Wall clock time and date at job start Mon Mar 30 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35600 * 117.00403 * 2 1 4 4 C 1.38793 * 120.14292 * 0.02562 * 3 2 1 5 5 C 1.37188 * 120.78919 * 179.97438 * 4 3 2 6 6 C 1.41972 * 121.07268 * 0.02562 * 5 4 3 7 7 C 1.40450 * 128.54612 * 179.97438 * 6 5 4 8 8 C 1.33878 * 115.55414 * 180.02562 * 7 6 5 9 9 C 1.43205 * 124.70815 * 179.97438 * 8 7 6 10 10 N 8.72913 * 131.15379 * 359.96694 * 2 1 3 11 11 S 1.75480 * 110.57698 * 0.02562 * 8 7 6 12 12 C 1.39633 * 118.85873 * 359.97438 * 6 5 4 13 13 C 1.40951 * 120.14490 * 179.72577 * 3 2 1 14 14 C 1.40757 * 120.14629 * 359.97438 * 13 3 2 15 15 H 1.08001 * 119.99680 * 38.60617 * 14 13 3 16 16 C 1.39875 * 120.00041 * 218.60488 * 14 13 3 17 17 N 1.30935 * 120.00283 * 20.94934 * 16 14 13 18 18 Si 1.86797 * 119.99798 * 200.95077 * 16 14 13 19 19 H 1.48502 * 109.47288 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47040 * 119.99837 * 18 16 14 21 21 H 1.48495 * 109.47297 * 240.00135 * 18 16 14 22 22 H 1.09000 * 109.47406 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46394 * 299.99975 * 1 2 3 24 24 H 1.09005 * 109.46941 * 59.99423 * 1 2 3 25 25 H 1.08002 * 119.60395 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.46332 * 179.97438 * 5 4 3 27 27 H 1.07998 * 122.21943 * 0.02562 * 7 6 5 28 28 H 0.96994 * 120.00192 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2918 2.3741 0.0005 5 6 1.9009 3.6034 0.0011 6 6 3.3158 3.7201 0.0005 7 6 4.0977 4.8868 0.0005 8 6 5.4226 4.6940 -0.0006 9 6 6.3990 5.7416 -0.0014 10 7 7.1735 6.5726 -0.0038 11 16 5.7964 2.9795 -0.0024 12 6 4.0880 2.5567 0.0000 13 6 3.4521 1.2854 0.0058 14 6 4.2246 0.1088 0.0122 15 1 3.9124 -0.7453 -0.5705 16 6 5.3965 0.0457 0.7732 17 7 5.5734 0.8727 1.7728 18 14 6.7092 -1.2185 0.3635 19 1 6.2710 -2.0272 -0.8024 20 1 7.9797 -0.5238 0.0338 21 1 6.9210 -2.1091 1.5327 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 0.2135 2.3129 0.0014 26 1 1.2941 4.4968 0.0011 27 1 3.6593 5.8738 0.0012 28 1 6.3859 0.8287 2.3008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396190255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:15 Heat of formation + Delta-G solvation = 27.649056 kcal Electronic energy + Delta-G solvation = -16185.067243 eV Core-core repulsion = 13485.728207 eV Total energy + Delta-G solvation = -2699.339036 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.02591 -37.36832 -36.16949 -34.42930 -33.00462 -30.24289 -28.34029 -26.70317 -25.44931 -23.18592 -21.87903 -19.89081 -18.45079 -17.11919 -16.84670 -15.53714 -15.01395 -14.80483 -14.77905 -14.30725 -13.61396 -13.49352 -12.99245 -12.58993 -12.47715 -12.34876 -12.26575 -11.73180 -11.45900 -11.26835 -11.10924 -10.96552 -10.59907 -10.54191 -10.02935 -9.64726 -9.48308 -9.04645 -8.44994 -7.20055 -7.06552 -6.34103 -4.49950 1.19976 2.14990 2.45758 2.84769 3.05452 3.10175 3.11322 3.13938 3.45579 3.83944 3.87938 4.32335 4.42564 4.47976 5.11817 5.60529 5.69859 5.74196 5.86176 5.92920 6.07391 6.29093 6.41726 6.54033 6.87152 7.06692 7.20132 7.32251 7.47636 7.71739 7.86795 8.05140 8.35684 8.57679 8.78282 10.01627 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.010844 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.490876 B = 2581.569107 C = 4246.833355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.041 3.959 4 C -0.166 4.166 5 C -0.151 4.151 6 C -0.092 4.092 7 C -0.042 4.042 8 C -0.188 4.188 9 C 0.301 3.699 10 N -0.446 5.446 11 S 0.194 5.806 12 C -0.135 4.135 13 C 0.127 3.873 14 C -0.451 4.451 15 H 0.090 0.910 16 C 0.066 3.934 17 N -0.774 5.774 18 Si 0.898 3.102 19 H -0.257 1.257 20 H -0.267 1.267 21 H -0.272 1.272 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -0.204 -2.048 5.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.218 6.218 3 C -0.009 4.009 4 C -0.186 4.186 5 C -0.173 4.173 6 C -0.099 4.099 7 C -0.081 4.081 8 C -0.307 4.307 9 C -0.014 4.014 10 N -0.125 5.125 11 S 0.463 5.537 12 C -0.253 4.253 13 C 0.121 3.879 14 C -0.480 4.480 15 H 0.108 0.892 16 C -0.152 4.152 17 N -0.400 5.400 18 Si 0.721 3.279 19 H -0.181 1.181 20 H -0.192 1.192 21 H -0.198 1.198 22 H 0.103 0.897 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.147 0.853 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.076 0.143 -1.860 2.791 hybrid contribution -1.377 0.140 0.130 1.391 sum -3.453 0.283 -1.730 3.873 Atomic orbital electron populations 1.22808 0.81211 1.02166 1.00131 1.85981 1.18527 1.27567 1.89725 1.18933 0.91647 0.82916 1.07357 1.20526 0.98075 0.92530 1.07474 1.20055 0.91252 0.95955 1.10075 1.17750 0.94109 0.90852 1.07153 1.19970 0.90827 0.98860 0.98430 1.19990 0.93325 0.97635 1.19728 1.24685 0.92352 0.92000 0.92355 1.81168 1.09676 1.10254 1.11376 1.84091 1.05426 0.89846 1.74318 1.22500 0.94582 0.95922 1.12305 1.16032 0.87733 0.90975 0.93187 1.19270 1.04606 0.99657 1.24516 0.89157 1.25859 0.98703 0.96972 0.93672 1.69818 1.26197 1.32675 1.11340 0.86360 0.80532 0.81025 0.79950 1.18063 1.19191 1.19770 0.89712 0.93859 0.93957 0.87517 0.87871 0.85334 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 15 2 O -0.30 -6.35 9.91 -18.50 -0.18 -6.54 15 3 C 0.04 0.92 6.72 -38.35 -0.26 0.66 15 4 C -0.17 -3.26 8.97 -39.76 -0.36 -3.61 15 5 C -0.15 -2.92 10.06 -38.53 -0.39 -3.31 15 6 C -0.09 -1.93 5.86 -107.11 -0.63 -2.56 15 7 C -0.04 -0.78 10.01 -40.28 -0.40 -1.19 15 8 C -0.19 -3.64 6.18 -39.19 -0.24 -3.88 15 9 C 0.30 5.68 15.76 -22.47 -0.35 5.32 15 10 N -0.45 -8.70 18.54 41.84 0.78 -7.92 15 11 S 0.19 4.15 19.85 -107.50 -2.13 2.01 15 12 C -0.13 -3.12 5.75 -37.56 -0.22 -3.34 15 13 C 0.13 3.11 5.38 -106.42 -0.57 2.54 15 14 C -0.45 -11.17 8.43 -38.02 -0.32 -11.49 15 15 H 0.09 2.23 7.90 -52.49 -0.41 1.82 15 16 C 0.07 1.56 4.26 -17.32 -0.07 1.49 15 17 N -0.77 -18.62 10.69 55.55 0.59 -18.03 15 18 Si 0.90 17.92 29.61 -169.99 -5.03 12.88 15 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.04 0.60 7.66 -51.93 -0.40 0.20 15 24 H 0.04 0.56 7.66 -51.93 -0.40 0.17 15 25 H 0.11 1.75 6.26 -52.49 -0.33 1.42 15 26 H 0.10 1.68 8.06 -52.49 -0.42 1.26 15 27 H 0.13 2.00 8.06 -52.49 -0.42 1.57 15 28 H 0.29 6.38 8.30 -40.82 -0.34 6.04 15 LS Contribution 269.13 15.07 4.06 4.06 Total: -1.00 -26.17 269.13 -6.69 -32.86 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -1.94 Total: -1.43 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.82 Total: -17.89 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 1.37 Total: -25.95 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.18 Total: -6.54 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.13 Total: 2.01 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.17 -6.69 -32.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.506 kcal (2) G-P(sol) polarization free energy of solvation -26.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds