Wall clock time and date at job start Mon Mar 30 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46859 * 299.99793 * 3 2 1 6 6 H 1.48506 * 109.47366 * 59.99327 * 3 2 1 7 7 C 1.40023 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99527 * 162.01323 * 7 2 1 9 9 C 1.41012 * 120.00571 * 342.01000 * 7 2 1 10 10 C 1.40960 * 120.56461 * 335.67639 * 9 7 2 11 11 N 1.31239 * 120.40880 * 179.97438 * 10 9 7 12 12 C 1.33074 * 121.76444 * 0.02562 * 11 10 9 13 13 C 1.47987 * 119.43932 * 179.97438 * 12 11 10 14 14 C 1.39601 * 120.14230 * 179.72246 * 13 12 11 15 15 C 1.37937 * 119.84986 * 179.76521 * 14 13 12 16 16 C 1.38386 * 120.14485 * 0.50890 * 15 14 13 17 17 C 1.38388 * 120.29282 * 359.74110 * 16 15 14 18 18 C 1.37939 * 120.14422 * 359.97438 * 17 16 15 19 19 C 1.39749 * 121.12523 * 359.97438 * 12 11 10 20 20 C 1.36831 * 119.45238 * 0.02562 * 19 12 11 21 21 Cl 1.73599 * 120.80798 * 179.97438 * 20 19 12 22 22 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.79543 * 359.70188 * 10 9 7 24 24 H 1.08004 * 120.07160 * 0.02562 * 14 13 12 25 25 H 1.08001 * 119.92692 * 180.25104 * 15 14 13 26 26 H 1.08000 * 119.85464 * 179.72294 * 16 15 14 27 27 H 1.07993 * 119.92705 * 180.02562 * 17 16 15 28 28 H 1.08001 * 120.07525 * 180.02562 * 18 17 16 29 29 H 1.07999 * 120.27856 * 180.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3463 0.0006 5 1 1.8833 2.3964 -1.2126 6 1 1.8832 2.3965 1.2124 7 6 2.0081 -1.2127 0.0005 8 1 3.0485 -1.2357 -0.2883 9 6 1.3547 -2.4039 0.3782 10 6 0.2219 -2.3654 1.2162 11 7 -0.3841 -3.4759 1.5654 12 6 0.0404 -4.6664 1.1490 13 6 -0.6817 -5.8859 1.5749 14 6 -0.2526 -7.1419 1.1421 15 6 -0.9272 -8.2749 1.5466 16 6 -2.0334 -8.1679 2.3712 17 6 -2.4671 -6.9255 2.7996 18 6 -1.7980 -5.7849 2.4071 19 6 1.1565 -4.7847 0.3163 20 6 1.8248 -3.6574 -0.0772 21 17 3.2157 -3.7635 -1.1105 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1470 -1.4165 1.5767 24 1 0.6083 -7.2264 0.4953 25 1 -0.5938 -9.2475 1.2158 26 1 -2.5608 -9.0578 2.6815 27 1 -3.3309 -6.8489 3.4433 28 1 -2.1372 -4.8160 2.7424 29 1 1.4889 -5.7577 -0.0138 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396157236.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:48 Heat of formation + Delta-G solvation = 18.881301 kcal Electronic energy + Delta-G solvation = -15776.269382 eV Core-core repulsion = 13074.506441 eV Total energy + Delta-G solvation = -2701.762941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72366 -39.30776 -37.12535 -36.11908 -33.14457 -32.84498 -31.58243 -30.53863 -27.33939 -24.41816 -24.16014 -22.59354 -21.89573 -19.56410 -18.28725 -17.52921 -16.79948 -16.62315 -15.82871 -15.29255 -15.16614 -14.85287 -14.60314 -14.19817 -13.98721 -13.68160 -13.43765 -13.14276 -12.85947 -12.77976 -12.66172 -12.08384 -11.96589 -11.79180 -11.39542 -11.28989 -10.33759 -10.07686 -9.96483 -9.74134 -9.05394 -8.89869 -6.50748 0.03055 0.62600 0.74743 1.03252 1.38476 1.52352 1.55601 1.58183 2.13440 2.55908 3.06843 3.61361 3.74942 4.03181 4.24207 4.26302 4.42620 4.46938 4.68750 4.79720 4.86299 5.02608 5.05768 5.13764 5.22930 5.37541 5.47676 5.70457 5.70829 5.91916 5.92924 6.20371 6.25589 6.52153 6.56697 7.61954 8.06120 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.005783 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.115692 B = 4840.472403 C = 5740.024586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.258 1.258 7 C -0.439 4.439 8 H 0.095 0.905 9 C 0.045 3.955 10 C 0.034 3.966 11 N -0.469 5.469 12 C -0.012 4.012 13 C -0.022 4.022 14 C -0.140 4.140 15 C -0.114 4.114 16 C -0.135 4.135 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.102 4.102 20 C -0.131 4.131 21 Cl -0.084 7.084 22 H 0.301 0.699 23 H 0.148 0.852 24 H 0.126 0.874 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.142 0.858 28 H 0.109 0.891 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -7.105 1.730 7.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.113 0.887 9 C 0.039 3.961 10 C -0.134 4.134 11 N -0.177 5.177 12 C -0.143 4.143 13 C -0.022 4.022 14 C -0.159 4.159 15 C -0.132 4.132 16 C -0.153 4.153 17 C -0.138 4.138 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.164 4.164 21 Cl -0.055 7.055 22 H 0.113 0.887 23 H 0.165 0.835 24 H 0.144 0.856 25 H 0.169 0.831 26 H 0.170 0.830 27 H 0.160 0.840 28 H 0.128 0.872 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.207 -6.988 2.146 7.409 hybrid contribution 1.111 1.013 -0.806 1.706 sum -0.095 -5.976 1.340 6.125 Atomic orbital electron populations 1.69787 1.09325 1.32177 1.30573 1.26995 0.95524 1.05101 0.90701 0.85015 0.79498 0.75123 0.79440 1.17777 1.18633 1.18267 1.19995 0.98969 0.91323 1.36414 0.88683 1.18742 0.93409 0.92642 0.91263 1.22852 0.96419 0.95074 0.99088 1.67089 1.29994 0.98617 1.21988 1.19338 0.98200 0.91265 1.05509 1.18731 0.95148 0.91265 0.97088 1.21377 1.01328 0.91578 1.01578 1.21345 0.95703 0.98405 0.97763 1.21511 0.97349 0.97906 0.98550 1.21348 1.00147 0.92153 1.00193 1.21301 0.95728 0.99279 0.98519 1.21349 0.95408 0.97718 0.97783 1.20855 0.96017 0.95093 1.04452 1.98213 1.42045 1.98371 1.66909 0.88709 0.83518 0.85580 0.83111 0.83011 0.84013 0.87242 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.07 10.97 21.84 0.24 -37.83 15 2 C 0.04 1.67 5.14 85.28 0.44 2.11 15 3 Si 0.99 34.47 29.60 68.60 2.03 36.50 15 4 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15 5 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 6 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 7 C -0.44 -21.80 8.57 23.38 0.20 -21.60 15 8 H 0.10 4.57 7.18 -2.91 -0.02 4.54 15 9 C 0.05 2.35 5.59 -21.15 -0.12 2.24 15 10 C 0.03 1.79 9.88 85.45 0.84 2.63 15 11 N -0.47 -24.16 9.39 -182.77 -1.72 -25.88 15 12 C -0.01 -0.57 6.74 41.91 0.28 -0.29 15 13 C -0.02 -0.87 5.88 -20.03 -0.12 -0.98 15 14 C -0.14 -4.60 9.42 22.53 0.21 -4.38 15 15 C -0.11 -2.95 10.03 22.23 0.22 -2.73 15 16 C -0.14 -3.28 10.04 22.34 0.22 -3.06 15 17 C -0.12 -3.44 10.03 22.23 0.22 -3.21 15 18 C -0.13 -4.82 9.57 22.53 0.22 -4.60 15 19 C -0.10 -4.62 9.19 22.31 0.20 -4.41 15 20 C -0.13 -6.31 6.38 22.72 0.14 -6.17 15 21 Cl -0.08 -3.48 27.74 -2.72 -0.08 -3.55 15 22 H 0.30 12.76 8.30 -92.71 -0.77 11.99 15 23 H 0.15 7.88 6.17 -2.91 -0.02 7.87 15 24 H 0.13 3.84 6.15 -2.91 -0.02 3.82 15 25 H 0.15 2.79 8.06 -2.91 -0.02 2.77 15 26 H 0.15 2.53 8.06 -2.91 -0.02 2.50 15 27 H 0.14 3.18 8.06 -2.91 -0.02 3.15 15 28 H 0.11 4.39 7.52 -2.91 -0.02 4.37 15 29 H 0.14 5.31 6.15 -2.91 -0.02 5.29 15 Total: -1.00 -57.54 271.13 4.64 -52.90 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.18 Total: 22.34 kcal Atomic # 6 Polarization: -47.45 SS G_CDS: 2.98 Total: -44.47 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -1.48 Total: -63.71 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.08 Total: -3.55 kcal Total: -57.54 4.64 -52.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396157236.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.783 kcal (2) G-P(sol) polarization free energy of solvation -57.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds