Wall clock time and date at job start Mon Mar 30 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35698 * 116.99800 * 2 1 4 4 C 1.38392 * 120.01398 * 5.13818 * 3 2 1 5 5 C 1.37747 * 121.07391 * 179.72199 * 4 3 2 6 6 C 1.39963 * 121.63580 * 0.27402 * 5 4 3 7 7 S 1.76085 * 130.26366 * 180.02562 * 6 5 4 8 8 C 1.75496 * 91.62980 * 179.97438 * 7 6 5 9 9 C 1.43208 * 124.82772 * 179.97438 * 8 7 6 10 10 N 8.49574 * 142.00095 * 356.60762 * 2 1 3 11 11 C 1.35517 * 110.34366 * 0.02562 * 8 7 6 12 12 C 1.39342 * 115.35100 * 359.97438 * 11 8 7 13 13 C 1.40888 * 120.01110 * 185.40296 * 3 2 1 14 14 C 1.40194 * 120.43926 * 0.02562 * 13 3 2 15 15 H 1.07998 * 120.00333 * 136.16940 * 14 13 3 16 16 C 1.40145 * 119.99435 * 316.18115 * 14 13 3 17 17 N 1.30790 * 119.99941 * 158.71204 * 16 14 13 18 18 Si 1.86799 * 120.00179 * 338.70551 * 16 14 13 19 19 H 1.48507 * 109.46650 * 95.56409 * 18 16 14 20 20 H 1.48500 * 109.47151 * 215.56245 * 18 16 14 21 21 H 1.48495 * 109.47047 * 335.56599 * 18 16 14 22 22 H 1.09000 * 109.46858 * 294.30381 * 1 2 3 23 23 H 1.08997 * 109.47095 * 54.30595 * 1 2 3 24 24 H 1.09005 * 109.46877 * 174.30232 * 1 2 3 25 25 H 1.07999 * 119.45902 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.18181 * 180.24923 * 5 4 3 27 27 H 1.08004 * 122.32371 * 180.02562 * 11 8 7 28 28 H 0.96997 * 119.99614 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2958 2.3677 0.1073 5 6 1.8989 3.6061 0.1153 6 6 3.2874 3.7472 0.0102 7 16 4.2861 5.1974 -0.0034 8 6 5.7524 4.2466 -0.1643 9 6 7.0748 4.7902 -0.2458 10 7 8.1238 5.2212 -0.3095 11 6 5.4552 2.9249 -0.2016 12 6 4.0999 2.6153 -0.1071 13 6 3.4471 1.2856 -0.1149 14 6 4.2151 0.1184 -0.2302 15 1 5.0181 0.0693 -0.9507 16 6 3.9404 -0.9848 0.5892 17 7 4.3372 -2.1790 0.2328 18 14 3.0076 -0.7497 2.1905 19 1 1.5646 -1.0201 1.9670 20 1 3.5347 -1.6889 3.2129 21 1 3.1819 0.6467 2.6644 22 1 -0.3633 0.4230 0.9366 23 1 -0.3633 0.5996 -0.8346 24 1 -0.3633 -1.0226 -0.1020 25 1 0.2212 2.2996 0.1902 26 1 1.2850 4.4902 0.2045 27 1 6.2161 2.1644 -0.2970 28 1 4.1467 -2.9426 0.7999 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396190371.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:41 Heat of formation + Delta-G solvation = 34.601794 kcal Electronic energy + Delta-G solvation = -16257.334126 eV Core-core repulsion = 13558.296583 eV Total energy + Delta-G solvation = -2699.037543 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.23363 -37.33531 -36.04579 -34.10737 -33.52525 -30.82077 -28.46640 -26.83028 -25.54981 -23.34369 -21.76337 -19.89096 -18.56489 -17.72483 -16.84432 -15.83360 -15.39152 -15.01902 -14.71869 -14.27875 -13.70826 -13.57587 -13.18709 -12.63852 -12.59906 -12.42697 -12.29914 -11.88575 -11.62255 -11.29102 -11.19179 -11.17813 -10.76679 -10.34219 -10.16177 -9.82747 -9.64700 -9.31824 -8.39423 -7.51422 -7.32829 -6.93357 -4.67508 1.01818 1.98733 2.24904 2.60889 2.78451 2.99741 3.05605 3.17901 3.50634 3.83524 3.85891 4.17609 4.19715 4.64037 4.87290 5.51670 5.63010 5.63650 5.77793 5.89250 6.04617 6.12664 6.40419 6.49600 6.62508 6.80734 7.01993 7.18313 7.30286 7.42071 7.86175 7.90543 8.00302 8.25105 8.50811 9.64284 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.008227 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.679363 B = 3402.514680 C = 4254.290870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.301 6.301 3 C 0.000 4.000 4 C -0.120 4.120 5 C -0.196 4.196 6 C -0.072 4.072 7 S 0.071 5.929 8 C -0.226 4.226 9 C 0.305 3.695 10 N -0.458 5.458 11 C 0.026 3.974 12 C -0.172 4.172 13 C 0.118 3.882 14 C -0.395 4.395 15 H 0.105 0.895 16 C 0.097 3.903 17 N -0.768 5.768 18 Si 0.918 3.082 19 H -0.246 1.246 20 H -0.288 1.288 21 H -0.250 1.250 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 2.335 1.678 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C -0.047 4.047 4 C -0.142 4.142 5 C -0.222 4.222 6 C -0.188 4.188 7 S 0.334 5.666 8 C -0.344 4.344 9 C -0.008 4.008 10 N -0.137 5.137 11 C -0.008 4.008 12 C -0.178 4.178 13 C 0.111 3.889 14 C -0.420 4.420 15 H 0.123 0.877 16 C -0.129 4.129 17 N -0.389 5.389 18 Si 0.743 3.257 19 H -0.171 1.171 20 H -0.215 1.215 21 H -0.173 1.173 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.158 0.842 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.967 4.103 1.654 7.428 hybrid contribution -0.786 -1.581 0.489 1.833 sum -6.754 2.522 2.144 7.521 Atomic orbital electron populations 1.22794 0.81101 1.02443 1.00181 1.86120 1.18810 1.26873 1.89815 1.18758 0.91739 0.83696 1.10489 1.20566 0.98307 0.92063 1.03251 1.19324 0.90714 0.96200 1.16004 1.22455 0.97359 0.94633 1.04370 1.83504 0.94827 1.07641 1.80655 1.18948 0.90066 0.95963 1.29458 1.24498 0.91416 0.92917 0.91948 1.81171 1.10994 1.08408 1.13151 1.20118 0.96099 0.93233 0.91393 1.18562 0.91039 0.92433 1.15757 1.17782 0.88304 0.90901 0.91875 1.19442 1.13605 0.93587 1.15374 0.87736 1.26290 0.92552 0.93401 1.00641 1.69670 1.33131 1.00007 1.36066 0.86118 0.81002 0.80368 0.78251 1.17106 1.21502 1.17328 0.93993 0.93403 0.89659 0.87050 0.87791 0.84238 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.46 101.05 0.96 1.41 15 2 O -0.30 -6.08 5.98 -18.80 -0.11 -6.19 15 3 C 0.00 0.00 5.20 -38.52 -0.20 -0.20 15 4 C -0.12 -2.23 8.96 -39.70 -0.36 -2.59 15 5 C -0.20 -3.65 10.00 -39.12 -0.39 -4.04 15 6 C -0.07 -1.43 6.48 -38.34 -0.25 -1.68 15 7 S 0.07 1.26 23.23 -107.50 -2.50 -1.24 15 8 C -0.23 -4.25 6.24 -38.63 -0.24 -4.49 15 9 C 0.31 5.78 15.78 -22.47 -0.35 5.42 15 10 N -0.46 -9.06 18.54 41.83 0.78 -8.28 15 11 C 0.03 0.51 9.71 -40.14 -0.39 0.12 15 12 C -0.17 -3.67 6.00 -104.83 -0.63 -4.30 15 13 C 0.12 2.66 4.85 -104.10 -0.50 2.15 15 14 C -0.39 -9.34 9.03 -38.13 -0.34 -9.69 15 15 H 0.10 2.55 8.06 -52.49 -0.42 2.13 15 16 C 0.10 2.24 4.85 -17.28 -0.08 2.15 15 17 N -0.77 -18.09 13.93 55.56 0.77 -17.32 15 18 Si 0.92 19.00 24.83 -169.99 -4.22 14.78 15 19 H -0.25 -4.85 5.98 56.52 0.34 -4.51 15 20 H -0.29 -5.76 7.11 56.52 0.40 -5.36 15 21 H -0.25 -5.42 7.11 56.52 0.40 -5.02 15 22 H 0.04 0.57 7.75 -51.93 -0.40 0.17 15 23 H 0.05 0.64 7.55 -51.93 -0.39 0.24 15 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.11 1.73 6.25 -52.49 -0.33 1.40 15 26 H 0.10 1.68 8.06 -52.49 -0.42 1.26 15 27 H 0.14 2.60 8.03 -52.48 -0.42 2.18 15 28 H 0.29 6.23 8.29 -40.82 -0.34 5.89 15 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -24.85 265.40 -6.08 -30.93 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -2.01 Total: -0.94 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.79 Total: -15.74 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 1.55 Total: -25.60 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.11 Total: -6.19 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.22 Total: 14.78 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.50 Total: -1.24 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -24.85 -6.08 -30.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190371.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.530 kcal (2) G-P(sol) polarization free energy of solvation -24.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds