Wall clock time and date at job start Mon Mar 30 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47465 * 240.00054 * 3 2 1 5 5 H 1.48503 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47060 * 120.00019 * 3 2 1 7 7 C 1.40093 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99971 * 159.27916 * 7 2 1 9 9 C 1.40840 * 119.99979 * 339.26998 * 7 2 1 10 10 C 1.40987 * 120.76611 * 315.74912 * 9 7 2 11 11 Cl 1.73599 * 119.77000 * 359.72943 * 10 9 7 12 12 N 1.31470 * 120.45661 * 179.70517 * 10 9 7 13 13 C 1.32258 * 122.30158 * 0.02562 * 12 10 9 14 14 C 1.38047 * 121.51915 * 359.97438 * 13 12 10 15 15 C 1.39520 * 119.31608 * 0.02562 * 14 13 12 16 16 C 1.47882 * 121.03321 * 180.02562 * 15 14 13 17 17 C 1.39641 * 120.14864 * 129.67285 * 16 15 14 18 18 C 1.37927 * 119.84794 * 179.74729 * 17 16 15 19 19 C 1.38396 * 120.15143 * 0.56025 * 18 17 16 20 20 C 1.38392 * 120.29628 * 359.69530 * 19 18 17 21 21 C 1.37928 * 120.15050 * 0.02562 * 20 19 18 22 22 H 0.96999 * 120.00152 * 4.48325 * 1 2 3 23 23 H 1.08001 * 119.24554 * 179.97438 * 13 12 10 24 24 H 1.08006 * 120.34375 * 180.02562 * 14 13 12 25 25 H 1.07997 * 120.07711 * 0.02562 * 17 16 15 26 26 H 1.07994 * 119.92992 * 180.29921 * 18 17 16 27 27 H 1.07996 * 119.85529 * 179.71922 * 19 18 17 28 28 H 1.08007 * 119.92781 * 180.02562 * 20 19 18 29 29 H 1.08005 * 120.07698 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0955 1.6965 -1.2125 5 1 1.2767 2.7465 0.0006 6 1 3.0955 1.6964 1.2125 7 6 2.0082 -1.2133 -0.0005 8 1 3.0357 -1.2434 -0.3315 9 6 1.3723 -2.3937 0.4307 10 6 0.5787 -2.4010 1.5959 11 17 0.3860 -0.9420 2.5168 12 7 -0.0168 -3.5050 1.9897 13 6 0.0958 -4.6438 1.3267 14 6 0.8507 -4.7367 0.1747 15 6 1.5112 -3.6041 -0.3023 16 6 2.3295 -3.6604 -1.5328 17 6 2.1401 -2.7171 -2.5449 18 6 2.9104 -2.7723 -3.6877 19 6 3.8613 -3.7666 -3.8377 20 6 4.0505 -4.7078 -2.8409 21 6 3.2910 -4.6608 -1.6905 22 1 -0.4850 0.8375 -0.0657 23 1 -0.4146 -5.5215 1.6951 24 1 0.9292 -5.6763 -0.3520 25 1 1.3953 -1.9433 -2.4311 26 1 2.7684 -2.0405 -4.4691 27 1 4.4586 -3.8080 -4.7364 28 1 4.7945 -5.4810 -2.9640 29 1 3.4399 -5.3957 -0.9132 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396152301.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:35 Heat of formation + Delta-G solvation = 25.714357 kcal Electronic energy + Delta-G solvation = -16419.200446 eV Core-core repulsion = 13717.733809 eV Total energy + Delta-G solvation = -2701.466637 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66569 -39.26940 -36.88353 -35.79488 -33.97678 -31.93473 -31.38897 -30.35315 -27.43422 -24.50082 -23.70794 -22.83086 -21.76024 -19.40300 -18.13431 -17.21947 -16.82425 -16.70819 -15.68570 -15.54432 -15.47408 -14.70476 -14.60927 -14.10414 -13.83881 -13.61176 -13.39889 -13.18570 -12.89271 -12.53996 -12.16400 -11.99518 -11.93806 -11.80140 -11.69474 -10.68342 -10.40417 -10.08905 -9.67351 -9.22267 -9.15727 -8.67768 -6.42654 0.23305 0.68215 0.70867 1.05964 1.36730 1.43521 1.46686 1.68088 2.19406 2.75095 3.05116 3.46717 4.01364 4.20660 4.27614 4.29684 4.44155 4.52631 4.71306 4.76361 4.87621 5.00375 5.10079 5.25291 5.31419 5.50855 5.59821 5.72658 5.76904 5.97545 6.02522 6.25519 6.34564 6.62601 6.83145 7.44966 8.31067 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.010210 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.277686 B = 2741.806641 C = 4018.139971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.065 3.935 3 Si 0.947 3.053 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.469 4.469 8 H 0.080 0.920 9 C 0.075 3.925 10 C 0.095 3.905 11 Cl -0.065 7.065 12 N -0.496 5.496 13 C -0.015 4.015 14 C -0.127 4.127 15 C -0.122 4.122 16 C -0.026 4.026 17 C -0.104 4.104 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.127 4.127 22 H 0.290 0.710 23 H 0.165 0.835 24 H 0.144 0.856 25 H 0.099 0.901 26 H 0.134 0.866 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -4.274 -6.102 9.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.155 4.155 3 Si 0.769 3.231 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.098 0.902 9 C 0.069 3.931 10 C -0.074 4.074 11 Cl -0.037 7.037 12 N -0.207 5.207 13 C -0.170 4.170 14 C -0.147 4.147 15 C -0.131 4.131 16 C -0.026 4.026 17 C -0.123 4.123 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.140 4.140 21 C -0.145 4.145 22 H 0.100 0.900 23 H 0.182 0.818 24 H 0.162 0.838 25 H 0.117 0.883 26 H 0.152 0.848 27 H 0.167 0.833 28 H 0.168 0.832 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.037 -3.995 -5.226 8.285 hybrid contribution 0.213 1.124 -0.236 1.168 sum 5.250 -2.871 -5.461 8.101 Atomic orbital electron populations 1.69791 1.08919 1.31075 1.32457 1.26241 0.94894 1.02910 0.91447 0.85729 0.79611 0.77461 0.80328 1.17831 1.19334 1.18771 1.19147 0.99275 0.91358 1.40009 0.90198 1.18292 0.91116 0.94015 0.89637 1.21981 1.04807 0.86937 0.93667 1.98212 1.96510 1.35366 1.73613 1.66267 1.20503 0.99491 1.34421 1.22147 1.04573 0.94412 0.95895 1.22021 0.97357 0.98198 0.97092 1.19484 1.03579 0.94109 0.95882 1.18686 0.95821 0.95797 0.92257 1.21280 0.99602 0.97675 0.93709 1.21288 0.96696 0.99651 0.97309 1.21472 0.98342 0.94741 1.00012 1.21325 0.99677 0.99854 0.93158 1.21415 0.95933 0.98199 0.98954 0.89955 0.81763 0.83812 0.88257 0.84839 0.83297 0.83230 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.51 11.16 21.85 0.24 -40.27 15 2 C 0.06 3.12 3.77 85.30 0.32 3.44 15 3 Si 0.95 37.80 29.61 68.60 2.03 39.83 15 4 H -0.25 -9.66 7.11 99.48 0.71 -8.95 15 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 7 C -0.47 -23.72 6.34 23.36 0.15 -23.57 15 8 H 0.08 4.04 7.78 -2.91 -0.02 4.01 15 9 C 0.07 3.86 5.28 -20.99 -0.11 3.75 15 10 C 0.09 4.97 6.92 85.42 0.59 5.56 15 11 Cl -0.07 -3.25 25.10 -2.72 -0.07 -3.31 15 12 N -0.50 -24.81 10.30 -184.81 -1.90 -26.72 15 13 C -0.02 -0.66 11.15 84.58 0.94 0.29 15 14 C -0.13 -5.18 9.63 22.53 0.22 -4.96 15 15 C -0.12 -5.59 5.54 -19.43 -0.11 -5.70 15 16 C -0.03 -1.03 5.12 -20.05 -0.10 -1.13 15 17 C -0.10 -4.12 8.51 22.54 0.19 -3.93 15 18 C -0.13 -4.10 10.03 22.23 0.22 -3.88 15 19 C -0.13 -3.32 10.04 22.34 0.22 -3.09 15 20 C -0.12 -3.23 10.03 22.23 0.22 -3.01 15 21 C -0.13 -4.14 9.56 22.54 0.22 -3.93 15 22 H 0.29 13.63 8.30 -92.71 -0.77 12.86 15 23 H 0.17 5.69 8.06 -2.91 -0.02 5.67 15 24 H 0.14 4.75 8.06 -2.91 -0.02 4.72 15 25 H 0.10 4.49 7.38 -2.91 -0.02 4.47 15 26 H 0.13 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.15 2.75 8.06 -2.91 -0.02 2.73 15 28 H 0.15 2.85 8.06 -2.91 -0.02 2.83 15 29 H 0.13 3.74 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -58.99 271.23 4.45 -54.54 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.17 Total: 16.10 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 2.98 Total: -40.17 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.66 Total: -66.98 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.07 Total: -3.31 kcal Total: -58.99 4.45 -54.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396152301.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.256 kcal (2) G-P(sol) polarization free energy of solvation -58.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds