Wall clock time and date at job start Mon Mar 30 2020 06:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35709 * 117.00096 * 2 1 4 4 C 1.38047 * 118.84384 * 359.73110 * 3 2 1 5 5 C 1.39369 * 120.81556 * 179.68686 * 4 3 2 6 6 C 1.43201 * 120.41978 * 180.29586 * 5 4 3 7 7 N 5.82040 * 79.84973 * 0.02562 * 2 1 3 8 8 C 1.46297 * 119.16328 * 0.60806 * 5 4 3 9 9 C 1.39761 * 120.64148 * 179.70834 * 8 5 4 10 10 H 1.07998 * 120.00409 * 39.70086 * 9 8 5 11 11 C 1.40300 * 119.99818 * 219.70429 * 9 8 5 12 12 N 1.30680 * 120.00112 * 19.86072 * 11 9 8 13 13 Si 1.86796 * 120.00228 * 199.86664 * 11 9 8 14 14 H 1.48500 * 109.47139 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47444 * 119.99612 * 13 11 9 16 16 H 1.48498 * 109.47565 * 239.99909 * 13 11 9 17 17 C 1.48006 * 118.71212 * 359.68415 * 8 5 4 18 18 C 1.40047 * 128.86106 * 180.02562 * 17 8 5 19 19 C 1.32676 * 115.79107 * 179.97438 * 18 17 8 20 20 S 1.75479 * 110.63610 * 359.97438 * 19 18 17 21 21 C 1.39469 * 118.33579 * 0.02562 * 17 8 5 22 22 H 1.08992 * 109.47168 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47232 * 299.99730 * 1 2 3 24 24 H 1.09008 * 109.46966 * 59.99527 * 1 2 3 25 25 H 1.08001 * 119.59436 * 0.02562 * 4 3 2 26 26 H 0.97002 * 120.00382 * 183.28741 * 12 11 9 27 27 H 1.08002 * 122.10180 * 359.97438 * 18 17 8 28 28 H 1.07998 * 124.68015 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2701 2.3515 -0.0057 5 6 1.8597 3.6143 0.0006 6 6 1.0475 4.7938 0.0011 7 7 0.4032 5.7293 0.0026 8 6 3.3188 3.7199 -0.0001 9 6 3.9426 4.9706 0.0000 10 1 3.5400 5.7748 0.5979 11 6 5.0917 5.1814 -0.7768 12 7 5.3618 4.3818 -1.7745 13 14 6.2359 6.6050 -0.3848 14 1 5.7097 7.3557 0.7834 15 1 7.5885 6.0803 -0.0681 16 1 6.3188 7.5111 -1.5583 17 6 4.1216 2.4764 -0.0004 18 6 5.5144 2.3297 -0.0007 19 6 5.9634 1.0813 -0.0004 20 16 4.6273 -0.0564 0.0009 21 6 3.4494 1.2545 -0.0006 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.1935 2.2657 -0.0096 26 1 6.1804 4.4984 -2.2817 27 1 6.1810 3.1795 -0.0010 28 1 7.0070 0.8035 -0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396191454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:35 Heat of formation + Delta-G solvation = 30.236726 kcal Electronic energy + Delta-G solvation = -16326.962504 eV Core-core repulsion = 13627.735678 eV Total energy + Delta-G solvation = -2699.226826 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.02970 -37.26480 -35.56261 -34.03382 -33.30153 -29.86857 -28.85834 -26.75922 -25.20891 -23.15411 -21.61957 -20.05720 -18.26065 -17.47122 -16.28085 -15.73579 -15.50012 -15.02497 -14.65819 -14.38299 -13.66601 -12.95427 -12.79945 -12.66011 -12.21646 -12.08294 -11.88333 -11.71936 -11.61227 -11.38670 -11.01139 -10.88234 -10.85243 -10.54375 -10.36010 -9.85712 -9.53858 -9.18639 -8.13604 -7.54831 -7.37756 -6.61716 -4.75233 1.57483 2.13331 2.47755 2.85961 2.87256 2.93720 2.94016 3.25928 3.62744 3.83659 4.06459 4.13274 4.32194 5.10877 5.25897 5.53639 5.61158 5.64953 5.81745 5.91672 6.23109 6.32582 6.57520 6.61474 6.77262 6.88102 7.00636 7.27964 7.41343 7.54382 7.90074 8.11426 8.24527 8.39378 8.75472 9.64059 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.009945 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.990383 B = 2814.945053 C = 4227.394069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.327 6.327 3 C 0.017 3.983 4 C -0.083 4.083 5 C -0.176 4.176 6 C 0.304 3.696 7 N -0.505 5.505 8 C 0.193 3.807 9 C -0.432 4.432 10 H 0.096 0.904 11 C 0.079 3.921 12 N -0.747 5.747 13 Si 0.907 3.093 14 H -0.253 1.253 15 H -0.264 1.264 16 H -0.268 1.268 17 C -0.101 4.101 18 C -0.042 4.042 19 C -0.263 4.263 20 S 0.047 5.953 21 C -0.082 4.082 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.114 0.886 26 H 0.294 0.706 27 H 0.131 0.869 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 -5.837 1.696 6.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.243 6.243 3 C -0.031 4.031 4 C -0.108 4.108 5 C -0.185 4.185 6 C -0.005 4.005 7 N -0.185 5.185 8 C 0.185 3.815 9 C -0.458 4.458 10 H 0.114 0.886 11 C -0.146 4.146 12 N -0.368 5.368 13 Si 0.729 3.271 14 H -0.177 1.177 15 H -0.188 1.188 16 H -0.193 1.193 17 C -0.110 4.110 18 C -0.071 4.071 19 C -0.396 4.396 20 S 0.310 5.690 21 C -0.199 4.199 22 H 0.104 0.896 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.149 0.851 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.888 -6.204 1.458 6.435 hybrid contribution 0.732 1.863 -0.092 2.004 sum 1.620 -4.341 1.366 4.830 Atomic orbital electron populations 1.22795 0.80350 1.02303 1.00632 1.85889 1.19576 1.27635 1.91190 1.17126 0.88409 0.83525 1.14036 1.20311 0.97594 0.90655 1.02198 1.16255 0.90397 0.86103 1.25760 1.25475 0.91552 0.92274 0.91229 1.81026 1.11488 1.10723 1.15244 1.19119 0.87550 0.90820 0.84025 1.19537 1.07654 0.97283 1.21370 0.88644 1.26060 0.97407 0.98159 0.92992 1.69775 1.22676 1.33917 1.10410 0.86240 0.79712 0.80776 0.80377 1.17659 1.18813 1.19303 1.18824 0.91886 0.91046 1.09240 1.19742 0.94401 0.96212 0.96737 1.24856 1.01224 0.96165 1.17372 1.83668 0.96257 1.09566 1.79551 1.21763 0.93731 0.96150 1.08215 0.89581 0.93564 0.93543 0.86833 0.89445 0.85099 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 9.77 101.05 0.99 1.48 15 2 O -0.33 -6.20 10.40 -18.83 -0.20 -6.40 15 3 C 0.02 0.36 6.70 -38.80 -0.26 0.10 15 4 C -0.08 -1.73 8.65 -39.23 -0.34 -2.07 15 5 C -0.18 -4.03 5.93 -104.31 -0.62 -4.65 15 6 C 0.30 7.04 14.48 -22.48 -0.33 6.71 15 7 N -0.51 -11.97 18.54 41.83 0.78 -11.19 15 8 C 0.19 4.60 5.66 -102.09 -0.58 4.02 15 9 C -0.43 -10.15 8.19 -38.24 -0.31 -10.47 15 10 H 0.10 2.25 7.75 -52.49 -0.41 1.84 15 11 C 0.08 1.72 3.86 -17.27 -0.07 1.65 15 12 N -0.75 -16.72 10.82 55.57 0.60 -16.12 15 13 Si 0.91 16.44 29.61 -169.99 -5.03 11.40 15 14 H -0.25 -4.67 7.11 56.52 0.40 -4.27 15 15 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 16 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 17 C -0.10 -2.33 5.51 -104.76 -0.58 -2.91 15 18 C -0.04 -0.87 8.26 -40.79 -0.34 -1.21 15 19 C -0.26 -4.93 11.11 28.84 0.32 -4.61 15 20 S 0.05 0.90 23.24 -107.50 -2.50 -1.59 15 21 C -0.08 -1.81 6.42 -38.27 -0.25 -2.05 15 22 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.05 0.61 7.60 -51.93 -0.39 0.21 15 24 H 0.05 0.62 7.58 -51.92 -0.39 0.23 15 25 H 0.11 2.04 6.06 -52.49 -0.32 1.72 15 26 H 0.29 5.89 8.30 -40.82 -0.34 5.55 15 27 H 0.13 2.72 6.07 -52.49 -0.32 2.40 15 28 H 0.15 2.33 8.06 -52.49 -0.42 1.91 15 LS Contribution 268.01 15.07 4.04 4.04 Total: -1.00 -25.90 268.01 -6.48 -32.37 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -1.81 Total: 1.48 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.35 Total: -13.99 kcal Atomic # 7 Polarization: -28.69 SS G_CDS: 1.38 Total: -27.31 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.20 Total: -6.40 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.03 Total: 11.40 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -25.90 -6.48 -32.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396191454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.611 kcal (2) G-P(sol) polarization free energy of solvation -25.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds