Wall clock time and date at job start Mon Mar 30 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35774 * 117.00677 * 2 1 4 4 C 1.37848 * 119.77264 * 2.35461 * 3 2 1 5 5 C 1.40486 * 120.04346 * 180.02562 * 4 3 2 6 6 C 1.40568 * 119.88212 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00203 * 151.03337 * 6 5 4 8 8 C 1.40185 * 119.99971 * 331.02849 * 6 5 4 9 9 N 1.30695 * 120.00207 * 160.15357 * 8 6 5 10 10 Si 1.86800 * 119.99770 * 340.16046 * 8 6 5 11 11 H 1.48504 * 109.47377 * 95.29808 * 10 8 6 12 12 H 1.48506 * 109.47183 * 215.29583 * 10 8 6 13 13 H 1.48503 * 109.47240 * 335.29596 * 10 8 6 14 14 C 1.42400 * 120.23715 * 359.97438 * 5 4 3 15 15 S 1.75947 * 130.37398 * 180.02562 * 14 5 4 16 16 C 1.75314 * 92.13267 * 179.81470 * 15 14 5 17 17 C 1.32119 * 111.20348 * 0.34372 * 16 15 14 18 18 C 1.39106 * 119.86408 * 0.02562 * 14 5 4 19 19 C 1.40026 * 119.78120 * 182.35064 * 3 2 1 20 20 C 1.43200 * 119.75856 * 0.02562 * 19 3 2 21 21 N 3.51021 * 165.18913 * 189.02332 * 2 1 3 22 22 H 1.08997 * 109.46906 * 64.52039 * 1 2 3 23 23 H 1.08997 * 109.47646 * 184.51878 * 1 2 3 24 24 H 1.08996 * 109.47125 * 304.52410 * 1 2 3 25 25 H 1.08002 * 119.97982 * 0.02562 * 4 3 2 26 26 H 0.96998 * 119.99997 * 179.97438 * 9 8 6 27 27 H 1.07998 * 124.39673 * 180.19945 * 16 15 14 28 28 H 1.08008 * 122.55078 * 179.86311 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2912 2.3624 0.0492 5 6 1.9232 3.6171 0.0489 6 6 1.1507 4.7904 0.0986 7 1 1.5534 5.6833 0.5534 8 6 -0.1425 4.8016 -0.4424 9 7 -0.9970 5.7194 -0.0743 10 14 -0.6445 3.5044 -1.6894 11 1 -1.3351 2.3893 -0.9931 12 1 -1.5622 4.1076 -2.6891 13 1 0.5647 2.9851 -2.3775 14 6 3.3436 3.7045 -0.0015 15 16 4.3992 5.1122 -0.0139 16 6 5.8387 4.1137 -0.0796 17 6 5.5290 2.8294 -0.0980 18 6 4.1078 2.5432 -0.0512 19 6 3.4432 1.2779 -0.0498 20 6 4.2124 0.0711 -0.1010 21 7 4.8226 -0.8862 -0.1407 22 1 -0.3633 0.4421 -0.9277 23 1 -0.3634 -1.0244 0.0810 24 1 -0.3633 0.5824 0.8466 25 1 0.2136 2.3010 0.0879 26 1 -1.8917 5.7273 -0.4489 27 1 6.8475 4.4985 -0.1044 28 1 6.2774 2.0518 -0.1399 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396190951.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:53 Heat of formation + Delta-G solvation = 7.898169 kcal Electronic energy + Delta-G solvation = -16369.789803 eV Core-core repulsion = 13669.594305 eV Total energy + Delta-G solvation = -2700.195499 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03946 -38.93928 -37.25464 -36.50314 -34.78517 -32.45711 -29.81935 -28.59127 -27.72750 -24.30354 -23.35310 -21.61342 -20.30999 -19.40561 -18.28867 -17.67513 -16.98693 -16.66371 -16.38905 -15.92050 -15.12287 -15.05543 -14.72066 -14.29225 -14.08959 -13.86120 -13.68822 -13.42759 -13.04529 -13.00804 -12.80057 -12.64601 -12.42850 -12.01703 -11.77552 -11.50883 -11.38535 -10.87867 -10.03184 -9.21762 -9.17989 -8.52397 -6.75233 -0.18835 0.45959 0.91714 1.17979 1.34505 1.37678 1.41562 1.53311 1.93719 1.97904 2.07618 2.34550 2.69708 3.26797 3.43734 3.93181 4.26722 4.31179 4.35324 4.38960 4.62902 4.67177 4.74614 4.85792 4.98456 5.13234 5.28647 5.48954 5.58336 5.78127 5.95915 6.16811 6.46353 6.53257 6.86661 7.83351 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.011645 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.599047 B = 2403.821740 C = 3932.540707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.233 3.767 4 C -0.351 4.351 5 C 0.154 3.846 6 C -0.422 4.422 7 H 0.083 0.917 8 C 0.061 3.939 9 N -0.789 5.789 10 Si 0.947 3.053 11 H -0.236 1.236 12 H -0.270 1.270 13 H -0.255 1.255 14 C -0.249 4.249 15 S 0.092 5.908 16 C -0.169 4.169 17 C -0.154 4.154 18 C 0.027 3.973 19 C -0.208 4.208 20 C 0.307 3.693 21 N -0.513 5.513 22 H 0.054 0.946 23 H 0.129 0.871 24 H 0.062 0.938 25 H 0.130 0.870 26 H 0.309 0.691 27 H 0.202 0.798 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -0.713 -1.601 1.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.184 3.816 4 C -0.374 4.374 5 C 0.148 3.852 6 C -0.448 4.448 7 H 0.101 0.899 8 C -0.163 4.163 9 N -0.410 5.410 10 Si 0.769 3.231 11 H -0.161 1.161 12 H -0.196 1.196 13 H -0.179 1.179 14 C -0.364 4.364 15 S 0.356 5.644 16 C -0.304 4.304 17 C -0.186 4.186 18 C 0.015 3.985 19 C -0.218 4.218 20 C -0.002 4.002 21 N -0.193 5.193 22 H 0.073 0.927 23 H 0.147 0.853 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.120 0.880 27 H 0.219 0.781 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.303 -0.579 -1.592 2.137 hybrid contribution -0.740 -1.130 -0.276 1.378 sum 0.563 -1.709 -1.868 2.593 Atomic orbital electron populations 1.23440 0.76736 1.05617 1.02029 1.85964 1.23295 1.27358 1.87966 1.18339 0.89925 0.84035 0.89309 1.20672 0.98988 0.90850 1.26917 1.16970 0.89052 0.92756 0.86455 1.19724 0.97434 0.97787 1.29852 0.89875 1.26941 0.94567 0.97642 0.97177 1.69600 1.06508 1.31040 1.33847 0.85765 0.79853 0.78853 0.78647 1.16085 1.19562 1.17879 1.22698 0.97246 0.95982 1.20519 1.83691 0.95001 1.07850 1.77905 1.25532 1.03472 0.96100 1.05279 1.20901 0.93202 0.97456 1.07005 1.18761 0.92675 0.90384 0.96694 1.14434 0.87739 0.85902 1.33688 1.25515 0.91854 0.92061 0.90798 1.81032 1.10796 1.11337 1.16181 0.92709 0.85261 0.91911 0.85238 0.87982 0.78143 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.84 113.37 1.12 1.57 15 2 O -0.33 -12.75 9.87 -91.01 -0.90 -13.65 15 3 C 0.23 9.89 6.66 22.61 0.15 10.04 15 4 C -0.35 -15.09 6.17 22.73 0.14 -14.95 15 5 C 0.15 7.03 5.14 -21.13 -0.11 6.92 15 6 C -0.42 -19.96 9.29 23.31 0.22 -19.75 15 7 H 0.08 4.17 7.96 -2.91 -0.02 4.15 15 8 C 0.06 2.70 5.37 85.33 0.46 3.16 15 9 N -0.79 -35.52 13.92 21.87 0.30 -35.22 15 10 Si 0.95 35.42 24.10 68.60 1.65 37.07 15 11 H -0.24 -7.79 5.94 99.48 0.59 -7.20 15 12 H -0.27 -9.43 7.11 99.48 0.71 -8.72 15 13 H -0.26 -10.33 6.93 99.48 0.69 -9.64 15 14 C -0.25 -10.70 6.36 23.51 0.15 -10.55 15 15 S 0.09 3.24 22.86 -56.49 -1.29 1.95 15 16 C -0.17 -4.97 11.04 66.84 0.74 -4.23 15 17 C -0.15 -5.26 9.95 23.04 0.23 -5.03 15 18 C 0.03 1.10 5.99 -20.15 -0.12 0.98 15 19 C -0.21 -8.96 5.84 -20.43 -0.12 -9.08 15 20 C 0.31 13.19 14.45 88.33 1.28 14.46 15 21 N -0.51 -22.46 18.54 19.00 0.35 -22.11 15 22 H 0.05 1.54 6.77 -2.39 -0.02 1.53 15 23 H 0.13 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.06 1.75 7.25 -2.39 -0.02 1.74 15 25 H 0.13 5.20 2.83 -2.91 -0.01 5.19 15 26 H 0.31 12.18 8.29 -92.71 -0.77 11.41 15 27 H 0.20 4.06 8.06 -2.91 -0.02 4.03 15 28 H 0.14 4.48 8.03 -2.91 -0.02 4.46 15 Total: -1.00 -54.10 262.70 5.33 -48.76 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.09 Total: 9.65 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.13 Total: -26.46 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.66 Total: -57.33 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.90 Total: -13.65 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 1.65 Total: 37.07 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.29 Total: 1.95 kcal Total: -54.10 5.33 -48.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396190951.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.662 kcal (2) G-P(sol) polarization free energy of solvation -54.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds