Wall clock time and date at job start Mon Mar 30 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48500 * 109.47226 * 274.99019 * 3 2 1 5 5 H 1.48501 * 109.47116 * 34.98760 * 3 2 1 6 6 H 1.48499 * 109.47298 * 154.99107 * 3 2 1 7 7 C 1.40029 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99843 * 186.29082 * 7 2 1 9 9 C 1.41362 * 120.00176 * 6.28136 * 7 2 1 10 10 C 1.40514 * 119.76129 * 173.93925 * 9 7 2 11 11 C 1.39229 * 118.85876 * 180.22709 * 10 9 7 12 12 C 1.48381 * 120.82641 * 179.80099 * 11 10 9 13 13 C 1.39353 * 120.11925 * 129.71988 * 12 11 10 14 14 C 1.38020 * 119.87389 * 179.97438 * 13 12 11 15 15 C 1.38322 * 120.12216 * 359.97438 * 14 13 12 16 16 C 1.38319 * 120.24871 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.11913 * 359.97438 * 16 15 14 18 18 C 1.40184 * 118.35030 * 359.53236 * 11 10 9 19 19 Cl 1.73597 * 120.30585 * 180.22995 * 18 11 10 20 20 C 1.38700 * 119.38701 * 0.24921 * 18 11 10 21 21 N 1.31444 * 121.11724 * 359.97438 * 20 18 11 22 22 H 0.96999 * 119.99932 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.57176 * 0.02562 * 10 9 7 24 24 H 1.07991 * 120.06133 * 0.02562 * 13 12 11 25 25 H 1.07998 * 119.93697 * 179.72133 * 14 13 12 26 26 H 1.08005 * 119.87547 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.94008 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.05782 * 180.02562 * 17 16 15 29 29 H 1.08000 * 119.43743 * 180.02562 * 20 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3837 2.1072 -1.3948 5 1 1.4958 2.6199 0.8028 6 1 3.5879 1.4119 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0827 -1.2157 0.1019 9 6 1.3070 -2.4332 -0.1350 10 6 2.0209 -3.6367 -0.2633 11 6 1.3120 -4.8272 -0.3994 12 6 2.0215 -6.1225 -0.5424 13 6 1.6762 -7.2022 0.2682 14 6 2.3391 -8.4049 0.1306 15 6 3.3442 -8.5399 -0.8100 16 6 3.6912 -7.4715 -1.6172 17 6 3.0348 -6.2642 -1.4882 18 6 -0.0887 -4.7725 -0.3924 19 17 -1.0231 -6.2268 -0.5526 20 6 -0.7212 -3.5456 -0.2567 21 7 -0.0295 -2.4346 -0.1341 22 1 -0.4850 0.8400 0.0004 23 1 3.1009 -3.6378 -0.2597 24 1 0.8908 -7.0982 1.0021 25 1 2.0754 -9.2409 0.7614 26 1 3.8607 -9.4827 -0.9140 27 1 4.4770 -7.5823 -2.3497 28 1 3.3062 -5.4309 -2.1193 29 1 -1.8004 -3.5025 -0.2507 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396152325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:44 Heat of formation + Delta-G solvation = 40.601731 kcal Electronic energy + Delta-G solvation = -15878.219308 eV Core-core repulsion = 13177.398236 eV Total energy + Delta-G solvation = -2700.821072 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.11069 -37.85709 -35.42360 -33.77639 -32.35509 -30.62495 -30.01581 -28.64411 -25.77936 -23.12692 -22.36299 -21.25505 -20.53058 -17.72823 -16.45520 -15.72108 -15.12584 -14.85649 -14.72821 -14.21262 -13.87378 -13.15563 -12.85705 -12.66806 -12.46564 -12.27233 -11.53391 -11.46711 -11.25957 -10.97677 -10.77855 -10.70003 -10.65909 -10.19359 -9.98927 -9.40857 -8.91248 -8.57776 -7.88951 -7.81542 -7.63035 -6.62407 -4.71814 1.51893 1.75259 2.49943 2.76888 2.99973 3.03463 3.04547 3.40162 3.81463 4.17722 4.53481 5.18273 5.24198 5.25663 5.46534 5.64050 5.80951 5.86658 5.91680 6.25310 6.32851 6.43070 6.52960 6.72399 6.79493 6.88823 6.96884 7.08481 7.14350 7.28124 7.38234 7.69272 8.00240 8.41151 8.66635 9.84480 10.10433 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.006003 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.218036 B = 4663.157790 C = 5524.315215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.066 3.934 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.417 4.417 8 H 0.089 0.911 9 C 0.251 3.749 10 C -0.243 4.243 11 C 0.011 3.989 12 C -0.023 4.023 13 C -0.095 4.095 14 C -0.126 4.126 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.106 4.106 18 C -0.216 4.216 19 Cl -0.120 7.120 20 C 0.149 3.851 21 N -0.474 5.474 22 H 0.277 0.723 23 H 0.109 0.891 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -8.097 -0.917 8.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.161 4.161 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.448 4.448 8 H 0.107 0.893 9 C 0.127 3.873 10 C -0.266 4.266 11 C 0.005 3.995 12 C -0.023 4.023 13 C -0.113 4.113 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.144 4.144 17 C -0.125 4.125 18 C -0.248 4.248 19 Cl -0.092 7.092 20 C -0.018 4.018 21 N -0.186 5.186 22 H 0.088 0.912 23 H 0.127 0.873 24 H 0.141 0.859 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.862 -7.232 -0.827 7.821 hybrid contribution 0.665 -0.273 -0.151 0.734 sum 3.527 -7.505 -0.977 8.349 Atomic orbital electron populations 1.70109 1.07325 1.28382 1.26890 1.26134 0.94988 1.01416 0.93567 0.86232 0.80536 0.80428 0.79269 1.19272 1.19909 1.18329 1.19717 0.94956 0.89390 1.40700 0.89336 1.18582 0.88224 0.91845 0.88643 1.21840 0.98891 0.91737 1.14133 1.18472 0.90899 0.91782 0.98357 1.18906 0.94990 0.93045 0.95375 1.21293 0.98894 0.92189 0.98958 1.21008 0.96998 0.97391 0.99057 1.21058 0.98338 0.98510 0.96980 1.20995 1.00220 0.93330 0.99877 1.21251 0.95586 0.97536 0.98080 1.21468 0.90558 0.86840 1.25896 1.98214 1.73914 1.39690 1.97394 1.22543 0.99339 0.86582 0.93366 1.68880 1.07564 1.24537 1.17656 0.91166 0.87272 0.85904 0.86521 0.86732 0.86460 0.85988 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.97 11.49 55.55 0.64 -17.33 15 2 C 0.07 1.59 5.49 -17.34 -0.10 1.49 15 3 Si 0.91 17.66 29.56 -169.99 -5.03 12.63 15 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.52 15 7 C -0.42 -10.57 9.13 -37.72 -0.34 -10.92 15 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 15 9 C 0.25 6.53 6.54 -85.03 -0.56 5.98 15 10 C -0.24 -5.71 9.37 -38.36 -0.36 -6.07 15 11 C 0.01 0.25 5.49 -104.62 -0.57 -0.33 15 12 C -0.02 -0.44 5.16 -104.90 -0.54 -0.98 15 13 C -0.10 -1.64 8.27 -39.25 -0.32 -1.97 15 14 C -0.13 -1.84 10.03 -39.63 -0.40 -2.23 15 15 C -0.13 -1.77 10.04 -39.52 -0.40 -2.17 15 16 C -0.13 -1.81 10.03 -39.63 -0.40 -2.20 15 17 C -0.11 -1.81 9.55 -39.25 -0.37 -2.19 15 18 C -0.22 -4.80 6.34 -38.68 -0.25 -5.04 15 19 Cl -0.12 -2.29 26.20 -51.86 -1.36 -3.65 15 20 C 0.15 3.54 10.97 -17.55 -0.19 3.35 15 21 N -0.47 -12.57 7.87 -11.17 -0.09 -12.66 15 22 H 0.28 6.35 8.29 -40.82 -0.34 6.01 15 23 H 0.11 2.38 8.06 -52.49 -0.42 1.96 15 24 H 0.12 2.14 7.22 -52.49 -0.38 1.76 15 25 H 0.12 1.39 8.06 -52.49 -0.42 0.96 15 26 H 0.11 1.22 8.06 -52.48 -0.42 0.79 15 27 H 0.12 1.36 8.06 -52.49 -0.42 0.93 15 28 H 0.12 2.02 8.06 -52.49 -0.42 1.60 15 29 H 0.13 2.78 8.06 -52.49 -0.42 2.36 15 LS Contribution 274.59 15.07 4.14 4.14 Total: -1.00 -27.24 274.59 -8.96 -36.20 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.46 Total: 3.96 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -4.80 Total: -23.29 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.55 Total: -29.99 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.36 Total: -3.65 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.24 -8.96 -36.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396152325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.803 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds