Wall clock time and date at job start Mon Mar 30 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46534 * 299.99816 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99759 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41407 * 120.00131 * 0.27899 * 7 2 1 10 10 C 1.40454 * 119.76915 * 179.71819 * 9 7 2 11 11 C 1.39342 * 118.86597 * 179.97438 * 10 9 7 12 12 C 1.48392 * 120.81515 * 180.02562 * 11 10 9 13 13 C 1.39340 * 120.11509 * 359.71935 * 12 11 10 14 14 C 1.38021 * 119.87439 * 179.74982 * 13 12 11 15 15 C 1.38322 * 120.11987 * 0.55443 * 14 13 12 16 16 C 1.38326 * 120.24348 * 359.69979 * 15 14 13 17 17 C 1.38016 * 120.12313 * 0.02562 * 16 15 14 18 18 C 1.39978 * 118.37299 * 0.02562 * 11 10 9 19 19 C 1.38693 * 119.41352 * 0.02562 * 18 11 10 20 20 Cl 1.73597 * 119.44713 * 180.02562 * 19 18 11 21 21 N 1.31572 * 121.11097 * 359.73176 * 19 18 11 22 22 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.56842 * 359.96081 * 10 9 7 24 24 H 1.08001 * 120.06955 * 0.02934 * 13 12 11 25 25 H 1.08002 * 119.94507 * 180.29957 * 14 13 12 26 26 H 1.07997 * 119.87980 * 179.72095 * 15 14 13 27 27 H 1.07998 * 119.93700 * 179.97438 * 16 15 14 28 28 H 1.08001 * 120.06038 * 180.02562 * 17 16 15 29 29 H 1.08006 * 120.29109 * 180.02562 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3006 -2.4374 -0.0049 10 6 2.0079 -3.6509 -0.0103 11 6 1.2923 -4.8465 -0.0150 12 6 1.9954 -6.1532 -0.0203 13 6 3.3881 -6.1978 -0.0264 14 6 4.0370 -7.4159 -0.0261 15 6 3.3074 -8.5910 -0.0312 16 6 1.9247 -8.5526 -0.0305 17 6 1.2654 -7.3401 -0.0251 18 6 -0.1061 -4.7848 -0.0147 19 6 -0.7333 -3.5478 -0.0103 20 17 -2.4676 -3.4702 -0.0092 21 7 -0.0361 -2.4320 -0.0011 22 1 -0.4849 0.8400 -0.0004 23 1 3.0878 -3.6572 -0.0110 24 1 3.9588 -5.2809 -0.0269 25 1 5.1164 -7.4517 -0.0259 26 1 3.8191 -9.5421 -0.0355 27 1 1.3599 -9.4732 -0.0349 28 1 0.1858 -7.3113 -0.0241 29 1 -0.6915 -5.6924 -0.0179 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396154862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:47 Heat of formation + Delta-G solvation = 28.029878 kcal Electronic energy + Delta-G solvation = -15756.099140 eV Core-core repulsion = 13054.732911 eV Total energy + Delta-G solvation = -2701.366229 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68557 -39.38488 -37.24554 -35.63628 -33.90973 -32.23517 -31.49640 -30.13386 -27.77344 -24.66577 -24.10319 -22.41516 -22.01748 -19.42492 -18.15466 -17.39222 -16.54511 -16.46225 -16.10278 -15.48054 -15.20856 -14.87377 -14.70948 -14.17914 -13.94568 -13.73905 -13.05029 -13.02753 -12.85819 -12.56563 -12.35230 -12.07005 -11.96289 -11.77849 -11.56969 -11.35451 -10.71397 -9.80963 -9.74906 -9.58888 -9.09653 -8.38542 -6.63028 -0.02696 0.54718 0.66119 1.26530 1.31719 1.40720 1.53763 1.56757 2.19896 2.69732 3.05984 3.76826 3.79556 4.01411 4.16043 4.28542 4.43084 4.55217 4.64332 4.68038 4.78667 4.94774 5.06778 5.20061 5.24968 5.37846 5.47671 5.58307 5.63583 5.84700 5.99448 6.12165 6.15876 6.58985 6.78274 7.88451 8.36548 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.006434 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.448177 B = 4350.793078 C = 5738.392677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.021 3.979 3 Si 0.991 3.009 4 H -0.249 1.249 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.453 4.453 8 H 0.100 0.900 9 C 0.237 3.763 10 C -0.269 4.269 11 C 0.016 3.984 12 C -0.059 4.059 13 C -0.123 4.123 14 C -0.122 4.122 15 C -0.119 4.119 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.290 4.290 19 C 0.196 3.804 20 Cl -0.074 7.074 21 N -0.517 5.517 22 H 0.281 0.719 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.149 0.851 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.126 0.874 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 -10.628 -0.065 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.202 4.202 3 Si 0.811 3.189 4 H -0.172 1.172 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.484 4.484 8 H 0.118 0.882 9 C 0.113 3.887 10 C -0.291 4.291 11 C 0.010 3.990 12 C -0.059 4.059 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.137 4.137 16 C -0.139 4.139 17 C -0.139 4.139 18 C -0.314 4.314 19 C 0.025 3.975 20 Cl -0.046 7.046 21 N -0.233 5.233 22 H 0.092 0.908 23 H 0.142 0.858 24 H 0.140 0.860 25 H 0.167 0.833 26 H 0.173 0.827 27 H 0.169 0.831 28 H 0.143 0.857 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.483 -9.666 -0.056 10.655 hybrid contribution 0.015 0.315 -0.007 0.316 sum 4.498 -9.350 -0.063 10.376 Atomic orbital electron populations 1.70239 1.09048 1.29443 1.28250 1.27084 0.95721 1.04854 0.92499 0.85023 0.79561 0.75617 0.78728 1.17195 1.19229 1.19212 1.20112 0.95168 0.89853 1.43253 0.88179 1.18782 0.86698 0.93658 0.89588 1.22072 0.99845 0.92181 1.15039 1.18892 0.92234 0.92605 0.95303 1.18939 0.93925 0.91613 1.01438 1.21453 0.93211 0.99410 1.00033 1.21410 1.01248 0.91614 0.99688 1.21608 0.94037 0.99197 0.98865 1.21421 0.95312 0.97553 0.99613 1.21454 1.00450 0.92062 0.99968 1.21177 0.94006 0.95947 1.20251 1.21778 0.86170 0.91194 0.98399 1.98270 1.10600 1.98842 1.96872 1.67819 1.08263 1.27185 1.20039 0.90815 0.85755 0.86030 0.83309 0.82710 0.83143 0.85655 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.51 11.46 21.84 0.25 -40.26 15 2 C 0.02 1.06 5.50 85.29 0.47 1.53 15 3 Si 0.99 37.33 29.56 68.60 2.03 39.36 15 4 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 6 H -0.27 -9.78 7.11 99.48 0.71 -9.07 15 7 C -0.45 -23.96 9.14 23.49 0.21 -23.74 15 8 H 0.10 4.84 7.85 -2.91 -0.02 4.81 15 9 C 0.24 13.03 6.55 40.18 0.26 13.29 15 10 C -0.27 -13.00 9.22 23.08 0.21 -12.79 15 11 C 0.02 0.70 5.90 -19.88 -0.12 0.58 15 12 C -0.06 -2.13 5.88 -20.04 -0.12 -2.25 15 13 C -0.12 -3.85 9.45 22.48 0.21 -3.64 15 14 C -0.12 -2.89 10.03 22.24 0.22 -2.67 15 15 C -0.12 -2.47 10.04 22.31 0.22 -2.25 15 16 C -0.12 -2.80 10.03 22.24 0.22 -2.57 15 17 C -0.12 -3.68 9.45 22.48 0.21 -3.47 15 18 C -0.29 -13.13 9.28 22.80 0.21 -12.91 15 19 C 0.20 9.91 7.27 84.84 0.62 10.53 15 20 Cl -0.07 -3.23 29.10 -2.72 -0.08 -3.31 15 21 N -0.52 -29.33 7.82 -180.25 -1.41 -30.74 15 22 H 0.28 13.77 8.29 -92.71 -0.77 13.00 15 23 H 0.12 5.42 6.33 -2.91 -0.02 5.40 15 24 H 0.12 3.80 6.29 -2.91 -0.02 3.78 15 25 H 0.15 2.59 8.06 -2.91 -0.02 2.57 15 26 H 0.16 2.06 8.06 -2.91 -0.02 2.03 15 27 H 0.15 2.48 8.06 -2.91 -0.02 2.45 15 28 H 0.13 3.66 6.29 -2.91 -0.02 3.64 15 29 H 0.13 5.16 6.32 -2.91 -0.02 5.15 15 Total: -1.00 -63.59 272.54 4.82 -58.77 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 1.19 Total: 16.55 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 2.85 Total: -40.37 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.16 Total: -71.00 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Atomic # 17 Polarization: -3.23 SS G_CDS: -0.08 Total: -3.31 kcal Total: -63.59 4.82 -58.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396154862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.798 kcal (2) G-P(sol) polarization free energy of solvation -63.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds