Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35930 * 116.99999 * 2 1 4 4 C 1.37706 * 119.75849 * 359.97438 * 3 2 1 5 5 C 1.40045 * 119.97797 * 179.97438 * 4 3 2 6 6 C 1.43200 * 120.02041 * 180.02562 * 5 4 3 7 7 N 5.83375 * 80.99704 * 0.02562 * 2 1 3 8 8 C 1.38990 * 119.96427 * 0.02562 * 5 4 3 9 9 C 1.40257 * 120.30762 * 0.02562 * 8 5 4 10 10 C 1.46721 * 129.35171 * 179.97438 * 9 8 5 11 11 C 1.40754 * 123.29854 * 0.02562 * 10 9 8 12 12 H 1.08003 * 120.00616 * 22.21290 * 11 10 9 13 13 C 1.39739 * 119.99874 * 202.21584 * 11 10 9 14 14 N 1.31058 * 120.00058 * 10.93058 * 13 11 10 15 15 Si 1.86804 * 119.99990 * 190.92530 * 13 11 10 16 16 H 1.48499 * 109.46867 * 60.00585 * 15 13 11 17 17 H 1.48505 * 109.46853 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47323 * 299.99997 * 15 13 11 19 19 C 1.36421 * 113.39603 * 179.18336 * 10 9 8 20 20 S 1.69954 * 111.99379 * 0.75718 * 19 10 9 21 21 C 1.39469 * 119.44530 * 359.70728 * 9 8 5 22 22 H 1.09001 * 109.46668 * 300.00338 * 1 2 3 23 23 H 1.09000 * 109.47214 * 59.99723 * 1 2 3 24 24 H 1.08994 * 109.47373 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.01074 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.84094 * 179.97438 * 8 5 4 27 27 H 0.96997 * 120.00147 * 179.97438 * 14 13 11 28 28 H 1.08007 * 123.99792 * 180.13778 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3629 -0.0005 5 6 1.9223 3.6131 0.0000 6 6 1.1382 4.8114 0.0000 7 7 0.5161 5.7619 0.0026 8 6 3.3100 3.6903 0.0005 9 6 4.0840 2.5206 0.0000 10 6 5.5435 2.3708 -0.0001 11 6 6.4323 3.4622 0.0009 12 1 6.1020 4.4275 0.3553 13 6 7.7423 3.2969 -0.4568 14 7 8.0840 2.1970 -1.0822 15 14 9.0063 4.6436 -0.1773 16 1 9.1628 4.8807 1.2803 17 1 10.3099 4.2261 -0.7532 18 1 8.5512 5.8942 -0.8362 19 6 5.9546 1.0701 0.0172 20 16 4.6438 -0.0117 0.0131 21 6 3.4494 1.2786 0.0051 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2130 2.3020 -0.0005 26 1 3.7946 4.6555 0.0005 27 1 8.9931 2.0824 -1.4003 28 1 6.9904 0.7641 0.0220 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396191410.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = 9.114927 kcal Electronic energy + Delta-G solvation = -15880.090332 eV Core-core repulsion = 13179.947596 eV Total energy + Delta-G solvation = -2700.142736 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12530 -39.02583 -37.80057 -36.24583 -34.08625 -31.58953 -30.02825 -28.38044 -27.71194 -24.96700 -23.40944 -21.90259 -19.90174 -18.62847 -18.11598 -17.59476 -16.97415 -16.63919 -16.60310 -15.72641 -15.10899 -14.97105 -14.62398 -14.50326 -14.02807 -13.79208 -13.50404 -13.21955 -13.14656 -12.77999 -12.51045 -12.43927 -12.27156 -12.03960 -11.86463 -11.51890 -11.21278 -11.00262 -9.77696 -9.27396 -8.57149 -8.35756 -6.25516 -0.28298 0.18111 1.07911 1.32770 1.42293 1.52407 1.59308 1.70309 1.93830 2.11731 2.25215 2.38243 2.83179 2.86337 3.37504 3.87267 4.12489 4.18900 4.44961 4.51909 4.53789 4.75215 4.84193 4.98196 5.17154 5.23388 5.30886 5.50939 5.79055 5.99755 6.39201 6.44339 6.51820 6.84369 6.95715 8.42494 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.007337 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.463199 B = 3815.559224 C = 5127.596526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.156 3.844 4 C -0.158 4.158 5 C -0.014 4.014 6 C 0.292 3.708 7 N -0.458 5.458 8 C -0.052 4.052 9 C -0.063 4.063 10 C 0.058 3.942 11 C -0.465 4.465 12 H 0.082 0.918 13 C 0.028 3.972 14 N -0.831 5.831 15 Si 0.982 3.018 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.260 1.260 19 C -0.381 4.381 20 S 0.107 5.893 21 C -0.164 4.164 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.171 0.829 26 H 0.133 0.867 27 H 0.284 0.716 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 -2.903 1.576 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.105 3.895 4 C -0.182 4.182 5 C -0.022 4.022 6 C -0.022 4.022 7 N -0.134 5.134 8 C -0.075 4.075 9 C -0.075 4.075 10 C 0.050 3.950 11 C -0.497 4.497 12 H 0.100 0.900 13 C -0.185 4.185 14 N -0.458 5.458 15 Si 0.804 3.196 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.184 1.184 19 C -0.517 4.517 20 S 0.373 5.627 21 C -0.282 4.282 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.140 0.860 25 H 0.188 0.812 26 H 0.151 0.849 27 H 0.094 0.906 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.363 -3.371 1.461 10.994 hybrid contribution 1.319 1.692 -0.097 2.148 sum -9.044 -1.678 1.364 9.299 Atomic orbital electron populations 1.23453 0.75929 1.05929 1.02713 1.86104 1.23845 1.25674 1.88528 1.17873 0.88280 0.85400 0.97951 1.20908 1.00820 0.88782 1.07706 1.15242 0.90161 0.87283 1.09547 1.25444 0.92279 0.92247 0.92223 1.81206 1.10248 1.10921 1.11031 1.20815 0.91241 0.97737 0.97727 1.19380 0.93820 0.91926 1.02354 1.17637 0.88598 0.93821 0.94984 1.19258 0.95741 0.96658 1.38085 0.89999 1.26632 1.00825 0.98889 0.92162 1.69912 1.20440 1.27550 1.27928 0.85235 0.76595 0.78218 0.79599 1.18598 1.19773 1.18423 1.24488 1.01475 0.96376 1.29396 1.81726 0.93869 1.08513 1.78560 1.22470 0.95311 0.98748 1.11627 0.91137 0.91254 0.86026 0.81192 0.84868 0.90600 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.80 113.37 1.11 1.34 15 2 O -0.33 -9.34 10.46 -92.76 -0.97 -10.31 15 3 C 0.16 5.11 6.71 22.69 0.15 5.26 15 4 C -0.16 -4.37 8.72 22.58 0.20 -4.18 15 5 C -0.01 -0.45 5.72 -21.41 -0.12 -0.57 15 6 C 0.29 8.86 15.32 88.33 1.35 10.21 15 7 N -0.46 -14.96 18.54 19.00 0.35 -14.60 15 8 C -0.05 -1.96 9.55 22.94 0.22 -1.74 15 9 C -0.06 -2.80 6.02 -20.27 -0.12 -2.92 15 10 C 0.06 3.00 5.68 -20.87 -0.12 2.88 15 11 C -0.46 -23.90 9.06 23.25 0.21 -23.69 15 12 H 0.08 3.95 7.66 -2.91 -0.02 3.93 15 13 C 0.03 1.40 5.36 85.17 0.46 1.85 15 14 N -0.83 -43.21 10.81 21.80 0.24 -42.97 15 15 Si 0.98 37.88 29.57 68.60 2.03 39.91 15 16 H -0.26 -9.86 7.11 99.48 0.71 -9.16 15 17 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 18 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 19 C -0.38 -19.56 9.51 67.40 0.64 -18.91 15 20 S 0.11 4.60 22.92 -56.49 -1.29 3.31 15 21 C -0.16 -6.74 6.40 23.12 0.15 -6.60 15 22 H 0.07 0.96 7.64 -2.39 -0.02 0.94 15 23 H 0.07 0.96 7.64 -2.39 -0.02 0.94 15 24 H 0.12 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.17 3.33 6.23 -2.91 -0.02 3.31 15 26 H 0.13 4.79 7.85 -2.91 -0.02 4.77 15 27 H 0.28 13.52 8.30 -92.71 -0.77 12.75 15 28 H 0.14 7.82 6.28 -2.91 -0.02 7.81 15 Total: -1.00 -59.15 271.23 5.69 -53.46 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.21 Total: 8.27 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.13 Total: -37.06 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.59 Total: -57.58 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.97 Total: -10.31 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.29 Total: 3.31 kcal Total: -59.15 5.69 -53.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396191410.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.576 kcal (2) G-P(sol) polarization free energy of solvation -59.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds