 14 6 1.9906 -6.1559 0.0019 15 6 1.6385 -7.1381 0.9255 16 6 2.2932 -8.3531 0.9202 17 6 3.2975 -8.5965 0.0008 18 6 3.6511 -7.6252 -0.9184 19 6 3.0031 -6.4066 -0.9222 20 6 2.0085 -3.6520 0.0018 21 17 3.7445 -3.6639 0.0018 22 1 -0.4851 0.8400 0.0004 23 1 -1.8114 -3.4973 0.0017 24 1 -0.6948 -5.6900 -0.0069 25 1 0.8543 -6.9494 1.6437 26 1 2.0242 -9.1134 1.6385 27 1 3.8068 -9.5488 -0.0001 28 1 4.4356 -7.8207 -1.6344 29 1 3.2797 -5.6491 -1.6405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396149508.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:41 Heat of formation + Delta-G solvation = 43.212721 kcal Electronic energy + Delta-G solvation = -16007.830596 eV Core-core repulsion = 13307.122745 eV Total energy + Delta-G solvation = -2700.707851 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.08998 -37.82878 -35.19965 -33.89853 -32.23514 -30.61612 -29.92195 -28.62741 -25.85046 -23.04215 -22.34420 -21.19231 -20.53446 -17.67772 -16.43345 -15.70604 -15.05933 -14.79925 -14.72398 -14.22055 -13.86608 -13.14933 -12.86600 -12.61086 -12.43318 -12.25188 -11.53625 -11.28857 -11.16951 -11.01137 -10.81125 -10.63840 -10.50688 -10.37743 -9.53097 -9.49585 -8.82019 -8.56990 -7.82377 -7.76637 -7.59676 -6.57511 -4.67511 1.52053 1.75334 2.55819 2.76097 3.02994 3.06008 3.12530 3.55862 3.86244 4.18134 4.60350 5.18738 5.24225 5.25955 5.46766 5.66714 5.81980 5.89333 6.01980 6.22149 6.31228 6.38202 6.57386 6.68679 6.79428 6.88624 6.97734 7.06183 7.17052 7.35070 7.44238 7.75570 8.12552 8.41717 8.70567 9.87941 10.14432 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.033712 B = 0.006362 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.365573 B = 4400.368736 C = 5063.662350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.067 3.933 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.412 4.412 8 H 0.095 0.905 9 C 0.260 3.740 10 N -0.472 5.472 11 C 0.131 3.869 12 C -0.299 4.299 13 C 0.014 3.986 14 C -0.023 4.023 15 C -0.107 4.107 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.126 4.126 19 C -0.095 4.095 20 C -0.173 4.173 21 Cl -0.105 7.105 22 H 0.277 0.723 23 H 0.126 0.874 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -8.331 -0.076 8.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.160 4.160 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.113 0.887 9 C 0.136 3.864 10 N -0.185 5.185 11 C -0.036 4.036 12 C -0.323 4.323 13 C 0.008 3.992 14 C -0.023 4.023 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.114 4.114 20 C -0.204 4.204 21 Cl -0.077 7.077 22 H 0.088 0.912 23 H 0.144 0.856 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.751 -7.329 -0.077 7.829 hybrid contribution 0.861 -0.195 0.026 0.883 sum 3.612 -7.524 -0.050 8.346 Atomic orbital electron populations 1.70112 1.07328 1.28390 1.26956 1.26136 0.94947 1.01386 0.93500 0.86322 0.80131 0.79914 0.80244 1.18648 1.20061 1.18660 1.19810 0.95090 0.89017 1.40240 0.88708 1.18384 0.87999 0.90497 0.89528 1.68897 1.05809 1.26558 1.17243 1.22544 0.99133 0.88515 0.93425 1.21291 0.92226 0.98331 1.20442 1.18488 0.92921 0.89712 0.98123 1.18922 0.95170 0.93106 0.95122 1.21214 0.99837 0.92906 0.98530 1.20985 0.97192 0.97017 0.99300 1.21058 0.98307 0.99032 0.96501 1.21018 1.00199 0.93818 0.99341 1.21328 0.94944 0.96650 0.98437 1.21839 0.82048 0.94836 1.21672 1.98200 1.13244 1.98651 1.97602 0.91213 0.85622 0.87860 0.86088 0.86501 0.86729 0.86474 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.19 11.46 55.55 0.64 -17.56 15 2 C 0.07 1.66 5.50 -17.34 -0.10 1.56 15 3 Si 0.91 18.24 29.56 -169.99 -5.02 13.22 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 7 C -0.41 -10.77 8.83 -37.73 -0.33 -11.10 15 8 H 0.09 2.37 6.65 -52.49 -0.35 2.02 15 9 C 0.26 6.93 6.55 -84.99 -0.56 6.37 15 10 N -0.47 -12.59 7.84 -11.18 -0.09 -12.68 15 11 C 0.13 3.03 11.17 -17.60 -0.20 2.84 15 12 C -0.30 -6.49 9.66 -38.83 -0.38 -6.86 15 13 C 0.01 0.32 5.49 -104.61 -0.57 -0.25 15 14 C -0.02 -0.44 5.17 -104.90 -0.54 -0.99 15 15 C -0.11 -1.79 9.55 -39.25 -0.37 -2.16 15 16 C -0.13 -1.80 10.03 -39.63 -0.40 -2.20 15 17 C -0.13 -1.77 10.04 -39.52 -0.40 -2.17 15 18 C -0.13 -1.85 10.03 -39.63 -0.40 -2.25 15 19 C -0.10 -1.69 8.28 -39.25 -0.32 -2.01 15 20 C -0.17 -4.19 6.37 -38.20 -0.24 -4.43 15 21 Cl -0.11 -2.27 24.66 -51.86 -1.28 -3.55 15 22 H 0.28 6.43 8.29 -40.82 -0.34 6.09 15 23 H 0.13 2.54 8.06 -52.49 -0.42 2.11 15 24 H 0.10 1.97 8.06 -52.48 -0.42 1.55 15 25 H 0.12 1.93 8.06 -52.49 -0.42 1.51 15 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.11 1.22 8.06 -52.49 -0.42 0.79 15 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 29 H 0.12 2.25 7.23 -52.49 -0.38 1.87 15 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -27.95 272.04 -8.86 -36.81 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.40 Total: 3.30 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -4.81 Total: -23.65 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.55 Total: -30.23 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -1.28 Total: -3.55 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.95 -8.86 -36.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396149508.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.022 kcal (2) G-P(sol) polarization free energy of solvation -27.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds