Wall clock time and date at job start Mon Mar 30 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35945 * 116.99984 * 2 1 4 4 C 1.38486 * 119.72899 * 180.02562 * 3 2 1 5 5 C 1.40837 * 120.79176 * 180.02562 * 4 3 2 6 6 C 1.46433 * 129.62504 * 179.97438 * 5 4 3 7 7 C 1.43199 * 123.02140 * 359.96527 * 6 5 4 8 8 N 5.98184 * 170.52689 * 0.09737 * 2 1 3 9 9 C 1.33846 * 113.95582 * 179.97438 * 6 5 4 10 10 S 1.70028 * 112.19632 * 0.02562 * 9 6 5 11 11 C 1.39176 * 119.34785 * 359.93271 * 5 4 3 12 12 C 1.42217 * 119.62742 * 0.02910 * 11 5 4 13 13 C 1.40931 * 120.08951 * 180.02562 * 12 11 5 14 14 H 1.07996 * 119.99410 * 25.04547 * 13 12 11 15 15 C 1.39927 * 120.00308 * 205.03990 * 13 12 11 16 16 N 1.30857 * 120.00009 * 17.96113 * 15 13 12 17 17 Si 1.86798 * 119.99753 * 197.96333 * 15 13 12 18 18 H 1.48491 * 109.47445 * 59.99960 * 17 15 13 19 19 H 1.48504 * 109.46768 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47210 * 299.99475 * 17 15 13 21 21 C 1.38235 * 119.73055 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47522 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47465 * 300.00490 * 1 2 3 24 24 H 1.09006 * 109.46911 * 60.00118 * 1 2 3 25 25 H 1.08000 * 119.60169 * 359.96387 * 4 3 2 26 26 H 1.07998 * 123.90434 * 179.97438 * 9 6 5 27 27 H 0.96995 * 120.00351 * 180.02562 * 16 15 13 28 28 H 1.07996 * 120.06749 * 0.25047 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4295 1.2772 -0.0005 5 6 4.0920 2.5200 0.0000 6 6 5.5266 2.8135 0.0001 7 6 6.5318 1.7936 0.0003 8 7 7.3293 0.9845 0.0017 9 6 5.8139 4.1208 0.0001 10 16 4.4142 5.0860 0.0007 11 6 3.3424 3.6926 -0.0004 12 6 1.9221 3.6192 -0.0006 13 6 1.1535 4.8004 -0.0015 14 1 1.5694 5.7148 -0.3980 15 6 -0.1484 4.7884 0.5111 16 7 -0.5336 3.8150 1.2962 17 14 -1.3367 6.1620 0.0746 18 1 -1.5309 6.1995 -1.3971 19 1 -2.6418 5.9174 0.7396 20 1 -0.7823 7.4608 0.5340 21 6 1.2878 2.3671 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 4.0071 0.3646 -0.0004 26 1 6.8187 4.5168 0.0006 27 1 -1.4361 3.8064 1.6513 28 1 0.2096 2.3067 0.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396190909.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:35 Heat of formation + Delta-G solvation = 6.668697 kcal Electronic energy + Delta-G solvation = -16075.231038 eV Core-core repulsion = 13374.982225 eV Total energy + Delta-G solvation = -2700.248813 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68055 -39.07570 -37.57943 -36.27993 -34.44076 -31.69192 -29.66761 -28.38197 -27.27162 -25.17189 -23.24083 -22.18957 -19.93858 -18.24489 -18.14187 -17.61293 -16.69581 -16.56601 -16.40944 -16.12557 -15.13092 -14.84258 -14.58135 -14.36515 -14.06383 -13.82198 -13.42122 -13.29841 -13.02077 -12.87134 -12.59782 -12.49295 -12.35034 -12.08973 -11.75929 -11.36433 -11.23487 -10.84392 -9.96922 -9.01906 -8.78032 -8.35493 -6.44160 -0.16160 0.81525 0.85921 1.01615 1.28567 1.43529 1.53392 1.57189 1.69038 2.18729 2.37274 2.62277 2.72783 3.21731 3.51701 3.91802 4.41736 4.46143 4.53360 4.63712 4.73572 4.75423 4.92166 5.04255 5.14465 5.25352 5.57319 5.69536 5.81840 6.08946 6.32774 6.49223 6.63422 6.76054 6.92727 8.20331 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.008459 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.514440 B = 3309.224841 C = 4701.849354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.345 6.345 3 C 0.155 3.845 4 C -0.277 4.277 5 C 0.010 3.990 6 C -0.085 4.085 7 C 0.304 3.696 8 N -0.472 5.472 9 C -0.152 4.152 10 S 0.231 5.769 11 C -0.288 4.288 12 C 0.154 3.846 13 C -0.470 4.470 14 H 0.093 0.907 15 C 0.044 3.956 16 N -0.801 5.801 17 Si 0.980 3.020 18 H -0.259 1.259 19 H -0.269 1.269 20 H -0.254 1.254 21 C -0.282 4.282 22 H 0.122 0.878 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.209 0.791 27 H 0.295 0.705 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 4.801 -1.727 5.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.259 6.259 3 C 0.110 3.890 4 C -0.300 4.300 5 C 0.003 3.997 6 C -0.106 4.106 7 C -0.011 4.011 8 N -0.149 5.149 9 C -0.293 4.293 10 S 0.500 5.500 11 C -0.403 4.403 12 C 0.149 3.851 13 C -0.498 4.498 14 H 0.111 0.889 15 C -0.175 4.175 16 N -0.424 5.424 17 Si 0.800 3.200 18 H -0.183 1.183 19 H -0.193 1.193 20 H -0.178 1.178 21 C -0.306 4.306 22 H 0.140 0.860 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.226 0.774 27 H 0.106 0.894 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.587 4.882 -1.559 5.158 hybrid contribution -0.915 -1.158 0.047 1.477 sum -0.328 3.724 -1.512 4.033 Atomic orbital electron populations 1.23062 0.77520 1.04241 1.01246 1.85893 1.22680 1.28060 1.89283 1.18695 0.91740 0.84075 0.94521 1.19204 0.90955 0.95278 1.24591 1.18283 0.89760 0.92866 0.98810 1.15598 0.87712 0.89925 1.17369 1.25230 0.91803 0.92260 0.91779 1.81141 1.11792 1.09703 1.12310 1.25291 1.07325 0.95825 1.00853 1.82227 0.90200 1.05459 1.72131 1.22906 0.98021 0.96259 1.23085 1.17012 0.88067 0.93731 0.86301 1.19815 0.98470 0.96409 1.35100 0.88936 1.26774 0.99822 0.99396 0.91536 1.69868 1.20257 1.31875 1.20410 0.85260 0.76684 0.78231 0.79842 1.18305 1.19316 1.17810 1.21217 0.99815 0.90750 1.18784 0.85976 0.93410 0.93303 0.88593 0.77395 0.89435 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 9.80 113.37 1.11 2.28 15 2 O -0.34 -15.04 10.49 -92.93 -0.97 -16.02 15 3 C 0.16 7.48 6.66 22.33 0.15 7.63 15 4 C -0.28 -13.19 9.81 22.97 0.23 -12.97 15 5 C 0.01 0.46 6.03 -20.28 -0.12 0.34 15 6 C -0.08 -3.09 5.82 -20.90 -0.12 -3.22 15 7 C 0.30 11.29 15.42 88.33 1.36 12.65 15 8 N -0.47 -18.34 18.54 19.00 0.35 -17.99 15 9 C -0.15 -4.41 10.55 66.82 0.71 -3.71 15 10 S 0.23 7.51 22.57 -56.49 -1.28 6.24 15 11 C -0.29 -12.75 6.35 23.48 0.15 -12.60 15 12 C 0.15 7.56 5.59 -21.12 -0.12 7.45 15 13 C -0.47 -21.94 8.82 23.34 0.21 -21.73 15 14 H 0.09 4.02 7.75 -2.91 -0.02 4.00 15 15 C 0.04 1.91 5.12 85.25 0.44 2.35 15 16 N -0.80 -36.78 10.98 21.83 0.24 -36.54 15 17 Si 0.98 32.92 29.60 68.60 2.03 34.95 15 18 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 19 H -0.27 -8.65 7.11 99.48 0.71 -7.94 15 20 H -0.25 -8.22 7.11 99.48 0.71 -7.52 15 21 C -0.28 -13.96 7.65 22.79 0.17 -13.78 15 22 H 0.12 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.05 1.73 7.64 -2.39 -0.02 1.71 15 24 H 0.05 1.65 7.65 -2.38 -0.02 1.63 15 25 H 0.10 4.49 8.06 -2.91 -0.02 4.46 15 26 H 0.21 4.07 8.06 -2.91 -0.02 4.05 15 27 H 0.29 12.14 8.30 -92.71 -0.77 11.37 15 28 H 0.13 6.41 4.35 -2.91 -0.01 6.40 15 Total: -1.00 -57.03 271.05 5.74 -51.29 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.21 Total: 13.38 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.16 Total: -35.31 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.59 Total: -54.53 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.97 Total: -16.02 kcal Atomic # 14 Polarization: 32.92 SS G_CDS: 2.03 Total: 34.95 kcal Atomic # 16 Polarization: 7.51 SS G_CDS: -1.28 Total: 6.24 kcal Total: -57.03 5.74 -51.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190909.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.955 kcal (2) G-P(sol) polarization free energy of solvation -57.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds