Wall clock time and date at job start Mon Mar 30 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46859 * 299.99793 * 3 2 1 6 6 H 1.48506 * 109.47366 * 59.99327 * 3 2 1 7 7 C 1.40023 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99527 * 162.01323 * 7 2 1 9 9 C 1.41012 * 120.00571 * 342.01000 * 7 2 1 10 10 C 1.40960 * 120.56461 * 335.67639 * 9 7 2 11 11 N 1.31239 * 120.40880 * 179.97438 * 10 9 7 12 12 C 1.33074 * 121.76444 * 0.02562 * 11 10 9 13 13 C 1.47987 * 119.43932 * 179.97438 * 12 11 10 14 14 C 1.39601 * 120.14230 * 179.72246 * 13 12 11 15 15 C 1.37937 * 119.84986 * 179.76521 * 14 13 12 16 16 C 1.38386 * 120.14485 * 0.50890 * 15 14 13 17 17 C 1.38388 * 120.29282 * 359.74110 * 16 15 14 18 18 C 1.37939 * 120.14422 * 359.97438 * 17 16 15 19 19 C 1.39749 * 121.12523 * 359.97438 * 12 11 10 20 20 C 1.36831 * 119.45238 * 0.02562 * 19 12 11 21 21 Cl 1.73599 * 120.80798 * 179.97438 * 20 19 12 22 22 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.79543 * 359.70188 * 10 9 7 24 24 H 1.08004 * 120.07160 * 0.02562 * 14 13 12 25 25 H 1.08001 * 119.92692 * 180.25104 * 15 14 13 26 26 H 1.08000 * 119.85464 * 179.72294 * 16 15 14 27 27 H 1.07993 * 119.92705 * 180.02562 * 17 16 15 28 28 H 1.08001 * 120.07525 * 180.02562 * 18 17 16 29 29 H 1.07999 * 120.27856 * 180.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3463 0.0006 5 1 1.8833 2.3964 -1.2126 6 1 1.8832 2.3965 1.2124 7 6 2.0081 -1.2127 0.0005 8 1 3.0485 -1.2357 -0.2883 9 6 1.3547 -2.4039 0.3782 10 6 0.2219 -2.3654 1.2162 11 7 -0.3841 -3.4759 1.5654 12 6 0.0404 -4.6664 1.1490 13 6 -0.6817 -5.8859 1.5749 14 6 -0.2526 -7.1419 1.1421 15 6 -0.9272 -8.2749 1.5466 16 6 -2.0334 -8.1679 2.3712 17 6 -2.4671 -6.9255 2.7996 18 6 -1.7980 -5.7849 2.4071 19 6 1.1565 -4.7847 0.3163 20 6 1.8248 -3.6574 -0.0772 21 17 3.2157 -3.7635 -1.1105 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1470 -1.4165 1.5767 24 1 0.6083 -7.2264 0.4953 25 1 -0.5938 -9.2475 1.2158 26 1 -2.5608 -9.0578 2.6815 27 1 -3.3309 -6.8489 3.4433 28 1 -2.1372 -4.8160 2.7424 29 1 1.4889 -5.7577 -0.0138 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396157236.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:49 Heat of formation + Delta-G solvation = 30.552040 kcal Electronic energy + Delta-G solvation = -15775.763301 eV Core-core repulsion = 13074.506441 eV Total energy + Delta-G solvation = -2701.256860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10595 -37.83018 -35.39119 -34.41299 -31.58599 -31.13430 -30.21678 -28.93954 -25.65074 -22.80772 -22.58445 -21.09807 -20.35750 -17.80327 -16.82248 -15.85979 -15.38922 -14.95007 -14.31568 -13.78778 -13.74297 -13.13608 -13.07139 -12.78923 -12.42227 -12.19164 -11.86637 -11.51637 -11.27637 -11.13543 -10.96181 -10.67108 -10.59384 -10.44326 -9.71034 -9.62703 -8.77089 -8.46450 -8.28230 -8.16849 -7.41592 -7.23021 -4.70866 1.50767 1.91371 2.55273 2.61335 2.89011 2.95406 3.01687 3.36047 3.64921 4.15718 4.54932 5.26864 5.35526 5.38622 5.41319 5.61191 5.87851 5.95343 6.06034 6.34155 6.43749 6.51863 6.58480 6.74290 6.84651 6.95523 6.97616 7.02617 7.27509 7.41529 7.55198 7.70626 8.02109 8.30335 8.34784 9.44576 9.70153 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.005783 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.115692 B = 4840.472403 C = 5740.024586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.412 4.412 8 H 0.096 0.904 9 C 0.071 3.929 10 C 0.059 3.941 11 N -0.452 5.452 12 C -0.008 4.008 13 C 0.019 3.981 14 C -0.136 4.136 15 C -0.118 4.118 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.096 4.096 20 C -0.118 4.118 21 Cl -0.105 7.105 22 H 0.292 0.708 23 H 0.159 0.841 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 -5.121 1.610 5.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.152 4.152 3 Si 0.742 3.258 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.440 4.440 8 H 0.114 0.886 9 C 0.065 3.935 10 C -0.111 4.111 11 N -0.160 5.160 12 C -0.137 4.137 13 C 0.018 3.982 14 C -0.155 4.155 15 C -0.136 4.136 16 C -0.170 4.170 17 C -0.139 4.139 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.151 4.151 21 Cl -0.076 7.076 22 H 0.104 0.896 23 H 0.176 0.824 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.147 0.853 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.070 -5.011 2.025 5.510 hybrid contribution 1.182 0.670 -0.809 1.581 sum 0.111 -4.341 1.216 4.510 Atomic orbital electron populations 1.69759 1.07929 1.30761 1.30209 1.26170 0.94912 1.02290 0.91797 0.86048 0.81114 0.79537 0.79103 1.17815 1.19422 1.19082 1.19834 0.98845 0.90514 1.34854 0.88621 1.18498 0.92941 0.91454 0.90605 1.22963 0.95294 0.95097 0.97784 1.67087 1.29478 0.98038 1.21381 1.18711 0.98037 0.90695 1.06299 1.18627 0.93704 0.91306 0.94558 1.21182 1.00845 0.91858 1.01645 1.20896 0.96250 0.97769 0.98705 1.20983 0.98197 0.97116 1.00669 1.21021 0.99790 0.92707 1.00360 1.21280 0.95241 0.98654 0.97809 1.21091 0.95669 0.96903 0.97970 1.20623 0.95192 0.95063 1.04199 1.98226 1.43313 1.98435 1.67660 0.89648 0.82434 0.86352 0.86833 0.87108 0.86821 0.85301 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.67 10.97 55.55 0.61 -17.06 15 2 C 0.07 1.59 5.14 -17.32 -0.09 1.50 15 3 Si 0.92 16.72 29.60 -169.99 -5.03 11.69 15 4 H -0.25 -4.64 7.11 56.52 0.40 -4.24 15 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 6 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 7 C -0.41 -9.91 8.57 -37.86 -0.32 -10.23 15 8 H 0.10 2.24 7.18 -52.48 -0.38 1.86 15 9 C 0.07 1.77 5.59 -106.61 -0.60 1.18 15 10 C 0.06 1.47 9.88 -16.77 -0.17 1.30 15 11 N -0.45 -11.09 9.39 -9.12 -0.09 -11.18 15 12 C -0.01 -0.18 6.74 -82.77 -0.56 -0.74 15 13 C 0.02 0.38 5.88 -104.88 -0.62 -0.23 15 14 C -0.14 -2.38 9.42 -39.18 -0.37 -2.75 15 15 C -0.12 -1.78 10.03 -39.64 -0.40 -2.17 15 16 C -0.15 -2.20 10.04 -39.47 -0.40 -2.59 15 17 C -0.12 -1.89 10.03 -39.64 -0.40 -2.29 15 18 C -0.11 -2.08 9.57 -39.18 -0.38 -2.46 15 19 C -0.10 -2.13 9.19 -39.53 -0.36 -2.50 15 20 C -0.12 -2.78 6.38 -38.89 -0.25 -3.03 15 21 Cl -0.10 -2.18 27.74 -51.86 -1.44 -3.61 15 22 H 0.29 6.02 8.30 -40.82 -0.34 5.68 15 23 H 0.16 3.95 6.17 -52.48 -0.32 3.62 15 24 H 0.12 1.92 6.15 -52.48 -0.32 1.60 15 25 H 0.11 1.38 8.06 -52.49 -0.42 0.96 15 26 H 0.11 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.13 2.48 7.52 -52.49 -0.39 2.08 15 29 H 0.11 2.20 6.15 -52.49 -0.32 1.88 15 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -25.60 271.13 -8.90 -34.50 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.14 Total: 6.58 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -4.90 Total: -25.02 kcal Atomic # 7 Polarization: -28.76 SS G_CDS: 0.52 Total: -28.24 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.44 Total: -3.61 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.60 -8.90 -34.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396157236.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.055 kcal (2) G-P(sol) polarization free energy of solvation -25.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds