Wall clock time and date at job start Mon Mar 30 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35698 * 116.99800 * 2 1 4 4 C 1.38392 * 120.01398 * 5.13818 * 3 2 1 5 5 C 1.37747 * 121.07391 * 179.72199 * 4 3 2 6 6 C 1.39963 * 121.63580 * 0.27402 * 5 4 3 7 7 S 1.76085 * 130.26366 * 180.02562 * 6 5 4 8 8 C 1.75496 * 91.62980 * 179.97438 * 7 6 5 9 9 C 1.43208 * 124.82772 * 179.97438 * 8 7 6 10 10 N 8.49574 * 142.00095 * 356.60762 * 2 1 3 11 11 C 1.35517 * 110.34366 * 0.02562 * 8 7 6 12 12 C 1.39342 * 115.35100 * 359.97438 * 11 8 7 13 13 C 1.40888 * 120.01110 * 185.40296 * 3 2 1 14 14 C 1.40194 * 120.43926 * 0.02562 * 13 3 2 15 15 H 1.07998 * 120.00333 * 136.16940 * 14 13 3 16 16 C 1.40145 * 119.99435 * 316.18115 * 14 13 3 17 17 N 1.30790 * 119.99941 * 158.71204 * 16 14 13 18 18 Si 1.86799 * 120.00179 * 338.70551 * 16 14 13 19 19 H 1.48507 * 109.46650 * 95.56409 * 18 16 14 20 20 H 1.48500 * 109.47151 * 215.56245 * 18 16 14 21 21 H 1.48495 * 109.47047 * 335.56599 * 18 16 14 22 22 H 1.09000 * 109.46858 * 294.30381 * 1 2 3 23 23 H 1.08997 * 109.47095 * 54.30595 * 1 2 3 24 24 H 1.09005 * 109.46877 * 174.30232 * 1 2 3 25 25 H 1.07999 * 119.45902 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.18181 * 180.24923 * 5 4 3 27 27 H 1.08004 * 122.32371 * 180.02562 * 11 8 7 28 28 H 0.96997 * 119.99614 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2958 2.3677 0.1073 5 6 1.8989 3.6061 0.1153 6 6 3.2874 3.7472 0.0102 7 16 4.2861 5.1974 -0.0034 8 6 5.7524 4.2466 -0.1643 9 6 7.0748 4.7902 -0.2458 10 7 8.1238 5.2212 -0.3095 11 6 5.4552 2.9249 -0.2016 12 6 4.0999 2.6153 -0.1071 13 6 3.4471 1.2856 -0.1149 14 6 4.2151 0.1184 -0.2302 15 1 5.0181 0.0693 -0.9507 16 6 3.9404 -0.9848 0.5892 17 7 4.3372 -2.1790 0.2328 18 14 3.0076 -0.7497 2.1905 19 1 1.5646 -1.0201 1.9670 20 1 3.5347 -1.6889 3.2129 21 1 3.1819 0.6467 2.6644 22 1 -0.3633 0.4230 0.9366 23 1 -0.3633 0.5996 -0.8346 24 1 -0.3633 -1.0226 -0.1020 25 1 0.2212 2.2996 0.1902 26 1 1.2850 4.4902 0.2045 27 1 6.2161 2.1644 -0.2970 28 1 4.1467 -2.9426 0.7999 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396190371.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:41 Heat of formation + Delta-G solvation = 22.060204 kcal Electronic energy + Delta-G solvation = -16257.877970 eV Core-core repulsion = 13558.296583 eV Total energy + Delta-G solvation = -2699.581387 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73387 -38.86249 -37.63118 -35.70528 -35.07677 -32.39431 -30.01789 -28.07562 -27.13821 -24.89946 -23.32297 -21.42276 -20.15661 -19.29884 -18.31190 -17.36949 -16.91306 -16.45829 -16.19991 -15.77836 -15.24065 -15.13597 -14.81554 -14.18422 -14.07803 -13.96839 -13.82504 -13.45062 -13.17455 -12.84183 -12.56684 -12.56039 -12.30704 -11.90640 -11.70298 -11.31774 -11.18188 -10.89576 -9.93467 -9.04777 -8.95588 -8.45483 -6.35079 -0.56679 0.45388 0.67467 1.05496 1.19665 1.36944 1.43637 1.53935 1.90811 2.21333 2.29248 2.55945 2.79861 3.07243 3.26458 4.16517 4.29248 4.43265 4.50131 4.56196 4.63284 4.82629 4.85346 4.94909 5.06750 5.28422 5.46450 5.60329 5.73190 5.84775 6.20707 6.34650 6.42171 6.62645 7.04001 8.08638 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.008227 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.679363 B = 3402.514680 C = 4254.290870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C -0.010 4.010 4 C -0.116 4.116 5 C -0.177 4.177 6 C -0.103 4.103 7 S 0.139 5.861 8 C -0.214 4.214 9 C 0.314 3.686 10 N -0.464 5.464 11 C 0.010 3.990 12 C -0.181 4.181 13 C 0.100 3.900 14 C -0.444 4.444 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.818 5.818 18 Si 0.956 3.044 19 H -0.229 1.229 20 H -0.284 1.284 21 H -0.267 1.267 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.150 0.850 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.789 5.055 2.298 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C -0.057 4.057 4 C -0.137 4.137 5 C -0.203 4.203 6 C -0.219 4.219 7 S 0.403 5.597 8 C -0.332 4.332 9 C 0.001 3.999 10 N -0.143 5.143 11 C -0.025 4.025 12 C -0.186 4.186 13 C 0.094 3.906 14 C -0.471 4.471 15 H 0.090 0.910 16 C -0.145 4.145 17 N -0.442 5.442 18 Si 0.779 3.221 19 H -0.152 1.152 20 H -0.211 1.211 21 H -0.191 1.191 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.168 0.832 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.195 6.845 2.270 10.916 hybrid contribution -0.129 -1.979 0.239 1.997 sum -8.323 4.867 2.509 9.963 Atomic orbital electron populations 1.23158 0.78505 1.04302 1.01783 1.86089 1.21574 1.26811 1.89846 1.18922 0.91399 0.84950 1.10457 1.21016 1.00217 0.91102 1.01392 1.19877 0.90498 0.97554 1.12360 1.22831 0.98375 0.95431 1.05269 1.83276 0.92286 1.04986 1.79190 1.19179 0.90956 0.96118 1.26930 1.24417 0.91256 0.92544 0.91726 1.81191 1.11165 1.08990 1.12986 1.20188 0.96063 0.93821 0.92413 1.18843 0.91887 0.92909 1.15001 1.18017 0.89496 0.90891 0.92190 1.19206 1.14849 0.95434 1.17645 0.91017 1.26705 0.92851 0.93001 1.01950 1.69698 1.36498 1.00578 1.37445 0.85581 0.81326 0.79060 0.76107 1.15242 1.21060 1.19124 0.92269 0.91630 0.88012 0.83234 0.84256 0.84410 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.46 113.37 1.07 1.53 15 2 O -0.33 -12.87 5.98 -90.18 -0.54 -13.41 15 3 C -0.01 -0.42 5.20 22.96 0.12 -0.30 15 4 C -0.12 -3.87 8.96 22.19 0.20 -3.67 15 5 C -0.18 -5.82 10.00 22.57 0.23 -5.60 15 6 C -0.10 -3.78 6.48 23.07 0.15 -3.63 15 7 S 0.14 4.40 23.23 -56.49 -1.31 3.08 15 8 C -0.21 -7.62 6.24 22.89 0.14 -7.48 15 9 C 0.31 11.28 15.78 88.34 1.39 12.67 15 10 N -0.46 -17.50 18.54 19.00 0.35 -17.15 15 11 C 0.01 0.39 9.71 21.91 0.21 0.61 15 12 C -0.18 -7.60 6.00 -20.00 -0.12 -7.72 15 13 C 0.10 4.58 4.85 -19.53 -0.09 4.49 15 14 C -0.44 -22.42 9.03 23.21 0.21 -22.21 15 15 H 0.07 3.89 8.06 -2.91 -0.02 3.86 15 16 C 0.07 3.66 4.85 85.31 0.41 4.07 15 17 N -0.82 -41.12 13.93 21.87 0.30 -40.81 15 18 Si 0.96 39.65 24.83 68.60 1.70 41.35 15 19 H -0.23 -8.64 5.98 99.48 0.59 -8.04 15 20 H -0.28 -11.27 7.11 99.48 0.71 -10.57 15 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 22 H 0.06 1.37 7.75 -2.39 -0.02 1.35 15 23 H 0.07 1.51 7.55 -2.39 -0.02 1.49 15 24 H 0.10 2.36 8.14 -2.38 -0.02 2.34 15 25 H 0.15 3.82 6.25 -2.91 -0.02 3.80 15 26 H 0.14 3.63 8.06 -2.91 -0.02 3.60 15 27 H 0.14 5.38 8.03 -2.91 -0.02 5.36 15 28 H 0.30 13.45 8.29 -92.71 -0.77 12.68 15 Total: -1.00 -54.68 265.40 5.53 -49.16 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.10 Total: 5.02 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.92 Total: -27.24 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.66 Total: -57.97 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.54 Total: -13.41 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 1.70 Total: 41.35 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.31 Total: 3.08 kcal Total: -54.68 5.53 -49.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190371.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.218 kcal (2) G-P(sol) polarization free energy of solvation -54.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds