Wall clock time and date at job start Mon Mar 30 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48500 * 109.47226 * 274.99019 * 3 2 1 5 5 H 1.48501 * 109.47116 * 34.98760 * 3 2 1 6 6 H 1.48499 * 109.47298 * 154.99107 * 3 2 1 7 7 C 1.40029 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99843 * 186.29082 * 7 2 1 9 9 C 1.41362 * 120.00176 * 6.28136 * 7 2 1 10 10 C 1.40514 * 119.76129 * 173.93925 * 9 7 2 11 11 C 1.39229 * 118.85876 * 180.22709 * 10 9 7 12 12 C 1.48381 * 120.82641 * 179.80099 * 11 10 9 13 13 C 1.39353 * 120.11925 * 129.71988 * 12 11 10 14 14 C 1.38020 * 119.87389 * 179.97438 * 13 12 11 15 15 C 1.38322 * 120.12216 * 359.97438 * 14 13 12 16 16 C 1.38319 * 120.24871 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.11913 * 359.97438 * 16 15 14 18 18 C 1.40184 * 118.35030 * 359.53236 * 11 10 9 19 19 Cl 1.73597 * 120.30585 * 180.22995 * 18 11 10 20 20 C 1.38700 * 119.38701 * 0.24921 * 18 11 10 21 21 N 1.31444 * 121.11724 * 359.97438 * 20 18 11 22 22 H 0.96999 * 119.99932 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.57176 * 0.02562 * 10 9 7 24 24 H 1.07991 * 120.06133 * 0.02562 * 13 12 11 25 25 H 1.07998 * 119.93697 * 179.72133 * 14 13 12 26 26 H 1.08005 * 119.87547 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.94008 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.05782 * 180.02562 * 17 16 15 29 29 H 1.08000 * 119.43743 * 180.02562 * 20 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3837 2.1072 -1.3948 5 1 1.4958 2.6199 0.8028 6 1 3.5879 1.4119 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0827 -1.2157 0.1019 9 6 1.3070 -2.4332 -0.1350 10 6 2.0209 -3.6367 -0.2633 11 6 1.3120 -4.8272 -0.3994 12 6 2.0215 -6.1225 -0.5424 13 6 1.6762 -7.2022 0.2682 14 6 2.3391 -8.4049 0.1306 15 6 3.3442 -8.5399 -0.8100 16 6 3.6912 -7.4715 -1.6172 17 6 3.0348 -6.2642 -1.4882 18 6 -0.0887 -4.7725 -0.3924 19 17 -1.0231 -6.2268 -0.5526 20 6 -0.7212 -3.5456 -0.2567 21 7 -0.0295 -2.4346 -0.1341 22 1 -0.4850 0.8400 0.0004 23 1 3.1009 -3.6378 -0.2597 24 1 0.8908 -7.0982 1.0021 25 1 2.0754 -9.2409 0.7614 26 1 3.8607 -9.4827 -0.9140 27 1 4.4770 -7.5823 -2.3497 28 1 3.3062 -5.4309 -2.1193 29 1 -1.8004 -3.5025 -0.2507 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396152325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:44 Heat of formation + Delta-G solvation = 27.700537 kcal Electronic energy + Delta-G solvation = -15878.778746 eV Core-core repulsion = 13177.398236 eV Total energy + Delta-G solvation = -2701.380510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63091 -39.38830 -37.10181 -35.55427 -33.92510 -32.00441 -31.68075 -30.13742 -27.62969 -24.66901 -23.80026 -22.82510 -22.07358 -19.41315 -17.96782 -17.26900 -16.76774 -16.48984 -16.24155 -15.62097 -15.34229 -14.57519 -14.51761 -14.19818 -13.96939 -13.61815 -13.20245 -13.08376 -12.89310 -12.50685 -12.42548 -12.15142 -11.99644 -11.79443 -11.58548 -11.14728 -10.48517 -9.78382 -9.67400 -9.59294 -9.24950 -8.42356 -6.61767 0.16464 0.54949 0.68544 1.10855 1.40771 1.50463 1.55723 1.66280 2.19574 2.70307 2.95925 3.72654 3.77245 4.03893 4.12633 4.17480 4.31666 4.57420 4.63464 4.66400 4.77597 5.01133 5.08501 5.18527 5.26288 5.36411 5.40561 5.58443 5.62770 5.76865 5.92341 6.12316 6.15577 6.57222 6.78850 7.98051 8.34088 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.006003 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.218036 B = 4663.157790 C = 5524.315215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.451 4.451 8 H 0.096 0.904 9 C 0.223 3.777 10 C -0.259 4.259 11 C 0.016 3.984 12 C -0.057 4.057 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.120 4.120 18 C -0.217 4.217 19 Cl -0.090 7.090 20 C 0.132 3.868 21 N -0.508 5.508 22 H 0.284 0.716 23 H 0.117 0.883 24 H 0.113 0.887 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.116 0.884 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -9.936 -1.253 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.200 4.200 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.481 4.481 8 H 0.114 0.886 9 C 0.099 3.901 10 C -0.282 4.282 11 C 0.009 3.991 12 C -0.057 4.057 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.135 4.135 16 C -0.139 4.139 17 C -0.139 4.139 18 C -0.249 4.249 19 Cl -0.062 7.062 20 C -0.034 4.034 21 N -0.221 5.221 22 H 0.095 0.905 23 H 0.135 0.865 24 H 0.131 0.869 25 H 0.165 0.835 26 H 0.173 0.827 27 H 0.167 0.833 28 H 0.134 0.866 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.356 -9.103 -1.162 10.159 hybrid contribution 0.173 0.031 -0.069 0.189 sum 4.530 -9.072 -1.231 10.215 Atomic orbital electron populations 1.70197 1.09050 1.29741 1.27903 1.27078 0.95757 1.04809 0.92403 0.85052 0.79145 0.75319 0.79394 1.18757 1.19142 1.17556 1.20091 0.95561 0.90247 1.42210 0.88588 1.19003 0.88581 0.93197 0.89308 1.21931 0.99322 0.91865 1.15092 1.18818 0.91060 0.93020 0.96172 1.18868 0.96747 0.92196 0.97864 1.21309 0.99522 0.92978 0.98874 1.21372 0.96458 0.96946 0.99376 1.21556 0.97167 0.99690 0.95133 1.21369 1.00114 0.92193 1.00260 1.21343 0.95658 0.98906 0.97944 1.21566 0.91237 0.87621 1.24498 1.98208 1.73104 1.37690 1.97240 1.22818 0.99979 0.86936 0.93630 1.68815 1.08166 1.26034 1.19116 0.90542 0.86512 0.86885 0.83490 0.82691 0.83282 0.86601 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.36 11.49 21.84 0.25 -39.11 15 2 C 0.02 1.11 5.49 85.29 0.47 1.58 15 3 Si 0.99 36.64 29.56 68.60 2.03 38.67 15 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 5 H -0.27 -9.44 7.11 99.48 0.71 -8.74 15 6 H -0.25 -8.90 7.11 99.48 0.71 -8.20 15 7 C -0.45 -23.72 9.13 23.47 0.21 -23.50 15 8 H 0.10 4.67 7.85 -2.91 -0.02 4.65 15 9 C 0.22 12.16 6.54 40.19 0.26 12.42 15 10 C -0.26 -12.69 9.37 23.06 0.22 -12.48 15 11 C 0.02 0.71 5.49 -19.86 -0.11 0.60 15 12 C -0.06 -2.14 5.16 -20.04 -0.10 -2.24 15 13 C -0.11 -3.60 8.27 22.49 0.19 -3.41 15 14 C -0.12 -3.15 10.03 22.24 0.22 -2.93 15 15 C -0.12 -2.63 10.04 22.31 0.22 -2.41 15 16 C -0.12 -3.05 10.03 22.24 0.22 -2.83 15 17 C -0.12 -3.96 9.55 22.48 0.21 -3.74 15 18 C -0.22 -9.85 6.34 22.85 0.14 -9.71 15 19 Cl -0.09 -3.41 26.20 -2.72 -0.07 -3.48 15 20 C 0.13 6.52 10.97 84.86 0.93 7.45 15 21 N -0.51 -28.21 7.87 -189.25 -1.49 -29.70 15 22 H 0.28 13.40 8.29 -92.71 -0.77 12.63 15 23 H 0.12 5.32 8.06 -2.91 -0.02 5.30 15 24 H 0.11 3.87 7.22 -2.92 -0.02 3.85 15 25 H 0.15 2.82 8.06 -2.91 -0.02 2.80 15 26 H 0.16 2.28 8.06 -2.91 -0.02 2.26 15 27 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 28 H 0.12 3.83 8.06 -2.91 -0.02 3.81 15 29 H 0.14 6.30 8.06 -2.91 -0.02 6.28 15 Total: -1.00 -61.14 274.59 4.98 -56.16 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.17 Total: 18.66 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.10 Total: -41.20 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -1.24 Total: -68.80 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.07 Total: -3.48 kcal Total: -61.14 4.98 -56.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396152325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.856 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds