Wall clock time and date at job start Mon Mar 30 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35945 * 116.99984 * 2 1 4 4 C 1.38486 * 119.72899 * 180.02562 * 3 2 1 5 5 C 1.40837 * 120.79176 * 180.02562 * 4 3 2 6 6 C 1.46433 * 129.62504 * 179.97438 * 5 4 3 7 7 C 1.43199 * 123.02140 * 359.96527 * 6 5 4 8 8 N 5.98184 * 170.52689 * 0.09737 * 2 1 3 9 9 C 1.33846 * 113.95582 * 179.97438 * 6 5 4 10 10 S 1.70028 * 112.19632 * 0.02562 * 9 6 5 11 11 C 1.39176 * 119.34785 * 359.93271 * 5 4 3 12 12 C 1.42217 * 119.62742 * 0.02910 * 11 5 4 13 13 C 1.40931 * 120.08951 * 180.02562 * 12 11 5 14 14 H 1.07996 * 119.99410 * 25.04547 * 13 12 11 15 15 C 1.39927 * 120.00308 * 205.03990 * 13 12 11 16 16 N 1.30857 * 120.00009 * 17.96113 * 15 13 12 17 17 Si 1.86798 * 119.99753 * 197.96333 * 15 13 12 18 18 H 1.48491 * 109.47445 * 59.99960 * 17 15 13 19 19 H 1.48504 * 109.46768 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47210 * 299.99475 * 17 15 13 21 21 C 1.38235 * 119.73055 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47522 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47465 * 300.00490 * 1 2 3 24 24 H 1.09006 * 109.46911 * 60.00118 * 1 2 3 25 25 H 1.08000 * 119.60169 * 359.96387 * 4 3 2 26 26 H 1.07998 * 123.90434 * 179.97438 * 9 6 5 27 27 H 0.96995 * 120.00351 * 180.02562 * 16 15 13 28 28 H 1.07996 * 120.06749 * 0.25047 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4295 1.2772 -0.0005 5 6 4.0920 2.5200 0.0000 6 6 5.5266 2.8135 0.0001 7 6 6.5318 1.7936 0.0003 8 7 7.3293 0.9845 0.0017 9 6 5.8139 4.1208 0.0001 10 16 4.4142 5.0860 0.0007 11 6 3.3424 3.6926 -0.0004 12 6 1.9221 3.6192 -0.0006 13 6 1.1535 4.8004 -0.0015 14 1 1.5694 5.7148 -0.3980 15 6 -0.1484 4.7884 0.5111 16 7 -0.5336 3.8150 1.2962 17 14 -1.3367 6.1620 0.0746 18 1 -1.5309 6.1995 -1.3971 19 1 -2.6418 5.9174 0.7396 20 1 -0.7823 7.4608 0.5340 21 6 1.2878 2.3671 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 4.0071 0.3646 -0.0004 26 1 6.8187 4.5168 0.0006 27 1 -1.4361 3.8064 1.6513 28 1 0.2096 2.3067 0.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396190909.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:35 Heat of formation + Delta-G solvation = 19.698986 kcal Electronic energy + Delta-G solvation = -16074.666002 eV Core-core repulsion = 13374.982225 eV Total energy + Delta-G solvation = -2699.683777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.04198 -37.51486 -36.00127 -34.66754 -32.83251 -29.99716 -28.05566 -26.83947 -25.64035 -23.67333 -21.56158 -20.54846 -18.30157 -16.65275 -16.55535 -16.08211 -15.14277 -14.95807 -14.84011 -14.47484 -13.61117 -13.35039 -13.04668 -12.83794 -12.49721 -12.22278 -11.90007 -11.72222 -11.46321 -11.37858 -11.14717 -10.97584 -10.73153 -10.61507 -10.18154 -9.77443 -9.60333 -9.22554 -8.35276 -7.36261 -7.13132 -6.75280 -4.69520 1.29398 2.29291 2.51565 2.64443 2.83655 2.90948 2.92944 3.04506 3.20610 3.69568 3.91963 4.16133 4.37752 4.68807 5.23646 5.28048 5.75301 5.85655 6.02685 6.09400 6.26201 6.31287 6.58154 6.69897 6.81507 6.91976 7.28583 7.35723 7.55207 7.82568 7.97290 8.04892 8.35205 8.47841 8.63004 9.83405 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.008459 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.514440 B = 3309.224841 C = 4701.849354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.332 6.332 3 C 0.162 3.838 4 C -0.250 4.250 5 C 0.016 3.984 6 C -0.057 4.057 7 C 0.291 3.709 8 N -0.452 5.452 9 C -0.188 4.188 10 S 0.173 5.827 11 C -0.251 4.251 12 C 0.178 3.822 13 C -0.449 4.449 14 H 0.086 0.914 15 C 0.079 3.921 16 N -0.774 5.774 17 Si 0.912 3.088 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.257 4.257 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.101 0.899 26 H 0.162 0.838 27 H 0.287 0.713 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 2.911 -1.534 3.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.246 6.246 3 C 0.117 3.883 4 C -0.273 4.273 5 C 0.009 3.991 6 C -0.079 4.079 7 C -0.025 4.025 8 N -0.129 5.129 9 C -0.329 4.329 10 S 0.442 5.558 11 C -0.366 4.366 12 C 0.172 3.828 13 C -0.477 4.477 14 H 0.104 0.896 15 C -0.142 4.142 16 N -0.397 5.397 17 Si 0.735 3.265 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.280 4.280 22 H 0.101 0.899 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.119 0.881 26 H 0.180 0.820 27 H 0.098 0.902 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.253 3.012 -1.370 3.319 hybrid contribution -0.821 -0.614 -0.035 1.026 sum -0.568 2.398 -1.405 2.837 Atomic orbital electron populations 1.22837 0.79565 1.01808 1.01746 1.85919 1.20559 1.28701 1.89460 1.18530 0.91373 0.83591 0.94779 1.19037 0.90781 0.94685 1.22798 1.17979 0.88059 0.93229 0.99872 1.15737 0.89208 0.88845 1.14079 1.25301 0.92149 0.92541 0.92463 1.81132 1.11043 1.09556 1.11203 1.24761 1.05456 0.97148 1.05491 1.82463 0.91666 1.08100 1.73535 1.22552 0.97786 0.93620 1.22655 1.16646 0.86706 0.93339 0.86103 1.19529 0.97380 0.96342 1.34447 0.89639 1.25958 0.98788 0.97195 0.92228 1.69821 1.19470 1.30409 1.20049 0.86284 0.78798 0.81149 0.80273 1.18421 1.20031 1.18524 1.21204 0.99941 0.90177 1.16724 0.89945 0.92352 0.93381 0.88102 0.82046 0.90215 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.60 15 2 O -0.33 -7.04 10.49 -19.57 -0.21 -7.24 15 3 C 0.16 3.76 6.66 -39.49 -0.26 3.50 15 4 C -0.25 -5.74 9.81 -38.51 -0.38 -6.12 15 5 C 0.02 0.34 6.03 -105.27 -0.63 -0.29 15 6 C -0.06 -1.08 5.82 -106.22 -0.62 -1.70 15 7 C 0.29 5.56 15.42 -22.47 -0.35 5.21 15 8 N -0.45 -8.98 18.54 41.84 0.78 -8.21 15 9 C -0.19 -3.05 10.55 29.19 0.31 -2.74 15 10 S 0.17 3.05 22.57 -107.50 -2.43 0.62 15 11 C -0.25 -5.58 6.35 -37.71 -0.24 -5.82 15 12 C 0.18 4.28 5.59 -106.55 -0.60 3.68 15 13 C -0.45 -10.46 8.82 -37.93 -0.33 -10.80 15 14 H 0.09 1.89 7.75 -52.49 -0.41 1.48 15 15 C 0.08 1.75 5.12 -17.33 -0.09 1.66 15 16 N -0.77 -17.62 10.98 55.55 0.61 -17.01 15 17 Si 0.91 16.49 29.60 -169.99 -5.03 11.46 15 18 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 19 H -0.28 -4.88 7.11 56.52 0.40 -4.47 15 20 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 21 C -0.26 -6.13 7.65 -38.79 -0.30 -6.42 15 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.06 1.02 7.64 -51.93 -0.40 0.63 15 24 H 0.05 0.79 7.65 -51.93 -0.40 0.39 15 25 H 0.10 2.26 8.06 -52.49 -0.42 1.83 15 26 H 0.16 2.03 8.06 -52.49 -0.42 1.61 15 27 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 28 H 0.14 3.20 4.35 -52.49 -0.23 2.98 15 LS Contribution 271.05 15.07 4.08 4.08 Total: -1.00 -25.89 271.05 -6.52 -32.41 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -1.83 Total: 2.11 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.50 Total: -18.23 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 1.39 Total: -25.22 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.21 Total: -7.24 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.43 Total: 0.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.89 -6.52 -32.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190909.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.110 kcal (2) G-P(sol) polarization free energy of solvation -25.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds